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. 2026 Sep 28;21(9):e0358570. doi: 10.1371/journal.pone.0358570

Association of IL16 rs11556218 and IL1B rs16944 polymorphisms with type 2 diabetes in the Kinh Vietnamese population

Quynh Ai Lam 1,2,☯, Hen Huu Phan 2,☯, Linh Hoang Gia Le 3, Minh Duc Do 3,*
Editor: Milad Khorasani4
PMCID: PMC13618935  PMID: 42804470

Abstract

Background

Type 2 diabetes mellitus (T2DM) is a multifactorial metabolic disease in which inflammatory mechanisms are involved in disease development and progression. Polymorphisms in cytokine-related genes may influence susceptibility to T2DM, yet evidence in Vietnamese individuals remains scarce. This study was designed to investigate whether IL16 rs11556218 and IL1B rs16944 are associated with T2DM in Kinh Vietnamese adults.

Methods

An analytical cross-sectional unmatched case-control study was conducted in 392 unrelated Kinh Vietnamese individuals, including 196 patients with T2DM and 196 non-diabetic controls, recruited at Cho Ray Hospital, Ho Chi Minh City, between February and August 2025. Peripheral blood samples were collected for genomic DNA extraction. Genotyping of IL16 rs11556218 and IL1B rs16944 was performed using TaqMan SNP Genotyping Assays. Hardy-Weinberg equilibrium was assessed in the control group. Associations between the investigated polymorphisms and T2DM were analyzed under codominant, dominant, recessive, and log-additive models, with adjustment for body mass index (BMI), waist-to-hip ratio (WHR), and family history of diabetes.

Results

Both polymorphisms satisfied the Hardy-Weinberg equilibrium in the control group. For IL16 rs11556218, significant differences in allele and genotype frequencies were observed between patients and controls, and the G allele showed a nominal association with lower odds of T2DM. After adjustment for BMI, WHR, and family history of diabetes, the TG genotype showed a nominal association with lower odds of T2DM in the codominant model (adjusted OR = 0.56, 95% CI: 0.32–0.98; nominal P = 0.026). Nominal associations were also observed in the dominant model (adjusted OR = 0.52, 95% CI: 0.30–0.89; nominal P = 0.016) and the log-additive model (adjusted OR = 0.52, 95% CI: 0.32–0.85; nominal P = 0.0081). For IL1B rs16944, genotype distribution likewise differed between the two groups. Under the recessive model, the CC genotype showed a nominal association with higher odds of T2DM after adjustment (adjusted OR = 2.13, 95% CI: 1.20–3.79; nominal P = 0.0089). None of these associations met the Bonferroni-corrected significance threshold of P < 0.00625. Compared with controls, participants with T2DM had higher BMI and WHR, higher triglyceride levels, lower HDL cholesterol, higher fasting plasma glucose and blood pressure, and more commonly reported a family history of diabetes.

Conclusions

IL16 rs11556218 and IL1B rs16944 showed nominal associations with T2DM in this sample of Kinh Vietnamese adults, although none remained statistically significant after Bonferroni correction. These exploratory findings require confirmation in larger independent studies before any firm conclusions regarding their biological or clinical relevance can be drawn.

Introduction

Type 2 diabetes mellitus (T2DM) is a multifactorial metabolic disease characterized by insulin resistance and progressive pancreatic β-cell dysfunction. It accounts for most diabetes cases worldwide. Over recent decades, its prevalence has risen markedly, and both cardiovascular and microvascular complications remain major contributors to morbidity and mortality [1]. In Vietnam, about 2.5 million adults aged 20–79 years were living with diabetes in 2024, corresponding to an age-standardised prevalence of 3.4%, and this burden is projected to increase further by 2050 [1].

Asian populations tend to develop T2DM at younger ages and at lower BMI than White European populations. This phenotype may reflect greater insulin resistance at relatively low BMI, earlier β-cell dysfunction, increased visceral adiposity, and population-specific genetic susceptibility [2–5]. Although many genetic studies have focused on East and South Asian populations, data from Southeast Asia remain limited [6–8]. The Kinh ethnic group, which constitutes the majority of the Vietnamese population, has rarely been included in genetic studies of T2DM [9–11]. Further studies in this population may help clarify genetic factors contributing to T2DM susceptibility.

In addition to lifestyle and environmental determinants, chronic low-grade inflammation is now considered an important contributor to the pathophysiology of T2DM. Pro-inflammatory cytokines have been shown to induce β-cell stress, interfere with insulin signaling, and disturb metabolic homeostasis [12–14]. Among the cytokines implicated in these processes, interleukin-1β (IL-1β) and interleukin-16 (IL-16) are of particular interest because they represent biologically plausible candidates acting through partly distinct inflammatory pathways. Accordingly, genetic variation affecting these cytokine pathways may partly explain interindividual differences in T2DM susceptibility [15–18].

IL-1β, encoded by IL1B, is a key mediator of inflammatory responses, inflammasome activation, and insulin resistance, all of which are central features of T2DM pathogenesis [19]. The promoter polymorphism rs16944 has been suggested to influence transcriptional regulation and cytokine production [20–22]. This variant has been examined in relation to T2DM and related metabolic traits in several studies and meta-analyses, particularly in Asian populations; however, the available findings remain inconsistent. Some studies have reported a significant positive association with T2DM, whereas others have not demonstrated a clear relationship, possibly because of differences in genetic background, environmental context, or study methodology [20,21,23].

IL-16 is an immunomodulatory cytokine that binds to CD4 and promotes T-cell recruitment and activation, thereby enhancing inflammatory signaling pathways involved in insulin resistance and metabolic dysfunction [24,25]. Increased circulating IL-16 concentrations have been described in obesity, and this cytokine may participate in adipogenesis, inflammatory responses, and glucose-lipid metabolism [25]. The missense variant rs11556218 may modify protein structure or biological function and has been investigated in relation to T2DM and adverse metabolic traits in several ethnic populations, including Egyptian and Han Chinese groups, although the evidence remains limited and not entirely consistent [16,18]. To date, this locus has not, to our knowledge, been studied in Vietnamese individuals.

Previous genetic studies of T2DM in the Kinh Vietnamese population have mainly concentrated on loci associated with insulin secretion or adipokine regulation, including KCNJ11, ABCC8, and ADIPOQ, and these studies have reported associations with T2DM and metabolic syndrome. By comparison, inflammation-related genetic variants have received far less attention [9–11]. Therefore, this study aimed to investigate the associations of IL1B rs16944 and IL16 rs11556218 with T2DM in Kinh Vietnamese individuals.

Materials and methods

Study design and participants

This analytical cross-sectional hospital-based unmatched case-control study was conducted at the Outpatient Department of Cho Ray Hospital, a tertiary referral hospital in Ho Chi Minh City, between February and August 2025. Using convenience sampling, a total of 392 unrelated Kinh Vietnamese individuals were recruited, including 196 participants with T2DM and 196 individuals without T2DM. Cases and controls were not individually matched based on age, sex, or other characteristics.

