Skip to main content
Philosophical Transactions of the Royal Society B: Biological Sciences logoLink to Philosophical Transactions of the Royal Society B: Biological Sciences
. 2004 Jan 29;359(1441):7–16. doi: 10.1098/rstb.2003.1360

Dynamics of pre-replication complex proteins during the cell division cycle.

Supriya G Prasanth 1, Juan Méndez 1, Kannanganattu V Prasanth 1, Bruce Stillman 1
PMCID: PMC1693299  PMID: 15065651

Abstract

Replication of the human genome every time a cell divides is a highly coordinated process that ensures accurate and efficient inheritance of the genetic information. The molecular mechanism that guarantees that many origins of replication fire only once per cell-cycle has been the area of intense research. The origin recognition complex (ORC) marks the position of replication origins in the genome and serves as the landing pad for the assembly of a multiprotein, pre-replicative complex (pre-RC) at the origins, consisting of ORC, cell division cycle 6 (Cdc6), Cdc10-dependent transcript (Cdt1) and mini-chromosome maintenance (MCM) proteins. The MCM proteins serve as key participants in the mechanism that limits eukaryotic DNA replication to once-per-cell-cycle and its binding to the chromatin marks the final step of pre-RC formation, a process referred to as 'replication licensing'. We present data demonstrating how the MCM proteins associate with the chromatin during the G1 phase, probably defining pre-RCs and then anticipate replication fork movement in a precisely coordinated manner during the S phase of the cell cycle. The process of DNA replication must also be carefully coordinated with other cell-cycle processes including mitosis and cytokinesis. Some of the proteins that control initiation of DNA replication are likely to interact with the pathways that control these important cell-cycle transitions. Herein, we discuss the participation of human ORC proteins in other vital functions, in addition to their bona fide roles in replication.

Full Text

The Full Text of this article is available as a PDF (1.6 MB).

