Skip to main content
Proceedings of the Royal Society B: Biological Sciences logoLink to Proceedings of the Royal Society B: Biological Sciences
. 2000 May 22;267(1447):1049–1061. doi: 10.1098/rspb.2000.1109

The origin and age of haplochromine fishes in Lake Victoria, east Africa.

S Nagl 1, H Tichy 1, W E Mayer 1, N Takezaki 1, N Takahata 1, J Klein 1
PMCID: PMC1690633  PMID: 10874756

Abstract

According to a widely held view, the more than 300 species of haplochromine cichlid fishes in Lake Victoria (LV), East Africa, originated from a single founder species in less than 12,000 years. This view, however, does not follow from the published geological and molecular evidence. The former does indeed suggest that the LV basin dried out less than 15,000 years ago, but it does not provide any information about the species that re-colonized the new lake or that remained in the rivers draining the area. The molecular evidence is inconclusive with respect to the origin of the LV haplochromines because cichlids from critical regions around LV were not adequately sampled; and as far as the age of the LV haplochromines is concerned, it in fact led to an estimate of 250,000-750,000 years old. In the present study, mitochondrial DNA (control region) variation was determined by heteroduplex and sequencing analyses of more than 670 specimens collected at widely distributed East African riverine and lacustrine localities. The analyses revealed the existence of seven haplogroups (I-VII) distinguishable by characteristic substitutions. All endemic LV samples tested fell into one of these haplogroups (V) which, however, was also found to be present at various other localities, both riverine and lacustrine, outside LV. Within this haplogroup, four subgroups (VA through VD) could be distinguished, two of which (VB and VC) were represented in LV and at other localities. The great majority of the LV haplochromine species could be classified as belonging to the VC subgroup, which was found only in LV and in the rivers draining into it. Hence, while the endemic haplochromine species of LV could not have originated from a single founding population, the lake does harbour a large species flock which probably arose in situ.

Full Text

The Full Text of this article is available as a PDF (671.8 KB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Avise J. C., Johns G. C. Proposal for a standardized temporal scheme of biological classification for extant species. Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7358–7363. doi: 10.1073/pnas.96.13.7358. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Booton G. C., Kaufman L., Chandler M., Oguto-Ohwayo R., Duan W., Fuerst P. A. Evolution of the ribosomal RNA internal transcribed spacer one (ITS-1) in cichlid fishes of the Lake Victoria region. Mol Phylogenet Evol. 1999 Mar;11(2):273–282. doi: 10.1006/mpev.1998.0576. [DOI] [PubMed] [Google Scholar]
  3. Cantatore P., Roberti M., Pesole G., Ludovico A., Milella F., Gadaleta M. N., Saccone C. Evolutionary analysis of cytochrome b sequences in some Perciformes: evidence for a slower rate of evolution than in mammals. J Mol Evol. 1994 Dec;39(6):589–597. doi: 10.1007/BF00160404. [DOI] [PubMed] [Google Scholar]
  4. Donaldson K. A., Wilson R. R., Jr Amphi-panamic geminates of snook (Percoidei: Centropomidae) provide a calibration of the divergence rate in the mitochondrial DNA control region of fishes. Mol Phylogenet Evol. 1999 Oct;13(1):208–213. doi: 10.1006/mpev.1999.0625. [DOI] [PubMed] [Google Scholar]
  5. Horai S., Hayasaka K., Kondo R., Tsugane K., Takahata N. Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc Natl Acad Sci U S A. 1995 Jan 17;92(2):532–536. doi: 10.1073/pnas.92.2.532. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Jin L., Nei M. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol Biol Evol. 1990 Jan;7(1):82–102. doi: 10.1093/oxfordjournals.molbev.a040588. [DOI] [PubMed] [Google Scholar]
  7. Johnson TC, Scholz CA, Talbot MR, Kelts K, Ricketts RD, Ngobi G, Beuning K, Ssemmanda I, I, McGill JW. Late Pleistocene Desiccation of Lake Victoria and Rapid Evolution of Cichlid Fishes. Science. 1996 Aug 23;273(5278):1091–1093. doi: 10.1126/science.273.5278.1091. [DOI] [PubMed] [Google Scholar]
  8. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 1980 Dec;16(2):111–120. doi: 10.1007/BF01731581. [DOI] [PubMed] [Google Scholar]
  9. Kocher T. D., Conroy J. A., McKaye K. R., Stauffer J. R. Similar morphologies of cichlid fish in Lakes Tanganyika and Malawi are due to convergence. Mol Phylogenet Evol. 1993 Jun;2(2):158–165. doi: 10.1006/mpev.1993.1016. [DOI] [PubMed] [Google Scholar]
  10. Lee W. J., Conroy J., Howell W. H., Kocher T. D. Structure and evolution of teleost mitochondrial control regions. J Mol Evol. 1995 Jul;41(1):54–66. doi: 10.1007/BF00174041. [DOI] [PubMed] [Google Scholar]
  11. Martin A. P., Naylor G. J., Palumbi S. R. Rates of mitochondrial DNA evolution in sharks are slow compared with mammals. Nature. 1992 May 14;357(6374):153–155. doi: 10.1038/357153a0. [DOI] [PubMed] [Google Scholar]
  12. Mayer W. E., Tichy H., Klein J. Phylogeny of African cichlid fishes as revealed by molecular markers. Heredity (Edinb) 1998 Jun;80(Pt 6):702–714. doi: 10.1046/j.1365-2540.1998.00347.x. [DOI] [PubMed] [Google Scholar]
  13. Meyer A., Kocher T. D., Basasibwaki P., Wilson A. C. Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature. 1990 Oct 11;347(6293):550–553. doi: 10.1038/347550a0. [DOI] [PubMed] [Google Scholar]
  14. doi: 10.1098/rspb.1999.0691. [DOI] [PMC free article] [Google Scholar]
  15. Rüber L., Verheyen E., Meyer A. Replicated evolution of trophic specializations in an endemic cichlid fish lineage from Lake Tanganyika. Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10230–10235. doi: 10.1073/pnas.96.18.10230. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987 Jul;4(4):406–425. doi: 10.1093/oxfordjournals.molbev.a040454. [DOI] [PubMed] [Google Scholar]
  17. Sturmbauer C., Meyer A. Mitochondrial phylogeny of the endemic mouthbrooding lineages of cichlid fishes from Lake Tanganyika in eastern Africa. Mol Biol Evol. 1993 Jul;10(4):751–768. doi: 10.1093/oxfordjournals.molbev.a040042. [DOI] [PubMed] [Google Scholar]
  18. Takezaki N., Rzhetsky A., Nei M. Phylogenetic test of the molecular clock and linearized trees. Mol Biol Evol. 1995 Sep;12(5):823–833. doi: 10.1093/oxfordjournals.molbev.a040259. [DOI] [PubMed] [Google Scholar]
  19. Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994 Nov 11;22(22):4673–4680. doi: 10.1093/nar/22.22.4673. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Yang Z. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol. 1994 Sep;39(3):306–314. doi: 10.1007/BF00160154. [DOI] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Supplementary data file
10874756s01.pdf (53.3KB, pdf)

Articles from Proceedings of the Royal Society B: Biological Sciences are provided here courtesy of The Royal Society

RESOURCES