The diagnosis of T2DM was established in accordance with the American Diabetes Association 2025 criteria [26]. Individuals in the non-T2DM group had no previous diagnosis of diabetes and had fasting plasma glucose levels below 100 mg/dL at the time of enrollment. Participants were excluded if they had type 1 diabetes, gestational diabetes, liver dysfunction defined by alanine aminotransferase (ALT) and/or aspartate aminotransferase (AST) levels exceeding three times the upper limit of normal, a prior diagnosis of autoimmune disease, use of medications known to affect blood glucose levels, or refusal to participate. Written informed consent was obtained from all participants before enrollment.

Clinical and biochemical assessment

Clinical and demographic information was collected using a structured case record form. The study variables included age at diagnosis (for participants with T2DM), age at recruitment (for controls), sex, family history of diabetes, BMI, waist circumference, hip circumference, waist-to-hip ratio (WHR), systolic and diastolic blood pressure, fasting plasma glucose, HbA1c (T2DM group only), triglycerides, total cholesterol, high-density lipoprotein (HDL) cholesterol, low-density lipoprotein (LDL) cholesterol, and serum creatinine.

Anthropometric measurements were obtained with participants barefoot and dressed in light clothing. BMI was calculated as weight in kilograms divided by height in meters squared (kg/m²). Waist circumference was measured at the midpoint between the lower costal margin and the iliac crest, whereas hip circumference was measured at the widest level of the buttocks. WHR was derived by dividing waist circumference by hip circumference. Blood pressure was measured after 5–10 minutes of rest using a standardized aneroid sphygmomanometer. Two readings were recorded at an interval of 1–2 minutes. When the difference between the two measurements exceeded 10 mmHg, a third reading was obtained, and the mean of the latter two values was used for analysis.

Following an overnight fast of at least 8 hours, venous blood samples were collected at the Department of Biochemistry, Cho Ray Hospital. HbA1c was measured only in participants with T2DM and was not available for the control group. It was measured in EDTA-anticoagulated whole blood by high-performance liquid chromatography using an automated Tosoh HLC-723G8 analyzer. Fasting plasma glucose, triglycerides, total cholesterol, HDL cholesterol, LDL cholesterol, and serum creatinine were analyzed on an ADVIA 1800 system (Siemens) with reagents supplied by the manufacturer. Internal and external quality control procedures were performed in accordance with laboratory regulations.

Sample size estimation

Sample size was calculated using the Genetic Power Calculator [27] based on previously reported allele frequencies [28] and genotype relative risks for rs16944 [29] and rs11556218 [16]. Under a multiplicative genetic model, assuming a type I error rate of 0.05 and statistical power of 80%, the estimated minimum sample size was 139 participants per group for rs16944 and 157 participants per group for rs11556218. To ensure adequate statistical power, the final sample included 196 participants with T2DM and 196 participants without T2DM.

DNA extraction and genotyping

Peripheral venous blood (2–3 mL) was collected into EDTA tubes for genomic analysis. Genomic DNA was extracted from whole blood using the QIAamp DNA Mini Kit (QIAGEN, Hilden, Germany) according to the manufacturer’s instructions. DNA concentration and purity were assessed using a NanoDrop 2000/2000C spectrophotometer (Thermo Fisher Scientific, USA), and DNA was stored at −30°C until genotyping.

Genotyping of IL1B rs16944 and IL16 rs11556218 was performed using TaqMan SNP Genotyping Assays on a QuantStudio™ 5 Real-Time PCR System (Thermo Fisher Scientific, USA). All DNA samples collected in this study were diluted to a final concentration of approximately 5 ng/µL. For each SNP, the real-time PCR reaction was performed in a total volume of 25 µL, containing 12.5 µL of TaqMan Genotyping Master Mix (Thermo Fisher Scientific, cat. no. 4371353), 1.25 µL of the corresponding 40X TaqMan SNP Genotyping Assay (assay ID C_1839943_10 for IL1B rs16944 or C_25646461_40 for IL16 rs11556218), an appropriate volume of diluted genomic DNA template, and nuclease-free water to a final volume of 25 µL. The thermal profile included a pre-read step at 60°C for 30 seconds, an initial denaturation at 95°C for 10 minutes, followed by 40 cycles of 95°C for 15 seconds and 60°C for 1 minute, and a final post-read step at 60°C for 30 seconds. Each run included a negative control (ddH2O) to monitor contamination and a positive control previously confirmed by Sanger sequencing to ensure genotyping accuracy. Genotyping was based on allele-specific TaqMan minor groove binder (MGB) probes in a real-time PCR assay. For IL1B rs16944, the VIC-labeled probe detected the C allele and the FAM-labeled probe detected the T allele. For IL16 rs11556218, the VIC-labeled probe detected the T allele, whereas the FAM-labeled probe detected the G allele. Genotypes were assigned according to fluorescence patterns, with single-dye signals indicating homozygosity for the corresponding allele and dual-dye signals indicating heterozygosity.

Statistical analysis

Data were entered into EpiData version 3.1 and analyzed using SPSS version 26.0 and SNPStats. Continuous variables were presented as mean ± standard deviation or median with interquartile range, depending on data distribution, whereas categorical variables were reported as counts and percentages. Differences between the T2DM and control groups were assessed using Student’s t-test or the Mann-Whitney U test for continuous variables and the chi-square test or Fisher’s exact test for categorical variables, as appropriate. Hardy-Weinberg equilibrium for each polymorphism was examined in the control group by the exact test. The associations between each polymorphism and T2DM were assessed in SNPStats under codominant, dominant, recessive, and log-additive genetic models, with odds ratios (ORs) and 95% confidence intervals (CIs) reported. Adjusted analyses were performed in SNPStats, controlling for BMI, WHR, and family history of diabetes. BMI and WHR were both retained because they reflect different aspects of adiposity: BMI reflects overall adiposity, whereas WHR reflects abdominal fat distribution. Potential multicollinearity between BMI and WHR was assessed using the variance inflation factor (VIF), with values below 2 considered acceptable. All tests were two-sided. To account for multiple testing, a Bonferroni correction was applied to the eight primary adjusted association tests arising from the evaluation of two polymorphisms under four genetic models, resulting in a corrected significance threshold of P < 0.00625 (0.05/8). Associations with nominal P values <0.05 that did not meet the corrected threshold were considered exploratory.

Ethics approval

The study protocol was reviewed and approved by the Ethics Committee of Cho Ray Hospital (No. 1886/CN-HDDD). All study procedures were conducted in accordance with the Declaration of Helsinki. Written informed consent was obtained from each participant before enrollment.

Results

Study population characteristics

The study included 392 Kinh Vietnamese participants, consisting of 196 patients with T2DM and 196 controls. Sex distribution was similar between the two groups (P = 0.297). Mean age at diagnosis in the T2DM group was comparable to mean age at recruitment in the control group (51.20 ± 11.27 vs. 51.05 ± 11.47 years, P = 0.891). Among patients with T2DM, median disease duration was 10.0 years (IQR: 4.6–15.8).