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bell S. P., Stillman B. ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature. 1992 May 14;357(6374):128–134. doi: 10.1038/357128a0. [DOI] [PubMed] [Google Scholar]
  2. Bell Stephen P., Dutta Anindya. DNA replication in eukaryotic cells. Annu Rev Biochem. 2001 Nov 9;71:333–374. doi: 10.1146/annurev.biochem.71.110601.135425. [DOI] [PubMed] [Google Scholar]
  3. Bell Stephen P. The origin recognition complex: from simple origins to complex functions. Genes Dev. 2002 Mar 15;16(6):659–672. doi: 10.1101/gad.969602. [DOI] [PubMed] [Google Scholar]
  4. Blow J. Julian, Hodgson Ben. Replication licensing--defining the proliferative state? Trends Cell Biol. 2002 Feb;12(2):72–78. doi: 10.1016/s0962-8924(01)02203-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Bravo R., Macdonald-Bravo H. Existence of two populations of cyclin/proliferating cell nuclear antigen during the cell cycle: association with DNA replication sites. J Cell Biol. 1987 Oct;105(4):1549–1554. doi: 10.1083/jcb.105.4.1549. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Caruthers Jonathan M., McKay David B. Helicase structure and mechanism. Curr Opin Struct Biol. 2002 Feb;12(1):123–133. doi: 10.1016/s0959-440x(02)00298-1. [DOI] [PubMed] [Google Scholar]
  7. Chong J. P., Hayashi M. K., Simon M. N., Xu R. M., Stillman B. A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase. Proc Natl Acad Sci U S A. 2000 Feb 15;97(4):1530–1535. doi: 10.1073/pnas.030539597. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Christensen Tim W., Tye Bik K. Drosophila MCM10 interacts with members of the prereplication complex and is required for proper chromosome condensation. Mol Biol Cell. 2003 Mar 7;14(6):2206–2215. doi: 10.1091/mbc.E02-11-0706. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Claycomb Julie M., MacAlpine David M., Evans James G., Bell Stephen P., Orr-Weaver Terry L. Visualization of replication initiation and elongation in Drosophila. J Cell Biol. 2002 Oct 28;159(2):225–236. doi: 10.1083/jcb.200207046. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Coverley D., Pelizon C., Trewick S., Laskey R. A. Chromatin-bound Cdc6 persists in S and G2 phases in human cells, while soluble Cdc6 is destroyed in a cyclin A-cdk2 dependent process. J Cell Sci. 2000 Jun;113(Pt 11):1929–1938. doi: 10.1242/jcs.113.11.1929. [DOI] [PubMed] [Google Scholar]
  11. DePamphilis M. L. Replication origins in metazoan chromosomes: fact or fiction? Bioessays. 1999 Jan;21(1):5–16. doi: 10.1002/(SICI)1521-1878(199901)21:1<5::AID-BIES2>3.0.CO;2-6. [DOI] [PubMed] [Google Scholar]
  12. Dhar S. K., Yoshida K., Machida Y., Khaira P., Chaudhuri B., Wohlschlegel J. A., Leffak M., Yates J., Dutta A. Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin. Cell. 2001 Aug 10;106(3):287–296. doi: 10.1016/s0092-8674(01)00458-5. [DOI] [PubMed] [Google Scholar]
  13. Diffley J. F., Cocker J. H., Dowell S. J., Rowley A. Two steps in the assembly of complexes at yeast replication origins in vivo. Cell. 1994 Jul 29;78(2):303–316. doi: 10.1016/0092-8674(94)90299-2. [DOI] [PubMed] [Google Scholar]
  14. Diffley J. F. Once and only once upon a time: specifying and regulating origins of DNA replication in eukaryotic cells. Genes Dev. 1996 Nov 15;10(22):2819–2830. doi: 10.1101/gad.10.22.2819. [DOI] [PubMed] [Google Scholar]
