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American Journal of Human Genetics logoLink to American Journal of Human Genetics
. 1980 May;32(3):314–331.

Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

D Botstein, R L White, M Skolnick, R W Davis
PMCID: PMC1686077  PMID: 6247908

Abstract

We describe a new basis for the construction of a genetic linkage map of the human genome. The basic principle of the mapping scheme is to develop, by recombinant DNA techniques, random single-copy DNA probes capable of detecting DNA sequence polymorphisms, when hybridized to restriction digests of an individual's DNA. Each of these probes will define a locus. Loci can be expanded or contracted to include more or less polymorphism by further application of recombinant DNA technology. Suitably polymorphic loci can be tested for linkage relationships in human pedigrees by established methods; and loci can be arranged into linkage groups to form a true genetic map of "DNA marker loci." Pedigrees in which inherited traits are known to be segregating can then be analyzed, making possible the mapping of the gene(s) responsible for the trait with respect to the DNA marker loci, without requiring direct access to a specified gene's DNA. For inherited diseases mapped in this way, linked DNA marker loci can be used predictively for genetic counseling.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Alper C. A., Boenisch T., Watson L. Genetic polymorphism in human glycine-rich beta-glycoprotein. J Exp Med. 1972 Jan;135(1):68–80. doi: 10.1084/jem.135.1.68. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bird A. P. Use of restriction enzymes to study eukaryotic DNA methylation: II. The symmetry of methylated sites supports semi-conservative copying of the methylation pattern. J Mol Biol. 1978 Jan 5;118(1):49–60. doi: 10.1016/0022-2836(78)90243-7. [DOI] [PubMed] [Google Scholar]
  3. Bissbort S., Kömpf J. Red-cell galactose-1-phosphate-uridyl transferase (EC: 2.7.7.12). Formal genetics and linkage relations. Humangenetik. 1973 Mar 23;18(1):93–94. doi: 10.1007/BF00279038. [DOI] [PubMed] [Google Scholar]
  4. Brutlag D., Fry K., Nelson T., Hung P. Synthesis of hybrid bacterial plasmids containing highly repeated satellite DNA. Cell. 1977 Mar;10(3):509–519. doi: 10.1016/0092-8674(77)90038-1. [DOI] [PubMed] [Google Scholar]
  5. CLEGHORN T. E. MNSs gene frequencies in English blood donors. Nature. 1960 Aug 20;187:701–701. doi: 10.1038/187701a0. [DOI] [PubMed] [Google Scholar]
  6. Cameron J. R., Loh E. Y., Davis R. W. Evidence for transposition of dispersed repetitive DNA families in yeast. Cell. 1979 Apr;16(4):739–751. doi: 10.1016/0092-8674(79)90090-4. [DOI] [PubMed] [Google Scholar]
  7. Cannings C., Skolnick M. H., de Nevers K., Sridharan R. Calculation of risk factors and likelihoods for familial diseases. Comput Biomed Res. 1976 Aug;9(4):393–407. doi: 10.1016/0010-4809(76)90058-6. [DOI] [PubMed] [Google Scholar]
  8. Carter N. D., Fildes R. A., Fitch L. I., Parr C. W. Genetically determined electrophoretic variations of human phosphogluconate dehydrogenase. Acta Genet Stat Med. 1968;18(2):109–122. doi: 10.1159/000152126. [DOI] [PubMed] [Google Scholar]
  9. Cartwright G. E., Edwards C. Q., Kravitz K., Skolnick M., Amos D. B., Johnson A., Buskjaer L. Hereditary hemochromatosis. Phenotypic expression of the disease. N Engl J Med. 1979 Jul 26;301(4):175–179. doi: 10.1056/NEJM197907263010402. [DOI] [PubMed] [Google Scholar]
  10. Chen S. H., Giblett E. R., Anderson J. E., Fossum B. L. Genetics of glutamic-pyruvic transaminase: its inheritance, common and rare variants, population distribution, and differences in catalytic activity. Ann Hum Genet. 1972 Apr;35(4):401–409. [PubMed] [Google Scholar]
  11. Daiger S. P., Labowe M. L., Parsons M., Wang L., Cavalli-Sforza L. L. Detection of genetic variation with radioactive ligands. III. genetic polymorphism of transcobalamin II in human plasma. Am J Hum Genet. 1978 Mar;30(2):202–214. [PMC free article] [PubMed] [Google Scholar]
  12. Elston R. C., Stewart J. A general model for the genetic analysis of pedigree data. Hum Hered. 1971;21(6):523–542. doi: 10.1159/000152448. [DOI] [PubMed] [Google Scholar]