A family history of diabetes was reported more frequently in the T2DM group than in controls (61.2% vs. 25.5%, P < 0.001). Participants with T2DM also had higher BMI, WHR, fasting plasma glucose, systolic blood pressure, diastolic blood pressure, triglycerides, and serum creatinine. In contrast, total cholesterol, HDL cholesterol, and LDL cholesterol were lower in the T2DM group. All of these differences were statistically significant (Table 1).

Table 1. Baseline clinical and biochemical characteristics of the studied population.

Characteristics Studied population T2DM

N = 196
Controls

N = 196
P value
Males/females 148/244 79/117 69/127 0.297
Duration of diabetes (yr) – 10.0

(4.6-15.8)
– n/a
Age at diagnosis (T2DM)/age at recruitment (Controls) 51.13 ± 11.36 51.20 ± 11.27 51.05 ± 11.47 0.891
Family history of diabetes

n (%)
170 (43.4) 120 (61.2) 50 (25.5) <0.001*
BMI (kg/m2) 23.4

(21.4-25.7)
24.0

(22.1-26.4)
23.1

(21.1-25.0)
<0.001*
WHR 0.892 ± 0.079 0.928 ± 0.068 0.857 ± 0.072 <0.001*
SBP (mmHg) 130.0

(115.0-140.0)
131.3

(120.0-150.0)
125.0

(110.0-135.0)
<0.001*
DBP (mmHg) 80.0

(70.0-84.4)
80.0

(70.0−80.0)
80.0

(70.0-85.0)
0.003*
HbA1c (%) – 7.65

(6.71-8.98)
– n/a
FPG (mg/dL) 97.0

(89.3-131.0)
131.0

(111.0-168.8)
91.0

(86.0-95.0)
<0.001*
Triglycerides (mg/dL) 153.5

(109.0-233.5)
166.5

(126.0-263.0)
138.0

(92.0-202.0)
<0.001*
Total cholesterol (mg/dL) 186.0

(156.0-223.0)
175.0

(140.0-214.0)
196.0

(173.0-226.0)
<0.001*
HDL cholesterol (mg/dL) 46.0

(38.0-55.8)
44.5

(37.0-54.0)
48.0

(40.0-57.0)
0.006*
LDL cholesterol (mg/dL) 111.3

(83.8-146.4)
95.4

(73.3-124.9)
127.1

(104.2-159.6)
<0.001*
Serum creatinine (mg/dL) 0.79

(0.66-0.99)
0.86

(0.69-1.10)
0.76

(0.65-0.91)
<0.001*

BMI = body mass index, DBP = diastolic blood pressure, FPG = fasting plasma glucose, HDL = high-density lipoprotein, LDL = low-density lipoprotein, SBP = systolic blood pressure, T2DM = type 2 diabetes mellitus, WHR = waist-hip ratio.

Data are presented as mean ± standard deviation, median (interquartile range), or n (%), as appropriate.

* Statistically significant.

Genotype distributions and Hardy-Weinberg equilibrium

In the control group, genotype distributions for both polymorphisms were consistent with the Hardy-Weinberg equilibrium. Exact-test P values were 0.63 for IL16 rs11556218 and 0.15 for IL1B rs16944 (Table 2).

Table 2. Allele and genotype frequencies of rs11556218 and rs16944.

SNP Allele/ Genotype T2DM

n (%)
Controls

n (%)
P value HWE

P value (controls)
rs11556218 T 345 (88.0) 320 (81.6) 0.013* –
G 47 (12.0) 72 (18.4)
T/T 152 (77.6) 129 (65.8) 0.031* 0.63
T/G 41 (20.9) 62 (31.6)
G/G 3 (1.5) 5 (2.6)
rs16944 T 185 (47.2) 210 (53.6) 0.074 –
C 207 (52.8) 182 (46.4)
T/T 47 (24.0) 51 (26.0) 0.044* 0.15
T/C 91 (46.4) 108 (55.1)
C/C 58 (29.6) 37 (18.9)

* Statistically significant.

MAF = 0.18 (G allele).

MAF = 0.46 (C allele).

HWE, Hardy–Weinberg equilibrium. HWE was assessed in the control group using an exact test.

Association analyses for IL16 rs11556218

For IL16 rs11556218, both allele and genotype frequencies differed significantly between cases and controls. The T allele was more common in the T2DM group, whereas the G allele was less frequent (P = 0.013). Genotype distribution also differed between groups (P = 0.031). The TT genotype was observed in 77.6% of patients with T2DM and 65.8% of controls, while the TG genotype was more frequent in controls than in cases (31.6% vs. 20.9%). The minor allele frequency of G was 0.18 (Table 2). In unadjusted analyses, nominal associations were identified under the codominant, dominant, and log-additive models. Using TT as the reference, the TG genotype showed a nominal association with lower odds of T2DM (OR = 0.56, 95% CI: 0.35–0.88), whereas the GG genotype was not significantly associated with disease risk (OR = 0.51, 95% CI: 0.12–2.17). When TG and GG were combined, carriers of the G allele had lower odds of T2DM than TT homozygotes (OR = 0.56, 95% CI: 0.36–0.87; P = 0.0097). A similar finding was obtained under the log-additive model (OR = 0.60, 95% CI: 0.40–0.89; P = 0.012). No nominal association was observed under the recessive model (P = 0.47) (Table 3).

Table 3. Association of rs11556218 with T2DM (crude and adjusted analyses).

Model Genotype T2DM (n) Controls (n) Crude OR

(95% CI)
P value Adjusted OR†

(95% CI)
P value†
Codominant T/T 152 129 1 0.035* 1 0.026*
T/G 41 62 0.56 (0.35-0.88) 0.56 (0.32-0.98)
G/G 3 5 0.51 (0.12-2.17) 0.18 (0.03-1.06)
Dominant T/T 152 129 1 0.0097* 1 0.016*
T/G-G/G 44 67 0.56 (0.36-0.87) 0.52 (0.30-0.89)
Recessive T/T-T/G 193 191 1 0.47 1 0.081
G/G 3 5 0.60 (0.14-2.50) 0.21 (0.04-1.23)
Log-additive – – – 0.60 (0.40-0.89) 0.012* 0.52 (0.32-0.85) 0.0081*

N = 392.

†Adjusted for BMI, WHR, and family history of diabetes.

*Nominal P < 0.05. Bonferroni correction was applied to the eight primary adjusted association tests, with statistical significance defined as P < 0.00625; no adjusted association met the corrected threshold.

Adjustment for BMI, WHR, and family history of diabetes yielded largely similar results. In the codominant model, the TG genotype showed a nominal association with reduced odds of T2DM relative to TT (adjusted OR = 0.56, 95% CI: 0.32–0.98), whereas the GG genotype remained non-significant (adjusted OR = 0.18, 95% CI: 0.03–1.06); the overall nominal P value for the codominant model was 0.026. Under the dominant model, the combined TG and GG genotypes showed a nominal association with lower odds of T2DM than TT (adjusted OR = 0.52, 95% CI: 0.30–0.89; nominal P = 0.016). The log-additive model also showed a nominal association after adjustment (adjusted OR = 0.52, 95% CI: 0.32–0.85; nominal P = 0.0081). No association was observed under the recessive model (P = 0.081). None of the nominal associations met the Bonferroni-corrected significance threshold of P < 0.00625 (Table 3).