  15. Dimitrova D. S., Todorov I. T., Melendy T., Gilbert D. M. Mcm2, but not RPA, is a component of the mammalian early G1-phase prereplication complex. J Cell Biol. 1999 Aug 23;146(4):709–722. doi: 10.1083/jcb.146.4.709. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Dimitrova Daniela S., Prokhorova Tatyana A., Blow J. Julian, Todorov Ivan T., Gilbert David M. Mammalian nuclei become licensed for DNA replication during late telophase. J Cell Sci. 2002 Jan 1;115(Pt 1):51–59. doi: 10.1242/jcs.115.1.51. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Donovan S., Harwood J., Drury L. S., Diffley J. F. Cdc6p-dependent loading of Mcm proteins onto pre-replicative chromatin in budding yeast. Proc Natl Acad Sci U S A. 1997 May 27;94(11):5611–5616. doi: 10.1073/pnas.94.11.5611. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Fletcher Ryan J., Bishop Brooke E., Leon Ronald P., Sclafani Robert A., Ogata Craig M., Chen Xiaojiang S. The structure and function of MCM from archaeal M. Thermoautotrophicum. Nat Struct Biol. 2003 Mar;10(3):160–167. doi: 10.1038/nsb893. [DOI] [PubMed] [Google Scholar]
  19. Fujita M., Kiyono T., Hayashi Y., Ishibashi M. hCDC47, a human member of the MCM family. Dissociation of the nucleus-bound form during S phase. J Biol Chem. 1996 Feb 23;271(8):4349–4354. doi: 10.1074/jbc.271.8.4349. [DOI] [PubMed] [Google Scholar]
  20. Gerbi Susan A., Bielinsky Anja Katrin. DNA replication and chromatin. Curr Opin Genet Dev. 2002 Apr;12(2):243–248. doi: 10.1016/s0959-437x(02)00292-7. [DOI] [PubMed] [Google Scholar]
  21. Henneke Ghislaine, Koundrioukoff Stéphane, Hübscher Ulrich. Multiple roles for kinases in DNA replication. EMBO Rep. 2003 Mar;4(3):252–256. doi: 10.1038/sj.embor.embor774. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Hodgson Ben, Li Anatoliy, Tada Shusuke, Blow J. Julian. Geminin becomes activated as an inhibitor of Cdt1/RLF-B following nuclear import. Curr Biol. 2002 Apr 16;12(8):678–683. doi: 10.1016/s0960-9822(02)00778-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Holland Linda, Gauthier Laura, Bell-Rogers Patricia, Yankulov Krassimir. Distinct parts of minichromosome maintenance protein 2 associate with histone H3/H4 and RNA polymerase II holoenzyme. Eur J Biochem. 2002 Nov;269(21):5192–5202. doi: 10.1046/j.1432-1033.2002.03224.x. [DOI] [PubMed] [Google Scholar]
  24. Holthoff H. P., Baack M., Richter A., Ritzi M., Knippers R. Human protein MCM6 on HeLa cell chromatin. J Biol Chem. 1998 Mar 27;273(13):7320–7325. doi: 10.1074/jbc.273.13.7320. [DOI] [PubMed] [Google Scholar]
  25. Kearsey S. E., Labib K. MCM proteins: evolution, properties, and role in DNA replication. Biochim Biophys Acta. 1998 Jun 16;1398(2):113–136. doi: 10.1016/s0167-4781(98)00033-5. [DOI] [PubMed] [Google Scholar]
  26. Kelly T. J., Brown G. W. Regulation of chromosome replication. Annu Rev Biochem. 2000;69:829–880. doi: 10.1146/annurev.biochem.69.1.829. [DOI] [PubMed] [Google Scholar]
  27. Kreitz S., Ritzi M., Baack M., Knippers R. The human origin recognition complex protein 1 dissociates from chromatin during S phase in HeLa cells. J Biol Chem. 2000 Dec 1;276(9):6337–6342. doi: 10.1074/jbc.M009473200. [DOI] [PubMed] [Google Scholar]
  28. Krude T., Musahl C., Laskey R. A., Knippers R. Human replication proteins hCdc21, hCdc46 and P1Mcm3 bind chromatin uniformly before S-phase and are displaced locally during DNA replication. J Cell Sci. 1996 Feb;109(Pt 2):309–318. doi: 10.1242/jcs.109.2.309. [DOI] [PubMed] [Google Scholar]
  29. Labib K., Tercero J. A., Diffley J. F. Uninterrupted MCM2-7 function required for DNA replication fork progression. Science. 2000 Jun 2;288(5471):1643–1647. doi: 10.1126/science.288.5471.1643. [DOI] [PubMed] [Google Scholar]
