Abstract
The Drosophila caudal homeobox gene is required for definition of the anteroposterior axis and for gut development, and CDX1 and CDX2, human homologs, play crucial roles in the regulation of cell proliferation and differentiation in the intestine. Most studies have indicated tumor suppressor functions of Cdx2, with inhibition of proliferation, while the effects of Cdx1 are more controversial. The influence of Drosophila Caudal on cell proliferation is unknown. In this study, we found three potential Caudal binding sequences in the 5′-flanking region of the Drosophila E2F (DE2F) gene and showed by transient transfection assays that they are involved in Caudal transactivation of the dE2F gene promoter. Analyses with transgenic flies carrying an E2F-lacZ fusion gene, with and without mutation in the Caudal binding site, indicated that the Caudal binding sites are required for expression of dE2F in living flies. Caudal-induced E2F expression was also confirmed with a GAL4-UAS system in living flies. In addition, ectopic expression of Caudal with heat-shock promotion induced melanotic tumors in larvae. These results suggest that Caudal is involved in regulation of proliferation through transactivation of the E2F gene in Drosophila.
INTRODUCTION
Homeobox genes generally encode for transcription factors involved in developmental, proliferation and differentiation processes (1,2). The Drosophila caudal example is required for definition of the anteroposterior axis during early embryogenesis (3), and for gut development (4). When caudal activity is completely lacking, the hindgut and anal pads are almost absent.
In vertebrates, Drosophila caudal-related homeobox genes have also been characterized: Xcad-1, Xcad-2 and Xcad-3 in Xenopus laevis; CdxA, CdxB and CdxC in chicken; Cdx-1, Cdx-2 and Cdx-4 in mice; and CDX1 and CDX2 in the human (5). Cdx1 and Cdx2 are known to play crucial roles in the regulation of cell proliferation and differentiation in the intestine (6). Cdx1 is mainly expressed in undifferentiated crypt cells, while Cdx2 is expressed at a higher level in the differentiated villus tip (7). Most studies have indicated a tumor suppressor function of Cdx2, which inhibits proliferation (8,9). However, the effects of Cdx1 on cell proliferation are controversial and it has been reported to exert oncogenic potential by upregulating ras (10). Such ras activation is considered to be an early event in genesis of colorectal cancers and results in altered cell growth and differentiation (11,12). Recently, however, Cdx1 was also reported to inhibit proliferation of intestinal epithelial cells, by down-regulation of D-type cyclins (13).
Whether Drosophila caudal plays a role in the regulation of proliferation is unknown. Interestingly, we found three putative Caudal binding site-related sequences, A/CTTTATA/G (14), in the 5′-flanking region of the Drosophila E2F (dE2F) gene, encoding a transcription factor playing important roles in cell proliferation (15). Well known targets of E2F are critical for cell-cycle progression and DNA synthesis. These include cell-cycle regulators, such as cyclin E, cyclin A, cdc2, cdc25 and Myc, and DNA replication-related genes, such as DNA polymerase α, thymidine kinase, PCNA and ribonucleotide reductase (16). The basic unit of E2F is a heterodimer of E2F and DP. In mammals, at least, six E2F family members (E2F-1 to -6) and two dimer partners (DP1 and DP2) have been characterized (17–21). Drosophila contains two E2Fs, dE2F and dE2F2, and one dimer partner, dDP (22–24). It has been reported that promoters of Drosophila genes encoding DNA polymerase α, PCNA and Raf contain the E2F recognition sequence (5′-TTTCGCGC), which is essential for promoter activity (25–28).
In the present study, since putative Caudal binding sites are located in the 5′-flanking region of the dE2F gene, we investigated involvement of the protein in transcriptional regulation. The results indicate that it can directly transactivate the dE2F gene promoter in vitro and in vivo.