Association analyses for IL1B rs16944

The pattern for IL1B rs16944 differed from that observed for IL16 rs11556218. Allele frequencies did not differ significantly between groups (P = 0.074), whereas genotype distribution showed a significant between-group difference (P = 0.044). The CC genotype was more frequent in participants with T2DM than in controls (29.6% vs. 18.9%), while the TC genotype was more common in controls (55.1% vs. 46.4%). The minor allele frequency of C was 0.46 (Table 2). In the crude analysis, evidence of association was mainly confined to the recessive model. Individuals with the CC genotype had higher odds of T2DM than those with TT or TC genotypes combined (OR = 1.82, 95% CI: 1.12–2.86; P = 0.013). In the codominant model, the OR for CC relative to TT was elevated, although its 95% CI included 1 (OR = 1.69, 95% CI: 0.96–3.03), whereas the TC genotype did not differ significantly from TT. Neither the dominant model nor the log-additive model reached statistical significance (Table 4). After adjustment for BMI, WHR, and family history of diabetes, the recessive model showed a nominal association, with an adjusted OR of 2.13 (95% CI: 1.20–3.79; nominal P = 0.0089). The overall codominant model also yielded a nominal P value of 0.022, although the genotype-specific 95% CIs for TC and CC relative to TT included 1. Neither the dominant model nor the log-additive model showed evidence of association after adjustment. Neither the recessive nor the codominant finding met the Bonferroni-corrected significance threshold (Table 4).

Table 4. Association of rs16944 with T2DM (crude and adjusted analyses).

Model Genotype T2DM (n) Controls (n) Crude OR

(95% CI)
P value Adjusted OR†

(95% CI)
P value†
Codominant T/T 47 51 1 0.043* 1 0.022*
T/C 91 108 0.92 (0.56-1.49) 0.76 (0.42-1.37)
C/C 58 37 1.69 (0.96-3.03) 1.78 (0.89-3.56)
Dominant T/T 47 51 1 0.64 1 0.99
T/C-C/C 149 145 1.11 (0.70-1.75) 1.00 (0.57-1.73)
Recessive T/T-T/C 138 159 1 0.013* 1 0.0089*
C/C 58 37 1.82 (1.12-2.86) 2.13 (1.20-3.79)
Log-additive – – – 1.30 (0.98-1.72) 0.072 1.32 (0.94-1.86) 0.11

N = 392.

†Adjusted for BMI, WHR, and family history of diabetes.

*Nominal P < 0.05. Bonferroni correction was applied to the eight primary adjusted association tests, with statistical significance defined as P < 0.00625; no adjusted association met the corrected threshold.

Assessment of collinearity for BMI and WHR showed tolerance values of 0.719 and VIF values of 1.39 for both variables, indicating no meaningful multicollinearity (Table 5).

Table 5. Assessment of multicollinearity between BMI and WHR.

Variable Tolerance VIF
BMI 0.719 1.39
WHR 0.719 1.39

Discussion

In this analytical cross-sectional hospital-based unmatched case-control study of Kinh Vietnamese adults, IL16 rs11556218 and IL1B rs16944 showed nominal associations with T2DM, although their association patterns differed. After adjustment for BMI, WHR, and family history of diabetes, nominal associations were observed for rs11556218 under the codominant, dominant, and log-additive models and for rs16944 under the recessive model. However, none of these associations met the Bonferroni-corrected significance threshold. These exploratory findings suggest that variation in inflammation-related genes may be related to T2DM susceptibility in this population, which is consistent with current evidence implicating chronic low-grade inflammation in insulin resistance and β-cell dysfunction [30,31].

For IL16 rs11556218, the G allele showed a nominal association with lower odds of T2DM in our study population. This finding differs from reports in some other ethnic groups, in which the same variant has been associated with increased diabetes risk or adverse metabolic traits related to T2DM [16,18]. Such variation across studies is not surprising in a complex disorder such as T2DM, in which the effect of a single polymorphism may depend on ethnic background, linkage disequilibrium structure, environmental influences, and the broader metabolic setting. Given the established role of IL-16 in leukocyte recruitment and immune regulation, together with growing evidence of its involvement in chronic inflammatory conditions, it is biologically plausible that rs11556218 may be related to interindividual differences in inflammatory response [24,25]. However, the present study was not designed to determine the functional consequences of this variant, and no mechanistic inference can be drawn from these data alone.

A different nominal association pattern was observed for IL1B rs16944. In the adjusted analysis, the CC genotype showed a nominal association with higher odds of T2DM under the recessive model. This pattern is consistent with the known role of IL-1β in inflammatory signaling and its reported involvement in β-cell injury, impaired insulin secretion, and insulin resistance [32]. In contrast to rs11556218, the nominal association for rs16944 was observed primarily in homozygous carriers, suggesting a possible recessive pattern that requires confirmation in independent studies. Previous studies examining this polymorphism in relation to glucose metabolism have reported inconsistent results, with some cohorts showing associations with glycemic traits or diabetes risk, and others showing no clear association [21,23,33]. The available evidence suggests that the contribution of rs16944 to T2DM risk may be modest and influenced by population-specific factors.

The clinical and metabolic profile of the T2DM group was broadly consistent with the expected characteristics of the disease. Compared with controls, participants with T2DM showed the expected clustering of cardiometabolic abnormalities, including higher BMI, WHR, triglycerides, fasting plasma glucose, and blood pressure, lower HDL cholesterol, and a higher frequency of family history of diabetes. This overall pattern was consistent with the established clinical profile of T2DM [30,31]. Total cholesterol and LDL cholesterol levels were also lower in the T2DM group. Although information on lipid-lowering medication use was not systematically collected, statins are routinely prescribed to eligible patients with T2DM in our clinical setting. Therefore, the lower total cholesterol and LDL cholesterol levels may reflect the effects of lipid-lowering therapy rather than the untreated lipid profile of the T2DM group and should be interpreted with caution. The effect estimates remained broadly similar after adjustment for BMI, WHR, and family history of diabetes, indicating that they were not materially altered by the selected covariates. VIF values indicated no meaningful multicollinearity between BMI and WHR.