  30. Laskey Ronald A., Madine Mark A. A rotary pumping model for helicase function of MCM proteins at a distance from replication forks. EMBO Rep. 2003 Jan;4(1):26–30. doi: 10.1038/sj.embor.embor706. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Li Cong-Jun, DePamphilis Melvin L. Mammalian Orc1 protein is selectively released from chromatin and ubiquitinated during the S-to-M transition in the cell division cycle. Mol Cell Biol. 2002 Jan;22(1):105–116. doi: 10.1128/MCB.22.1.105-116.2002. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Liang C., Stillman B. Persistent initiation of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants. Genes Dev. 1997 Dec 15;11(24):3375–3386. doi: 10.1101/gad.11.24.3375. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Loupart M. L., Krause S. A., Heck M. S. Aberrant replication timing induces defective chromosome condensation in Drosophila ORC2 mutants. Curr Biol. 2000 Dec 14;10(24):1547–1556. doi: 10.1016/s0960-9822(00)00844-7. [DOI] [PubMed] [Google Scholar]
  34. Madine M. A., Khoo C. Y., Mills A. D., Musahl C., Laskey R. A. The nuclear envelope prevents reinitiation of replication by regulating the binding of MCM3 to chromatin in Xenopus egg extracts. Curr Biol. 1995 Nov 1;5(11):1270–1279. doi: 10.1016/s0960-9822(95)00253-3. [DOI] [PubMed] [Google Scholar]
  35. Madine M. A., Swietlik M., Pelizon C., Romanowski P., Mills A. D., Laskey R. A. The roles of the MCM, ORC, and Cdc6 proteins in determining the replication competence of chromatin in quiescent cells. J Struct Biol. 2000 Apr;129(2-3):198–210. doi: 10.1006/jsbi.2000.4218. [DOI] [PubMed] [Google Scholar]
  36. Martini E., Roche D. M., Marheineke K., Verreault A., Almouzni G. Recruitment of phosphorylated chromatin assembly factor 1 to chromatin after UV irradiation of human cells. J Cell Biol. 1998 Nov 2;143(3):563–575. doi: 10.1083/jcb.143.3.563. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. McGarry T. J., Kirschner M. W. Geminin, an inhibitor of DNA replication, is degraded during mitosis. Cell. 1998 Jun 12;93(6):1043–1053. doi: 10.1016/s0092-8674(00)81209-x. [DOI] [PubMed] [Google Scholar]
  38. Méndez J., Stillman B. Chromatin association of human origin recognition complex, cdc6, and minichromosome maintenance proteins during the cell cycle: assembly of prereplication complexes in late mitosis. Mol Cell Biol. 2000 Nov;20(22):8602–8612. doi: 10.1128/mcb.20.22.8602-8612.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Méndez Juan, Zou-Yang X. Helena, Kim So-Young, Hidaka Masumi, Tansey William P., Stillman Bruce. Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication. Mol Cell. 2002 Mar;9(3):481–491. doi: 10.1016/s1097-2765(02)00467-7. [DOI] [PubMed] [Google Scholar]
  40. Natale D. A., Li C. J., Sun W. H., DePamphilis M. L. Selective instability of Orc1 protein accounts for the absence of functional origin recognition complexes during the M-G(1) transition in mammals. EMBO J. 2000 Jun 1;19(11):2728–2738. doi: 10.1093/emboj/19.11.2728. [DOI] [PMC free article] [PubMed] [Google Scholar]
  41. Noton E., Diffley J. F. CDK inactivation is the only essential function of the APC/C and the mitotic exit network proteins for origin resetting during mitosis. Mol Cell. 2000 Jan;5(1):85–95. doi: 10.1016/s1097-2765(00)80405-0. [DOI] [PubMed] [Google Scholar]
  42. O'Keefe R. T., Henderson S. C., Spector D. L. Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences. J Cell Biol. 1992 Mar;116(5):1095–1110. doi: 10.1083/jcb.116.5.1095. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Pak D. T., Pflumm M., Chesnokov I., Huang D. W., Kellum R., Marr J., Romanowski P., Botchan M. R. Association of the origin recognition complex with heterochromatin and HP1 in higher eukaryotes. Cell. 1997 Oct 31;91(3):311–323. doi: 10.1016/s0092-8674(00)80415-8. [DOI] [PubMed] [Google Scholar]
  44. Pflumm M. F., Botchan M. R. Orc mutants arrest in metaphase with abnormally condensed chromosomes. Development. 2001 May;128(9):1697–1707. doi: 10.1242/dev.128.9.1697. [DOI] [PubMed] [Google Scholar]
  45. Pflumm Michelle F. The role of DNA replication in chromosome condensation. Bioessays. 2002 May;24(5):411–418. doi: 10.1002/bies.10092. [DOI] [PubMed] [Google Scholar]