MATERIALS AND METHODS
Oligonucleotides
The following double-stranded oligonucleotides containing a 6 bp linker sequence, recognized by BglII and BamHI, were chemically synthesized. Sequences containing three Caudal sites or base substitutional mutants in the E2F promoter region were as follows: E2F-Cad1 wild-type (wt), 5′-gatccTTTGGGATATTTATGAGTACAAACa-3′ and 3′-gAAA CCCTATAAATACTCATGTTTGtctag-5′; E2F-Cad1 mutant (mut), 5′-gatccTTTGGGATATGGCTGAGTACAAACa-3′ and 3′-gAAACCCTATACCGACTCATGTTTGtctag-5′; E2F- Cad2 wt, 5′-gatccACTTTTCTCTATAAAGTTGCAAATa-3′ and 3′-gTGAAAAGAGATATTTCAACGTTTAtctag-5′; E2F-Cad2 mut, 5′-gatccACTTTTCTCTAGCCAGTTGCAAATa- 3′ and 3′-gTGAAAAGAGATCGGTCAACGTTTAtctag-5′; E2F-Cad3 wt, 5′-gatccGGCATAATTTTTATGATACGTAGAa-3′ and 3′-gCCGTATTAAAAATACTATGCATCTtctag-5′; E2F-Cad3 mut, 5′-gatccGGCATAATTTGCCTGATACGTAGAa-3′ and 3′-gCCGTATTAAACGGACTATGCATCTtctag-5′.
Double-stranded oligonucleotides for site-directed mutagenesis were as follows: E2F-Cad1-SM, 5′-GCGATTTT GGGATATGGCTGAGTACAAACT-3′ and 3′-CACTTA AACCCTATACCGACTCATGTTTGA-5′; E2F-Cad2-SM, 5′-CTAACTTTTCTCTAGCCAGTTGCAAATCTT-3′ and 3′-GATTGAAAAGAGATCGGTCAACGTTTAGAA-5′; E2F- Cad3-SM, 5′-TCAGGCATAATTTGGCTGATACGTAGA AAT-3′ and 3′-AGTCCGTATTAAACCGACTATGCATCT TTA-5′. Mutated bases are underlined and lower case letters indicate the linker sequences recognizable by BglII and BamHI.
Plasmid construction
The promoter region of the dE2F gene was cloned by polymerase chain reaction (PCR) using Drosophila genomic DNA. Sequence analysis was performed to confirm the nucleotide sequence. The primers used, containing the linker sequences 5′-KpnI and 3′-XhoI were as follows: 5′-GCGG GTACCATGTGTTGGGCAAGGGAT-3′ and 3′-GCGGAG CTCGCACTGCAGTCGTCAAGC-5′. An amplified 2401 bp fragment containing the dE2F promoter region (–2184 to +217) was inserted into the KpnI and XhoI sites of pGL2-Basic (Promega) and the resulting reporter construct was designated as pE2F-Luc. To construct the plasmids pE2F-lacZ and pE2Fcadmut-lacZ for transgenic flies, the dE2F promoter region (–2184 to +217) with and without base-substituted mutations in the Caudal binding site were inserted into the KpnI site of the plasmid pCaSpeR-AUG-βgal (29).
The expression plasmid pAc-cad containing the Drosophila caudal coding region (1419 bp) placed under control of the Drosophila acin 5C gene promoter was constructed by inserting the coding region fragment into the XhoI site of pAc5.1/V5-HisA (Invitrogen). In the case of the GST-cad fusion plasmid, a caudal DNA fragment containing a DNA binding region of 729–976 bp downstream of the transcription start site (30) was inserted into the pGEX 4T-2 vector with XhoI. For construction of the plasmid pUAS-cad, the caudal coding region (1419 bp) was inserted into the XbaI and EcoRI sites of the pUAST vector (31).