Several points should be considered when interpreting the present findings. First, because this was an analytical cross-sectional observational case-control study, the results should be interpreted as associations rather than evidence of temporal or causal relationships. The observed associations may reflect direct effects of the investigated variants, linkage with other functional loci in the same genomic region, or interaction with unmeasured factors such as diet, physical activity, or other inflammatory mediators. In addition, HbA1c testing and an oral glucose tolerance test were not performed in the control group. Although controls had no previous diagnosis of diabetes and fasting plasma glucose levels <100 mg/dL at enrollment, dysglycemia detectable only by HbA1c or an oral glucose tolerance test could not be excluded. Consequently, some participants with undiagnosed prediabetes or, less likely, diabetes may have been misclassified as controls. This potential misclassification may have reduced the contrast between the two groups and biased the estimated genotype-T2DM associations toward the null. Second, the study was restricted to Kinh Vietnamese individuals. Although this reduces ethnic heterogeneity and mimimise the possibility of residual population stratification, it may also limit the generalizability of the findings to populations with different genetic backgrounds or environmental exposures. In addition, participants were recruited using convenience sampling at a tertiary referral hospital. Participants with T2DM attending this setting may have had longer disease duration, more complex glycemic management, or a greater burden of comorbidities and complications than those managed in primary care or community settings. Therefore, selection bias cannot be excluded, and the findings may not be fully generalizable to the broader community-based Kinh Vietnamese population. Information on lipid-lowering medication use, including statin type, dose, and treatment duration, was not systematically collected. Therefore, the influence of such treatment on the between-group differences in total cholesterol and LDL cholesterol could not be quantified. Third, although the sample size met the prespecified power requirements, some genotype categories were relatively uncommon, which may have reduced precision in certain models and contributed to wide confidence intervals. In addition, although several nominal associations were observed, none met the Bonferroni-corrected significance threshold. The findings should therefore be interpreted as exploratory and require confirmation in independent populations. Finally, circulating IL-1β and IL-16 concentrations were not measured, and no functional experiments were performed. The present results should therefore be viewed as statistical genetic associations rather than direct evidence of a biological mechanism. This distinction is important, since circulating cytokine levels may not fully capture inflammatory processes occurring in disease-relevant tissues. IL-1β has been implicated in the pancreatic islet microenvironment and local β-cell dysfunction [33], whereas IL-16 is more closely linked to immune cell recruitment and activation within inflamed tissues [22]. Accordingly, the absence of cytokine profiling does not exclude tissue-level effects, but it does limit biological interpretation.

Despite these limitations, this study provides preliminary population-specific evidence of nominal associations between IL16 rs11556218, IL1B rs16944, and T2DM in Kinh Vietnamese adults. The different patterns observed across the two loci raise the possibility that distinct inflammatory pathways may be related to diabetes susceptibility in different ways, although these findings require independent replication. Further research in larger cohorts, preferably with longitudinal and functional approaches, is needed to determine whether these associations are reproducible and to clarify their biological significance in this population.

Conclusion

In conclusion, IL16 rs11556218 and IL1B rs16944 showed nominal associations with T2DM in Kinh Vietnamese adults under different genetic models. However, none of these associations remained statistically significant after Bonferroni correction for multiple testing. These exploratory findings require confirmation in larger independent studies, ideally with functional investigation, before any clinical implications can be drawn.

Supporting information

S1 Data. Full data.

(XLSX)

pone.0358570.s001.xlsx (66.8KB, xlsx)

Acknowledgments

Ethical approval: This study was approved by the Ethical Committee of Cho Ray Hospital (Approval number: 1886/CN-HDDD). All participants provided written informed consent before participating in the study.

Data Availability

Yes - all data are fully available without restriction; All relevant data are within the paper and its Supporting information files.

Funding Statement

The author(s) received no specific funding for this work.

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Decision Letter 0

Milad Khorasani

15 Jul 2026

Dear Dr. Duc Do,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

Reviewer #1: Partly

Reviewer #2: Yes

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Reviewer #1: No

Reviewer #2: Yes

**********

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The PLOS Data policy

Reviewer #1: Yes

Reviewer #2: No

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Reviewer #2: Yes

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Reviewer #1: Comments to Authors

The manuscript investigates the association of IL16 rs11556218 and IL1B rs16944 polymorphisms with type 2 diabetes mellitus in a Kinh Vietnamese population. The topic is relevant and scientifically important; however, several methodological and reporting issues require major revision before the manuscript can be considered for publication.

Major Comments

Comment 1: The adjusted analyses include only BMI and WHR as covariates. Given the significant differences in family history of diabetes and other metabolic characteristics between groups, the rationale for selecting only BMI and WHR should be justified. The authors should consider additional multivariable analyses, including family history and other clinically relevant covariates, to assess the robustness of the reported associations.

Comment 2: The rationale for simultaneously adjusting for BMI and WHR should be clarified, as both variables are related measures of adiposity and may lead to over-adjustment in genetic association analyses.

Comment 3: The manuscript does not address multiple testing despite evaluating two polymorphisms under several inheritance models. The authors should perform an appropriate correction for multiple comparisons or justify why such a correction was not applied.

Comment 4: The authors should discuss the possibility of residual population stratification and clarify whether any measures were taken to minimise this bias.

Comment 5: Controls were classified as non-diabetic based on fasting plasma glucose <100 mg/dL and absence of a prior diabetes diagnosis. Since HbA1c values are not reported for controls and do not appear to have been used in the eligibility criteria, some individuals with undiagnosed diabetes or prediabetes may have been misclassified. Please clarify whether HbA1c testing was performed in controls and discuss the potential impact of misclassification bias.

Minor Comments

Comment 6: Please clarify whether the study should be described as a case-control design rather than a cross-sectional study.

Comment 7: Consider including HWE p-values directly in the genotype frequency table.

Comments to Editor

The manuscript may be considered for publication after satisfactory revision addressing the

above comments.

Reviewer #2: This paper addresses a relevant topic and provides novel population-specific data for the Kinh Vietnamese. The novel population data on Kinh Vietnamese individuals and the adequate sample size, along with power calculations, are the strengths of this article.

1. The authors adjusted only for BMI and WHR, yet Table 1 reveals numerous additional significant differences between cases and controls, including triglycerides, HDL cholesterol, blood pressure, and family history of diabetes. While BMI and WHR are appropriate adiposity measures, the rationale for excluding other potential confounders, particularly family history (a strong, well-established T2DM risk factor) and metabolic traits integral to disease pathophysiology, is not adequately justified. If these variables are considered mediators on the causal pathway between the genetic variants and T2DM, their exclusion from the model may be appropriate; however, this should be explicitly stated.

2. The authors tested two SNPs under four genetic models (8 primary tests). No correction for multiple comparisons (e.g., Bonferroni) is applied. While exploratory, this should be acknowledged as a limitation. The authors should either apply a correction and reinterpret results, or explicitly state that these are exploratory findings.

3. Controls were defined as having FPG < 100 mg/dL at enrollment. Were Oral Glucose Tolerance Test or HbA1c performed to exclude prediabetes? If not, some controls may have undiagnosed dysglycemia (impaired fasting glucose or prediabetes), which could bias results toward the null. This should be acknowledged as a limitation.

4. Abstract (lines 41) states the TG genotype was significant in the codominant model (adjusted OR = 0.54). However, Results (lines 230-231) show the crude OR for TG is 0.56, but the unadjusted P value in the abstract seems inconsistent with the full results. Please verify all abstract figures match the full text.

5. The Kinh are the majority ethnic group, but Vietnam has substantial ethnic diversity.

The authors should clarify how participants were recruited. Were they recruited consecutively, randomly, or via convenience sampling? Was the hospital a tertiary referral center? If so, cases may be more severe, potentially influencing results.