  13. Giblett E. R., Anderson J. E., Chen S. H., Teng Y. S., Cohen F. Uridine monophosphate kinase: A new genetic polymorphism with possible clinical implications. Am J Hum Genet. 1974 Sep;26(5):627–635. [PMC free article] [PubMed] [Google Scholar]
  14. Goodman H. M., Olson M. V., Hall B. D. Nucleotide sequence of a mutant eukaryotic gene: the yeast tyrosine-inserting ochre suppressor SUP4-o. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5453–5457. doi: 10.1073/pnas.74.12.5453. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Grodzicker T., Williams J., Sharp P., Sambrook J. Physical mapping of temperature-sensitive mutations of adenoviruses. Cold Spring Harb Symp Quant Biol. 1975;39(Pt 1):439–446. doi: 10.1101/sqb.1974.039.01.056. [DOI] [PubMed] [Google Scholar]
  16. HIRSCHFELD J. The Gc-system. Immuno-electrophoretic studies of normal human sera with special reference to a new genetically determined system (Gc). Prog Allergy. 1962;6:155–186. [PubMed] [Google Scholar]
  17. Harris H., Hopkinson D. A. Average heterozygosity per locus in man: an estimate based on the incidence of enzyme polymorphisms. Ann Hum Genet. 1972 Jul;36(1):9–20. doi: 10.1111/j.1469-1809.1972.tb00578.x. [DOI] [PubMed] [Google Scholar]
  18. Hopkinson D. A., Cook P. J., Harris H. Further data on the adenosine deaminase (ADA) polymprphism and a report of a new phenotype. Ann Hum Genet. 1969 May;32(4):361–367. doi: 10.1111/j.1469-1809.1969.tb00087.x. [DOI] [PubMed] [Google Scholar]
  19. Hopkinson D. A., Harris H. A third phosphoglucomutase locus in man. Ann Hum Genet. 1968 May;31(4):359–367. doi: 10.1111/j.1469-1809.1968.tb00567.x. [DOI] [PubMed] [Google Scholar]
  20. Hopkinson D. A., Harris H. Rare phosphoglucomutase phenotypes. Ann Hum Genet. 1966 Nov;30(2):167–181. doi: 10.1111/j.1469-1809.1966.tb00016.x. [DOI] [PubMed] [Google Scholar]
  21. Hopkinson D. A., Mestriner M. A., Cortner J., Harris H. Esterase D: a new human polymorphism. Ann Hum Genet. 1973 Oct;37(2):119–137. doi: 10.1111/j.1469-1809.1973.tb01820.x. [DOI] [PubMed] [Google Scholar]
  22. Hutchison C. A., 3rd, Newbold J. E., Potter S. S., Edgell M. H. Maternal inheritance of mammalian mitochondrial DNA. Nature. 1974 Oct 11;251(5475):536–538. doi: 10.1038/251536a0. [DOI] [PubMed] [Google Scholar]
  23. Jeffreys A. J. DNA sequence variants in the G gamma-, A gamma-, delta- and beta-globin genes of man. Cell. 1979 Sep;18(1):1–10. doi: 10.1016/0092-8674(79)90348-9. [DOI] [PubMed] [Google Scholar]
  24. Jeffreys A. J., Flavell R. A. A physical map of the DNA regions flanking the rabbit beta-globin gene. Cell. 1977 Oct;12(2):429–439. doi: 10.1016/0092-8674(77)90119-2. [DOI] [PubMed] [Google Scholar]
  25. Kan Y. W., Dozy A. M. Antenatal diagnosis of sickle-cell anaemia by D.N.A. analysis of amniotic-fluid cells. Lancet. 1978 Oct 28;2(8096):910–912. doi: 10.1016/s0140-6736(78)91629-x. [DOI] [PubMed] [Google Scholar]
  26. Kravitz K., Skolnick M., Cannings C., Carmelli D., Baty B., Amos B., Johnson A., Mendell N., Edwards C., Cartwright G. Genetic linkage between hereditary hemochromatosis and HLA. Am J Hum Genet. 1979 Sep;31(5):601–619. [PMC free article] [PubMed] [Google Scholar]
  27. Kömpf J., Bissbort S., Gussmann S., Ritter H. Polymorphism of red cell glyoxalase I (EI: 4.4.1.5); a new genetic marker in man. Investigation of 169 mother-child combinations. Humangenetik. 1975;27(2):141–143. doi: 10.1007/BF00273329. [DOI] [PubMed] [Google Scholar]
  28. Lewis W. H., Harris H. Human red cell peptidases. Nature. 1967 Jul 22;215(5099):351–355. doi: 10.1038/215351a0. [DOI] [PubMed] [Google Scholar]
  29. Maniatis T., Hardison R. C., Lacy E., Lauer J., O'Connell C., Quon D., Sim G. K., Efstratiadis A. The isolation of structural genes from libraries of eucaryotic DNA. Cell. 1978 Oct;15(2):687–701. doi: 10.1016/0092-8674(78)90036-3. [DOI] [PubMed] [Google Scholar]
  30. McKusick V. A., Ruddle F. H. The status of the gene map of the human chromosomes. Science. 1977 Apr 22;196(4288):390–405. doi: 10.1126/science.850784. [DOI] [PubMed] [Google Scholar]
  31. Merritt A. D., Rivas M. L., Bixler D., Newell R. Salivary and pancreatic amylase: electrophoretic characterizations and genetic studies. Am J Hum Genet. 1973 Sep;25(5):510–522. [PMC free article] [PubMed] [Google Scholar]