Expression of GST fusion proteins and gel-mobility shift assays
Expression of GST-Cad fusion proteins in Escherichia coli was carried out as described previously (32). The E.coli were collected and suspended in a solution containing 25 mM HEPES pH 7.9, 1 mM EDTA, 0.02% 2-mercaptoethanol, 10% glycerol, 0.1% Tween-80 and 0.2 M KCl, sonicated and then centrifuged. The supernatant was loaded onto a glutathione–Sepharose column equilibrated with buffer A (20 mM Tris–HCl pH 7.8, 6% glycerol, 0.1 M KCl, 0.1 mM EDTA, 0.2% Tween-80 and 5 mM DTT) and washed with 20 ml of buffer A and 20 mM WE buffer (20 mM Tris–HCl pH 7.8, 2 mM MgCl2 and 1 mM DTT). Then the proteins were eluted with 20 ml of buffer G (50 mM Tris–HCl pH 9.6 and 5 mM glutathione), concentrated using Centricon 20 (Amicon) and dialyzed against PC buffer (50 mM Tris–HCl pH 7.8, 1 mM DTT and 0.1 mM EDTA) containing 0.15 M KCl and 50% glycerol. The purified proteins were stored at –20°C. Gel-mobility shift assays were performed as described previously (33). 32P-labeled probes were incubated for 15 min on ice in a reaction mixture containing 20 mM HEPES pH 7.5, 10 mM MgCl2, 1 mM EDTA, 10% glycerol, 0.5 mM DTT, 0.1 M KCl, 500 ng of sonicated herring sperm DNA and 500 ng of poly(dI–dC). For this step, unlabeled oligonucleotides were added as competitors. Then, 20 µg of purified GST fusion proteins were introduced followed by incubation for 10 min on ice. DNA–protein complexes were electrophoretically resolved on 6% polyacrylamide gels in 50 mM Tris–borate pH 8.3, 1 mM EDTA and 2.5% glycerol at 25°C. Gels were dried and then autoradiographed or analyzed with a BAS2000 (Fuji Film) imaging analyzer.
Cell culture, DNA transfection and luciferase assay
Drosophila S2 cells were grown at 25°C in M3 (BF) medium (Sigma) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (Gibco BRL). Transfection of DNA mixtures into S2 cells was performed using dimethyldioctadecyl ammonium bromide (DDAB) (34) and the cells were harvested at 48 h thereafter. The luciferase assay was carried out by means of a Luciferase Assay System (Promega), as described previously (35). Normalized luciferase activities were calculated by determining the luciferase/β-galactosidase activity ratios.
Site-directed mutagenesis
To obtain mutant reporter plasmids carrying base-substitution mutations in the Caudal binding sites in the 5′-flanking region of the Drosophila E2F gene, mutagenesis reactions were carried out on double-stranded DNA of pE2F-Luc using a QuickChange™ Site-Directed Mutagenesis Kit (Stratagene). The reactions were set up essentially as recommended by the manufacturer. The mutations, as well as the fidelity of the rest of the DNA were confirmed by sequencing or enzymatic manipulation.
Establishment of transgenic flies and fly stocks
For ectopic expression experiments, the GAL4-UAS system was used with Hsp70-GAL4 flies (hs-GAL4) provided by the Bloomington Stock Center. Seven independent transgenic lines carrying UAS-cad were generated with the plasmid pUAS-cad by P-element-mediated transformation (36). Although only data with the line carrying UAS-cad in the second chromosome are shown in this report, essentially the same results were obtained with the other lines. To examine the role of the Caudal binding sites for dE2F gene expression in vivo, three independent transgenic lines carrying E2F-lacZ and two independent lines carrying the E2Fcadmut-lacZ fusion gene were generated with pE2F-lacZ and pE2Fcadmut-lacZ constructs, respectively. The lines carrying the same fusion genes showed the same lacZ expression patterns. An E2Frm729 line in which P-element-lacZ was inserted upstream of the initiation site of the dE2F gene in the same orientation as dE2F gene was also used (27).