6. Line 195-196: VIF < 2 is acceptable, but why were only BMI and WHR included? This should be clarified earlier.

7. Total cholesterol and LDL are lower in cases. This is unusual in T2DM, which typically presents with dyslipidemia (high LDL, low HDL). Is this because patients are on statins? The authors don't mention medication use. This could be a major confounder and should be addressed.

**********

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Reviewer #2: No

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Attachment

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pone.0358570.s002.docx (12.5KB, docx)
PLoS One. 2026 Sep 28;21(9):e0358570. doi: 10.1371/journal.pone.0358570.r002

Author response to Decision Letter 1


4 Aug 2026

Response to the Editor and Reviewers

Manuscript title: Association of IL16 rs11556218 and IL1B rs16944 polymorphisms with type 2 diabetes in the Kinh Vietnamese population

Manuscript ID: PONE-D-26-21867

Dear Academic Editor and Reviewers,

We sincerely thank the Academic Editor and the Reviewers for their careful evaluation of our manuscript and for their constructive comments. We have carefully considered each comment and revised the manuscript accordingly. Our point-by-point responses are provided below. The Reviewers’ comments are reproduced in bold, followed by our responses. All revisions are visible in the marked-up version labeled “Revised Manuscript with Track Changes.” The line numbers cited in our responses refer to the clean revised version labeled “Manuscript.”

We hope that the revisions have adequately addressed the concerns raised and improved the clarity and rigor of the manuscript.

Response to Reviewer #1

We sincerely thank you for the careful assessment of our manuscript and for the constructive comments and suggestions. We have addressed each comment as detailed below.

Major Comments

Comment 1: The adjusted analyses include only BMI and WHR as covariates. Given the significant differences in family history of diabetes and other metabolic characteristics between groups, the rationale for selecting only BMI and WHR should be justified. The authors should consider additional multivariable analyses, including family history and other clinically relevant covariates, to assess the robustness of the reported associations.

Response:

Thank you for this helpful suggestion. We agree that family history of diabetes is a well-established risk factor for T2DM and should be considered in the adjusted analyses. Accordingly, we repeated the adjusted analyses by including family history of diabetes as an additional covariate, together with BMI and WHR. The effect estimates remained largely unchanged after this additional adjustment, indicating that they were not materially affected by the inclusion of family history of diabetes.

We did not include the other metabolic characteristics solely because they differed significantly between the T2DM and control groups, as a between-group difference does not necessarily indicate confounding. Fasting plasma glucose directly reflects glycemic status and is closely related to the classification of participants as cases or controls. Blood pressure, lipid parameters, and serum creatinine may reflect metabolic abnormalities associated with T2DM, diabetes-related consequences, or the effects of treatment after diagnosis. Adjusting for these variables could therefore result in over-adjustment and potentially attenuate the genotype–T2DM associations under investigation.

Changes in the manuscript:

Family history of diabetes was added as a covariate in the adjusted analyses in the Statistical Analysis section. The adjusted ORs, 95% CIs, and P values were updated in Tables 3 and 4 and in the corresponding Results subsections for IL16 rs11556218 and IL1B rs16944. The Abstract, Discussion, and Conclusion were also revised to reflect the additional adjustment and the updated estimates.

Comment 2: The rationale for simultaneously adjusting for BMI and WHR should be clarified, as both variables are related measures of adiposity and may lead to over-adjustment in genetic association analyses.

Response:

Thank you for raising this important point. BMI and WHR were included because they reflect different aspects of adiposity: BMI indicates overall adiposity, whereas WHR reflects abdominal fat distribution. Both are associated with the risk of type 2 diabetes and may therefore influence the estimated associations between the polymorphisms and T2DM.

We assessed multicollinearity between BMI and WHR before including them simultaneously in the adjusted analyses. As shown in Table 5, both variables had a tolerance value of 0.719 and a VIF of 1.39, indicating no evidence of meaningful multicollinearity. We therefore retained both variables in the adjusted analyses to account for both overall adiposity and abdominal fat distribution.

Changes in the manuscript:

The Statistical Analysis section was revised to explain that BMI and WHR were included because they reflect overall adiposity and abdominal fat distribution, respectively. The wording describing the VIF assessment was also clarified, and Table 5 was retitled “Assessment of multicollinearity between BMI and WHR.”

Comment 3: The manuscript does not address multiple testing despite evaluating two polymorphisms under several inheritance models. The authors should perform an appropriate correction for multiple comparisons or justify why such a correction was not applied.

Response:

Thank you for raising this important issue. We applied a Bonferroni correction to account for the eight primary adjusted association tests arising from the evaluation of two polymorphisms under four genetic models. Accordingly, the corrected significance threshold was set at P < 0.00625 (0.05/8). None of the associations met this threshold. The smallest nominal P values were 0.0081 for the log-additive model of rs11556218 and 0.0089 for the recessive model of rs16944, both of which exceeded the Bonferroni-corrected threshold. The original P values have been retained for transparency, but findings with nominal P values <0.05 are now described as nominal associations and interpreted as exploratory. The interpretation of the findings has been revised throughout the manuscript accordingly.

Changes in the manuscript:

The Bonferroni correction and the corrected significance threshold were added to the Statistical Analysis section. The Abstract, Results, Discussion, and Conclusion were revised to distinguish nominal associations from findings meeting the corrected threshold. The footnotes to Tables 3 and 4 were also revised to state that no adjusted association remained statistically significant after Bonferroni correction.

Comment 4: The authors should discuss the possibility of residual population stratification and clarify whether any measures were taken to minimise this bias.

Response:

Thank you for this suggestion. The possibility of residual population stratification cannot be totally excluded, and we tried to minimise this bias by recruiting only Kinh Vietnamese in this study.

Changes in the manuscript:

This point was added to the Discussion part in line 383.

Comment 5: Controls were classified as non-diabetic based on fasting plasma glucose <100 mg/dL and absence of a prior diabetes diagnosis. Since HbA1c values are not reported for controls and do not appear to have been used in the eligibility criteria, some individuals with undiagnosed diabetes or prediabetes may have been misclassified. Please clarify whether HbA1c testing was performed in controls and discuss the potential impact of misclassification bias.

Response:

We appreciate this suggestion. HbA1c testing was not performed in the control group. Controls were selected based on the absence of a previous diagnosis of diabetes and a fasting plasma glucose level <100 mg/dL at enrollment, as stated in the Materials and Methods section. Although this criterion excluded individuals whose fasting plasma glucose levels met the thresholds for impaired fasting glucose or diabetes at enrollment, it could not exclude dysglycemia detectable only by HbA1c or an oral glucose tolerance test. We therefore acknowledge that some individuals with undiagnosed prediabetes or, less likely, diabetes may have been included in the control group. This potential misclassification may have reduced the contrast between the two groups and biased the estimated genotype–T2DM associations toward the null.

Changes in the manuscript:

The Clinical and Biochemical Assessment subsection was revised to state that HbA1c was measured only in participants with T2DM and was unavailable for controls. The absence of HbA1c and oral glucose tolerance testing in controls, together with the potential impact of misclassification bias, was added as a limitation in the Discussion.