  46. Piatti S., Böhm T., Cocker J. H., Diffley J. F., Nasmyth K. Activation of S-phase-promoting CDKs in late G1 defines a "point of no return" after which Cdc6 synthesis cannot promote DNA replication in yeast. Genes Dev. 1996 Jun 15;10(12):1516–1531. doi: 10.1101/gad.10.12.1516. [DOI] [PubMed] [Google Scholar]
  47. Prasanth Supriya G., Prasanth Kannanganattu V., Stillman Bruce. Orc6 involved in DNA replication, chromosome segregation, and cytokinesis. Science. 2002 Aug 9;297(5583):1026–1031. doi: 10.1126/science.1072802. [DOI] [PubMed] [Google Scholar]
  48. Rowles A., Blow J. J. Chromatin proteins involved in the initiation of DNA replication. Curr Opin Genet Dev. 1997 Apr;7(2):152–157. doi: 10.1016/s0959-437x(97)80123-2. [DOI] [PubMed] [Google Scholar]
  49. Sharples G. J., Ingleston S. M., Lloyd R. G. Holliday junction processing in bacteria: insights from the evolutionary conservation of RuvABC, RecG, and RusA. J Bacteriol. 1999 Sep;181(18):5543–5550. doi: 10.1128/jb.181.18.5543-5550.1999. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Sherratt David J., Søballe Britta, Barre François-Xavier, Filipe Sergio, Lau Ivy, Massey Thomas, Yates James. Recombination and chromosome segregation. Philos Trans R Soc Lond B Biol Sci. 2004 Jan 29;359(1441):61–69. doi: 10.1098/rstb.2003.1365. [DOI] [PMC free article] [PubMed] [Google Scholar]
  51. Smith S., Stillman B. Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell. 1989 Jul 14;58(1):15–25. doi: 10.1016/0092-8674(89)90398-x. [DOI] [PubMed] [Google Scholar]
  52. Smith S., Stillman B. Stepwise assembly of chromatin during DNA replication in vitro. EMBO J. 1991 Apr;10(4):971–980. doi: 10.1002/j.1460-2075.1991.tb08031.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. Stillman B. Cell cycle control of DNA replication. Science. 1996 Dec 6;274(5293):1659–1664. doi: 10.1126/science.274.5293.1659. [DOI] [PubMed] [Google Scholar]
  54. Tada S., Li A., Maiorano D., Méchali M., Blow J. J. Repression of origin assembly in metaphase depends on inhibition of RLF-B/Cdt1 by geminin. Nat Cell Biol. 2001 Feb;3(2):107–113. doi: 10.1038/35055000. [DOI] [PMC free article] [PubMed] [Google Scholar]
  55. Tanaka T., Knapp D., Nasmyth K. Loading of an Mcm protein onto DNA replication origins is regulated by Cdc6p and CDKs. Cell. 1997 Aug 22;90(4):649–660. doi: 10.1016/s0092-8674(00)80526-7. [DOI] [PubMed] [Google Scholar]
  56. Todorov I. T., Attaran A., Kearsey S. E. BM28, a human member of the MCM2-3-5 family, is displaced from chromatin during DNA replication. J Cell Biol. 1995 Jun;129(6):1433–1445. doi: 10.1083/jcb.129.6.1433. [DOI] [PMC free article] [PubMed] [Google Scholar]
  57. Tye B. K. MCM proteins in DNA replication. Annu Rev Biochem. 1999;68:649–686. doi: 10.1146/annurev.biochem.68.1.649. [DOI] [PubMed] [Google Scholar]
  58. Verreault Alain. Histone deposition at the replication fork: a matter of urgency. Mol Cell. 2003 Feb;11(2):283–284. doi: 10.1016/s1097-2765(03)00052-2. [DOI] [PubMed] [Google Scholar]
  59. Waga S., Stillman B. The DNA replication fork in eukaryotic cells. Annu Rev Biochem. 1998;67:721–751. doi: 10.1146/annurev.biochem.67.1.721. [DOI] [PubMed] [Google Scholar]
  60. Wohlschlegel J. A., Dwyer B. T., Dhar S. K., Cvetic C., Walter J. C., Dutta A. Inhibition of eukaryotic DNA replication by geminin binding to Cdt1. Science. 2000 Dec 22;290(5500):2309–2312. doi: 10.1126/science.290.5500.2309. [DOI] [PubMed] [Google Scholar]
  61. Zhou B. B., Elledge S. J. The DNA damage response: putting checkpoints in perspective. Nature. 2000 Nov 23;408(6811):433–439. doi: 10.1038/35044005. [DOI] [PubMed] [Google Scholar]

Articles from Philosophical Transactions of the Royal Society B: Biological Sciences are provided here courtesy of The Royal Society

RESOURCES