Ectopic expression of Caudal by heat-shock induction
Females carrying homozygous hs-GAL4 in the third chromosome were crossed with males carrying homozygous UAS-cad in the second chromosome. The progeny third larvae were heat shocked at 37°C for 30 min and then returned to 25°C.
RT–PCR
Total RNA from larvae was isolated with Trizol Reagent (Molecular Research Center, Inc.) according to the protocol furnished by the manufacturer and cDNAs were synthesized with M-MLV-RT (reverse transcriptase) (Promega). The RT–PCR products were analyzed on agarose gels stained with ethidium bromide.
X-gal staining
The tissues were dissected and fixed for 15 min in phosphate-buffered saline (PBS: 130 mM NaCl, 7 mM Na2HPO4·2H2O, 3 mM NaH2PO4·2H2O, pH 7.5) containing 5% glutaraldehyde, washed in PBS, and immersed in 0.2% 5-bromo-4-chloro-3-indolyl-β-d-galactopyranocyde (X-gal) in staining buffer containing 6.1 mM K4Fe(CN)6, 6.1 mM K3Fe(CN)6, 1 mM MgCl2, 150 mM NaCl, 10 mM Na2HPO4 and 10 mM NaH2PO4. Incubation was in the dark at 37°C.
RESULTS
Potential Caudal recognition sequences in the 5′-flanking region of the Drosophila E2F gene
We found three putative Caudal binding sites similar to the Caudal binding consensus sequences, A/CTTTATA/G in the 5′-flanking region of the dE2F gene (Fig. 1). They were named E2F-Cad1, E2F-Cad2 and E2F-Cad3. The E2F-Luc reporter plasmid containing the dE2F gene (–2184 to +217) was constructed as described in the Materials and Methods. To examine whether the Caudal protein can recognize the putative binding sites found in the dE2F promoter region, a gel-mobility shift assay was performed using recombinant GST-Cad fusion proteins. Oligonucleotides E2F-Cad1 wt, E2F-Cad2 wt and E2F-Cad3 wt, were used as probes. Binding of GST-Cad to the oligonucleotide E2F-Cad1 wt was detected and the DNA–protein complexes were diminished effectively by adding unlabeled oligonucleotides E2F-Cad 1 wt, but not oligonucleotide E2F-Cad1 mut carrying base substitutions in the Caudal core binding sequence (Fig. 2A). A complex between GST-Caudal and the oligonucleotide E2F-Cad2 wt was detected (Fig. 2B) and diminished by adding excess amounts of unlabeled E2F-Cad2 wt. Such competition was not evident with E2F-Cad2 mut. The complex was also detected when the assay was performed with the radiolabeled E2F-Cad3 wt oligonucleotide as probe (Fig. 2C). Unlabeled oligonucleotide E2F-Cad3 wt competed with the formation of complex, whereas unlabeled E2F-Cad3 mut did not. The results indicate that GST-Caudal binds to E2F-Cad1, E2F-Cad2 and E2F-Cad3 binding sites with sequence specificity.
Activation of the dE2F gene promoter by Caudal
Since GST-Cad binds to the three potential Caudal binding sites in the 5′-flanking region of the dE2F gene, we investigated whether the Caudal homeodomain protein can regulate activity of the dE2F promoter, using a pE2F-Luc reporter plasmid containing the promoter region (–2184 to +217) of the dE2F gene fused with the luciferase reporter gene. Effects of Caudal on dE2F gene promoter activity were examined in transient transfection experiments using pE2F-Luc reporter plasmids and a pAc-cad expression plasmid in the Drosophila S2 cell line. The wild-type dE2F promoter was transactivated depending on the amount, up to nearly 4- or 5-fold, of pAc-cad (Fig. 3A). For further confirmation of Caudal binding sites as targets of Caudal, the mutant reporter plasmids, pE2F-Cad1mut-Luc, pE2F-Cad2mut-Luc and pE2F-Cad3mut-Luc having the same mutation as those used for the gel-mobility shift assay, and the E2F-Cad1,2,3mut-Luc having base-substitution mutations in all three Caudal binding sites were constructed and used for reporter assays. As shown in Figure 3B, mutant reporter plasmids showed little activation with Caudal expression plasmids. A comparison between promoter activities of dE2F mutants and the wild type revealed no alteration in promoter activity (data not shown). These observations can be explained by the results of RT–PCR analysis in Drosophila S2 cells, by which Drosophila caudal mRNA was barely detectable (data not shown). Thus, Caudal apparently activates the dE2F promoter and this is mediated by the Caudal binding sites in the dE2F promoter.