Minor Comments

Comment 6: Please clarify whether the study should be described as a case-control design rather than a cross-sectional study.

Response:

We appreciate this comment and the opportunity to clarify the study design. We have clarified the design as an analytical cross-sectional study because all participants were recruited during the same defined study period, and their diabetes status, clinical and biochemical characteristics, and genetic data were assessed at a single point in time at enrollment. Participants were classified into T2DM and non-T2DM comparison groups according to their diabetes status at the time of assessment. No longitudinal follow-up or retrospective ascertainment of exposure was performed.

Although equal numbers of participants were included in the two groups, this reflected the planned sampling allocation rather than individual matching. Participants with T2DM were not individually matched to those without T2DM according to age, sex, or other characteristics. The study design and the formation of the comparison groups have been clarified in the Materials and Methods section.

Changes in the manuscript:

The study design was specified as an analytical cross-sectional study in the Abstract, the Study Design and Participants subsection, the Discussion, and the Conclusion.

Comment 7: Consider including HWE p-values directly in the genotype frequency table.

Response:

Thank you for this helpful suggestion. The HWE P values for both polymorphisms have been added directly to the genotype frequency table. HWE was assessed in the control group using an exact test, with P values of 0.63 for IL16 rs11556218 and 0.15 for IL1B rs16944. The separate supplementary table reporting these results was removed to avoid duplication.

Changes in the manuscript:

A column presenting the control-group HWE P values was added to Table 2. The citation in the Results subsection “Genotype distributions and Hardy–Weinberg equilibrium” was changed from “Supplementary Table” to “Table 2,” and the separate supplementary HWE table was removed.

Reviewer #2: We sincerely thank you for the thoughtful evaluation of our manuscript and for recognizing the relevance and novelty of our population-specific data, as well as the adequacy of the sample size and power calculations. We greatly appreciate the constructive comments, which have helped us further strengthen the manuscript. Our point-by-point responses are provided below.

Comment 1: The authors adjusted only for BMI and WHR, yet Table 1 reveals numerous additional significant differences between cases and controls, including triglycerides, HDL cholesterol, blood pressure, and family history of diabetes. While BMI and WHR are appropriate adiposity measures, the rationale for excluding other potential confounders, particularly family history (a strong, well-established T2DM risk factor) and metabolic traits integral to disease pathophysiology, is not adequately justified. If these variables are considered mediators on the causal pathway between the genetic variants and T2DM, their exclusion from the model may be appropriate; however, this should be explicitly stated.

Response:

We appreciate this thoughtful comment. We agree that family history of diabetes is a well-established risk factor for T2DM and should be considered in the adjusted analyses. We therefore repeated the adjusted analyses with family history of diabetes included as an additional covariate, together with BMI and WHR. The effect estimates remained largely unchanged after this additional adjustment, indicating that they were not materially affected by the inclusion of family history of diabetes.

The remaining metabolic variables were not included solely on the basis of their significant differences between the T2DM and control groups, as a between-group difference does not necessarily indicate confounding. Fasting plasma glucose directly reflects glycemic status and is closely related to the classification of participants as having or not having T2DM. Blood pressure and lipid parameters may represent concurrent metabolic abnormalities, lie downstream of the disease process, or be influenced by treatment after diagnosis. We therefore did not consider these variables appropriate baseline confounders for the associations between the polymorphisms and T2DM. Adjusting for them could result in over-adjustment and potentially attenuate the associations under investigation. This rationale has been clarified in the revised manuscript.

Changes in the manuscript:

Family history of diabetes was added as a covariate in the adjusted analyses, and the rationale for covariate selection was clarified in the Statistical Analysis section. The adjusted ORs, 95% CIs, and P values were updated in Tables 3 and 4 and in the corresponding Results subsections. The Abstract, Discussion, and Conclusion were also revised to reflect the additional adjustment and updated estimates.

Comment 2: The authors tested two SNPs under four genetic models (8 primary tests). No correction for multiple comparisons (e.g., Bonferroni) is applied. While exploratory, this should be acknowledged as a limitation. The authors should either apply a correction and reinterpret results, or explicitly state that these are exploratory findings.

Response:

We appreciate this comment. As suggested, we applied a Bonferroni correction to the eight primary two-sided adjusted association tests corresponding to two SNPs evaluated under four genetic models. This yielded a corrected significance threshold of P < 0.00625 (0.05/8). Although several associations had nominal P values below 0.05, none remained statistically significant after correction. We have retained the original P values for transparency but revised the manuscript to describe these findings as nominal associations, interpret them as exploratory, and emphasize the need for independent replication.

Changes in the manuscript:

The Bonferroni correction was described in the Statistical Analysis section. The interpretation of the findings was revised in the Abstract, Results, Discussion, and Conclusion, and explanatory footnotes were added to Tables 3 and 4.

Comment 3: Controls were defined as having FPG < 100 mg/dL at enrollment. Were an oral glucose tolerance test or HbA1c performed to exclude prediabetes? If not, some controls may have undiagnosed dysglycemia (impaired fasting glucose or prediabetes), which could bias results toward the null. This should be acknowledged as a limitation.

Response:

We appreciate this comment. Neither HbA1c testing nor an oral glucose tolerance test was performed in the control group. Controls were selected based on the absence of a previous diagnosis of diabetes and a fasting plasma glucose level <100 mg/dL at enrollment. Although this criterion excluded individuals whose fasting plasma glucose levels met the thresholds for impaired fasting glucose or diabetes at enrollment, it could not exclude dysglycemia detectable only by HbA1c or an oral glucose tolerance test. We therefore acknowledge that some individuals with undiagnosed prediabetes or, less likely, diabetes may have been included in the control group. This potential misclassification may have reduced the contrast between the two groups and biased the estimated genotype–T2DM associations toward the null.

Changes in the manuscript:

The Clinical and Biochemical Assessment subsection was revised to clarify that HbA1c was measured only in participants with T2DM and was unavailable for controls. The absence of HbA1c and oral glucose tolerance testing in controls, together with the potential impact of misclassification bias, was added as a limitation in the Discussion.

Comment 4: Abstract (lines 41) states the TG genotype was significant in the codominant model (adjusted OR = 0.54). However, Results (lines 230-231) show the crude OR for TG is 0.56, but the unadjusted P value in the abstract seems inconsistent with the full results. Please verify all abstract figures match the full text.

Response:

We appreciate this careful observation. We verified all numerical results reported in the Abstract against the corresponding crude and adjusted analyses in the full text and Tables 3 and 4. The Abstract has been corrected to distinguish the crude and adjusted estimates and to ensure consistency with the revised analyses. Specifically, the adjusted codominant model is now reported with an overall P value of 0.026, while the genotype-specific comparison of TG versus TT yielded an adjusted OR of 0.56 (95% CI: 0.32–0.98). The results for the dominant and log-additive models of IL16 rs11556218 and the recessive model of IL1B rs16944 were also updated to match Tables 3 and 4. These findings are now described as nominal associations because none met the Bonferroni-corrected significance threshold.