  32. Nathans D., Smith H. O. Restriction endonucleases in the analysis and restructuring of dna molecules. Annu Rev Biochem. 1975;44:273–293. doi: 10.1146/annurev.bi.44.070175.001421. [DOI] [PubMed] [Google Scholar]
  33. Olson M. V., Hall B. D., Cameron J. R., Davis R. W. Cloning of the yeast tyrosine transfer RNA genes in bacteriophage lambda. J Mol Biol. 1979 Jan 25;127(3):285–295. doi: 10.1016/0022-2836(79)90330-9. [DOI] [PubMed] [Google Scholar]
  34. Orkin S. H., Alter B. P., Altay C., Mahoney M. J., Lazarus H., Hobbins J. C., Nathan D. G. Application of endonuclease mapping to the analysis and prenatal diagnosis of thalassemias caused by globin-gene deletion. N Engl J Med. 1978 Jul 27;299(4):166–172. doi: 10.1056/NEJM197807272990403. [DOI] [PubMed] [Google Scholar]
  35. Petes T. D., Botstein D. Simple Mendelian inheritance of the reiterated ribosomal DNA of yeast. Proc Natl Acad Sci U S A. 1977 Nov;74(11):5091–5095. doi: 10.1073/pnas.74.11.5091. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Potter S. S., Newbold J. E., Hutchison C. A., 3rd, Edgell M. H. Specific cleavage analysis of mammalian mitochondrial DNA. Proc Natl Acad Sci U S A. 1975 Nov;72(11):4496–4500. doi: 10.1073/pnas.72.11.4496. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. RACE R. R., HOLT H. A., THOMPSON J. S. The inheritance and distribution of the Duffy blood groups. Heredity (Edinb) 1951 Apr;5(1):103–110. doi: 10.1038/hdy.1951.6. [DOI] [PubMed] [Google Scholar]
  38. Rapley S., Robson E. B., Harris H., Smith S. M. Data on the incidence, segregation and linkage relations of the adenylate kinase (AK) polymorphism. Ann Hum Genet. 1968 Jan;31(3):237–242. doi: 10.1111/j.1469-1809.1968.tb00554.x. [DOI] [PubMed] [Google Scholar]
  39. Renwick J. H. Progress in mapping human autosomes. Br Med Bull. 1969 Jan;25(1):65–73. doi: 10.1093/oxfordjournals.bmb.a070673. [DOI] [PubMed] [Google Scholar]
  40. Robson E. B., Harris H. Further studies on the genetics of placental alkaline phosphatase. Ann Hum Genet. 1967 Jan;30(3):219–232. doi: 10.1111/j.1469-1809.1967.tb00023.x. [DOI] [PubMed] [Google Scholar]
  41. Rosbash M., Campo M. S., Gummerson K. S. Conservation of cytoplasmic poly (A)-containing RNA in mouse and rat. Nature. 1975 Dec 25;258(5537):682–686. doi: 10.1038/258682a0. [DOI] [PubMed] [Google Scholar]
  42. Rubin G. M. Isolation of a telomeric DNA sequence from Drosophila melanogaster. Cold Spring Harb Symp Quant Biol. 1978;42(Pt 2):1041–1046. doi: 10.1101/sqb.1978.042.01.104. [DOI] [PubMed] [Google Scholar]
  43. Samloff I. M., Townes P. L. Pepsinogens: genetic polymorphism in man. Science. 1970 Apr 3;168(3927):144–145. doi: 10.1126/science.168.3927.144. [DOI] [PubMed] [Google Scholar]
  44. Schmid C. W., Deininger P. L. Sequence organization of the human genome. Cell. 1975 Nov;6(3):345–358. doi: 10.1016/0092-8674(75)90184-1. [DOI] [PubMed] [Google Scholar]
  45. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  46. Teisberg P. High voltage agarose gel electrophoresis in the study of C 3 polymorphism. Vox Sang. 1970 Jul;19(1):47–56. doi: 10.1111/j.1423-0410.1970.tb01494.x. [DOI] [PubMed] [Google Scholar]
  47. Teng Y. S., Anderson J. E., Giblett E. R. Cytidine deaminase: a new genetic polymorphism demonstrated in human granulocytes. Am J Hum Genet. 1975 Jul;27(4):492–497. [PMC free article] [PubMed] [Google Scholar]
  48. Tuan D., Biro P. A., deRiel J. K., Lazarus H., Forget B. G. Restriction endonuclease mapping of the human gamma globin gene loci. Nucleic Acids Res. 1979 Jun 11;6(7):2519–2544. doi: 10.1093/nar/6.7.2519. [DOI] [PMC free article] [PubMed] [Google Scholar]
  49. Upholt W. B. Estimation of DNA sequence divergence from comparison of restriction endonuclease digests. Nucleic Acids Res. 1977;4(5):1257–1265. doi: 10.1093/nar/4.5.1257. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Williams R. R., Skolnick M., Carmelli D., Maness A. T., Hunt S. C., Hasstedt S., Reiber G. E., Jones R. K. Utah pedigree studies: design and preliminary data for premature male CHD deaths. Prog Clin Biol Res. 1979;32:711–729. [PubMed] [Google Scholar]

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