Role of the Caudal binding sites in expression of dE2F in living flies
To investigate the role of the Caudal sites for expression of dE2F in living flies, we established transgenic flies carrying the dE2F-lacZ fusion gene, containing the dE2F promoter region (–2184 to +217) fused to lacZ, or E2Fcadmut-lacZ with base-substituted mutations in the Caudal binding sites of the dE2F promoter. Drosophila caudal is known to be expressed in the posterior midgut, Malpighian tubules and hindgut of the embryo (4) and in the anal plates and hindgut of adult flies (37). Therefore, we compared expression patterns of lacZ in the gut of adult flies carrying E2F-lacZ and E2Fcadmut-lacZ by X-gal staining. The lacZ staining signals of adult flies carrying the E2Fcadmut-lacZ were markedly decreased in the posterior midgut and the hindgut (Fig. 4B and C). Endogenous β-galactosidase expression was detected in the anterior part and the central region of the midgut (Fig. 4A). This result indicates that the Caudal binding sites are required for dE2F gene expression in the posterior midgut and the hindgut.
Effects of ectopic Caudal expression on the expression of dE2F
Ectopic expression of Caudal in living flies was performed with the GAL4-UAS system (31,38). The coding region of caudal was subcloned into the pUAST vector, and the resultant plasmid was designated pUAS-cad. We established transgenic flies for ectopic expression of Caudal with the pUAS-cad construct by P-element-mediated transformation (36). Transgenic flies carrying UAS-cad were crossed with transgenic flies carrying GAL4 cDNA placed under control of the hsp70 gene promoter (hs-GAL4). Ectopic expression of Caudal in the transgenic larvae after heat shock was confirmed by RT–PCR (Fig. 5). The caudal mRNA in larvae carrying single copies of hs-GAL4 and UAS-cad was detected at 1 h after heat shock and its level increased with time to reach a maximum at 3 h (Fig. 5). However, caudal mRNA in larvae carrying only UAS-cad was not detected at any time (Fig. 5). As mentioned above, we examined the dE2F expression in larvae carrying hs-GAL4 and UAS-cad by RT–PCR. The expression level of dE2F was increased at 3 h after heat shock (Fig. 5).
To investigate the effects of ectopic Caudal expression on the dE2F gene expression in vivo, we made a UAS-cad/+;E2Frm729/hs-GAL4 line by crossing E2Frm729 flies, in which lacZ is inserted upstream of the initiation site of the dE2F gene, with transgenic flies carrying UAS-cad with the hs-GAL4 line. The third instar larvae of the UAS-cad/+;E2Frm729/hs-GAL4 line were heat shocked at 37°C for 30 min and incubated at 25°C for 8 h. Then, they were dissected and X-gal staining was carried out. Expression of the lacZ gene in the heat-shocked UAS-cad/+;E2Frm729/hs-GAL4 larvae was increased dramatically in fat bodies by overexpressed Caudal (Fig. 6B).
Effects of the ectopic Caudal expression during development were also analyzed with transgenic flies carrying hs-GAL4 and UAS-cad. Heat-shock induction of Caudal caused generation of melanotic tumors (Fig. 7), indicating that overexpression can result in abnormal proliferation and differentiation.