Changes in the manuscript:

The adjusted ORs, 95% CIs, and P values in the Results portion of the Abstract were corrected and updated to match Tables 3 and 4. The Abstract was also revised to identify these findings as nominal associations that did not meet the Bonferroni-corrected significance threshold.

Comment 5: The Kinh are the majority ethnic group, but Vietnam has substantial ethnic diversity. The authors should clarify how participants were recruited. Were they recruited consecutively, randomly, or via convenience sampling? Was the hospital a tertiary referral center? If so, cases may be more severe, potentially influencing results.

Response:

Thank you for highlighting this issue. Participants were recruited using convenience sampling at the Outpatient Department of Cho Ray Hospital. Cho Ray Hospital is a tertiary referral hospital that receives patients from Ho Chi Minh City and other provinces in southern Vietnam. Because the study specifically aimed to investigate the two polymorphisms in the Kinh Vietnamese population, only Kinh Vietnamese individuals were included.

We acknowledge that convenience sampling at a tertiary referral hospital may have introduced selection bias. Participants with T2DM attending this setting may have had longer disease duration, more complex glycemic management, or a greater burden of comorbidities and complications than those managed in primary care or community settings. Therefore, the study sample may not be fully representative of the broader community-based Kinh Vietnamese population. The recruitment method and hospital setting have been clarified in the Materials and Methods section, and the potential selection bias and limited generalizability have been acknowledged in the Discussion.

Changes in the manuscript:

The use of convenience sampling and the tertiary referral setting of Cho Ray Hospital were specified in the Study Design and Participants subsection. The potential for selection bias and limited generalizability to the broader community-based Kinh Vietnamese population were added as limitations in the Discussion.

Comment 6: Line 195-196: VIF < 2 is acceptable, but why were only BMI and WHR included? This should be clarified earlier.

Response:

We appreciate this comment. Family history of diabetes has now been added as an additional covariate in the adjusted analyses. The rationale for selecting BMI and WHR has also been clarified earlier in the Statistical Analysis section. BMI and WHR were included because they reflect different aspects of adiposity: BMI reflects overall adiposity, whereas WHR reflects abdominal fat distribution. As shown in Table 5, the VIF value of 1.39 indicated no evidence of meaningful multicollinearity between BMI and WHR.

Changes in the manuscript:

The Statistical Analysis section was revised to specify adjustment for BMI, WHR, and family history of diabetes and to explain why BMI and WHR were both included. Table 5 was retitled to specify that the multicollinearity assessment concerned BMI and WHR.

Comment 7: Total cholesterol and LDL are lower in cases. This is unusual in T2DM, which typically presents with dyslipidemia (high LDL, low HDL). Is this because patients are on statins? The authors don't mention medication use. This could be a major confounder and should be addressed.

Response:

We appreciate this important observation. Information on statin use was not systematically collected in this study; therefore, we cannot determine the proportion of participants receiving statins or formally assess their effect on lipid levels. In our clinical setting, statin therapy is routinely prescribed to eligible patients with T2DM as part of guideline-based care. It is therefore plausible that lipid-lowering treatment contributed to the lower total cholesterol and LDL cholesterol levels observed in the T2DM group.

We acknowledge that the absence of detailed medication data prevents us from distinguishing the effect of statin therapy from the underlying lipid profile of the participants. The lipid findings should therefore be interpreted with caution. This explanation and limitation have been added to the Discussion.

Changes in the manuscript:

The possible contribution of statin therapy to the lower total cholesterol and LDL cholesterol levels in the T2DM group was discussed in the paragraph describing the participants’ clinical and metabolic profiles. The absence of systematically collected information on lipid-lowering medication use and its impact on interpretation of the lipid findings was also acknowledged in the limitations paragraph.

Attachment

Submitted filename: Response to Reviewers.docx

pone.0358570.s004.docx (28.1KB, docx)

Decision Letter 1

Milad Khorasani

2 Sep 2026

<p>ASSOCIATION OF IL16 rs11556218 AND IL1B rs16944 POLYMORPHISMS WITH TYPE 2 DIABETES IN THE KINH VIETNAMESE POPULATION

PONE-D-26-21867R1

Dear Dr. Duc Do,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

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Reviewers' comments:

Reviewer's Responses to Questions

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Reviewer #2: All comments have been addressed

Reviewer #3: (No Response)

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2. Is the manuscript technically sound, and do the data support the conclusions??>

Reviewer #2: Yes

Reviewer #3: Yes

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Reviewer #2: Yes

Reviewer #3: Yes

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Reviewer #2: No

Reviewer #3: Yes

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Reviewer #2: Yes

Reviewer #3: Yes

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Reviewer #2: Thank you, author, for submitting a revised manuscript and for the detailed responses to the concerns raised during the initial review. I have carefully evaluated the revisions and am pleased to see that the author has addressed the major issues thoroughly and thoughtfully. I also note that the author has corrected minor discrepancies between the abstract and the results and has expanded the discussion to provide more context on potential biological mechanisms and population-specific considerations. These improvements enhance the clarity and completeness of the manuscript.

Reviewer #3: The authors have addressed the major concerns raised in the previous round, and the revised manuscript has been substantially improved. In particular, the authors have appropriately addressed multiple testing by applying a Bonferroni correction, added family history of diabetes to the adjusted analyses, clarified the rationale for covariate selection, and acknowledged the limitations related to control classification, convenience sampling, and lack of systematic information on statin use.

However, I recommend a final careful check of the revised manuscript before publication.

The interpretation of the genetic associations should be fully consistent with the Bonferroni correction. The authors state in their response that none of the associations remained statistically significant after correction and that the findings should therefore be considered nominal and exploratory. However, the Abstract provided in the revised manuscript still uses expressions such as “significant differences” and “remained significantly associated.” These statements should be revised to consistently describe the findings as nominal associations or exploratory findings, as appropriate.

The Abstract should be carefully cross-checked against the revised Tables and Results to ensure that all adjusted ORs, 95% CIs, and P values are identical and that the distinction between nominal P values and Bonferroni-corrected statistical significance is clearly maintained.

The Methods and Abstract should also be checked for consistency regarding the covariates included in the adjusted analyses. The revised response indicates that BMI, WHR, and family history of diabetes were included, whereas the Abstract currently mentions adjustment only for BMI and WHR.

The terminology used throughout the manuscript should be standardized. In particular, the terms “statistically significant association,” “nominal association,” and “exploratory finding” should be used consistently and in accordance with the Bonferroni-corrected threshold.

Subject to these minor corrections and a final consistency check of the manuscript, I consider the study technically sound and the revised analyses generally appropriate.

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Reviewer #2: No

Reviewer #3: No

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Acceptance letter

Milad Khorasani

PONE-D-26-21867R1

PLOS One

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Data. Full data.

    (XLSX)

    pone.0358570.s001.xlsx (66.8KB, xlsx)
    Attachment

    Submitted filename: Review Comments 20-06-26.docx

    pone.0358570.s002.docx (12.5KB, docx)
    Attachment

    Submitted filename: Response to Reviewers.docx

    pone.0358570.s004.docx (28.1KB, docx)

    Data Availability Statement

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