DISCUSSION
In this study, we found three Caudal binding sites in the 5′-flanking region of the dE2F gene (Fig. 1) and demonstrated their requirement for in vivo expression of the dE2F gene. Thus, the homeodomain protein Caudal positively regulates the cell proliferation-related gene dE2F at the transcriptional level.
Caudal-related homeodomain proteins bind to an AT-rich sequence of A/CTTTATA/G (14). Drosophila caudal is expressed in the posterior region of the embryo during early embryogenesis and activates the segmentation gene, fushi tarazu, involved in terminal specification (39). Maternal and zygotic caudal products are known to exert their function through activation of folded gastrulation, fork head and wingless (4). Caudal can induce Distal-less gene expression and internal analia development by activating the brachyenteron and even-skipped genes (37). Cdx1 and Cdx2, mammalian homologs of the Drosophila caudal gene, are mainly expressed in the intestine and colon where they appear to be involved in the regulation of cell proliferation and differentiation (40). Cdx1 expression is restricted to the proliferative crypt compartment (41), while Cdx2 is found at high levels in the differentiated cells of villus tip (42). The several targets of Cdx2 include the Hox-C8 homeobox gene (43), the small intestinal genes encoding sucrase-isomaltase (44), lactase-phlorizin hydrolase (45), phospholipase-A (46), calbindin-D9K (47), the colonic gene for carbonic anhydrase I (48), and the genes encoding insulin and glucagon in the pancreas (49). These are all differentiation-related, supporting a tumor suppressor function of Cdx2 inhibiting proliferation (8,9). In the case of Cdx1, only Hox-A7 has been shown as a direct target (50). Overexpression of Cdx1 in non-intestinal cells increases cell growth in vitro and promotes cell tumorigenicity in xenografts (2), which suggests oncogenic potential. Intestinal metaplasia in gastric and esophagal tumors is associated with ectopic expression of Cdx1 (51) and recently we reported CDX1 to have a pro-proliferative effect through transactivation of the PCNA promoter activity (52). Here, we demonstrated that Caudal directly transactivates the dE2F gene promoter activity. E2F is a key regulator of cell proliferation. The well known targets of E2F are critical for cell-cycle progression and DNA synthesis, such as cyclin E, cyclin A, cdc2, cdc25, Myc, DNA polymerase α, thymidine kinase, PCNA and ribonucleotide reductase (16). Therefore, our results indicate that Drosophila Caudal may be involved in cell proliferation by regulating dE2F gene expression so that its function is similar to that of Cdx1 rather than Cdx2.
Recently, it was reported that both E2F and DP mutant larvae exhibit development of melanotic tumors (53). Interestingly, we also observed that ectopic Caudal expression under the control of the heat-shock promoter leads to death in the developmental stage and generation of melanotic tumor in third instar larvae (Fig. 7). It has been proposed that two distinct classes of melanotic tumor mutations exist (54). Class 1 affect autoimmune responses or the normal immune system reaction to abnormal target tissue. Class 2, in contrast, cause obvious defects in the hematopoietic organs or hemocytes, resulting in aberrant immunity, contributing to melanotic tumor formation. In the present case, upregulation of E2F expression by ectopic Caudal induced under hs-GAL4/UAS-cad was detected especially in the fat body (Fig. 6), which is responsible for immune response in Drosophila (55). We have also found that caudal is expressed in the fat body and is involved in the immune response of Drosophila (M.-A. Yoo and W.-J. Lee, unpublished results). Further studies to investigate the roles of Caudal and E2F in the development of melanotic tumors are clearly warranted.
Acknowledgments
ACKNOWLEDGEMENTS
We are grateful to Dr N. Dyson and Bloomington Stock Center for E2Frm729 and hs-GAL4 and thank Dr M. Moore for valuable comments on the manuscript. This work was supported by a grant (F-4-09) from the 21C Frontier Functional Human Genome Project of the Ministry of Science and Technology of Korea.
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