Abstract
Van der Woude syndrome (VWS) is an autosomal dominant craniofacial disorder characterized by lip pits, clefting of the primary or secondary palate, and hypodontia. The gene has been localized, by RFLP-based linkage studies, to region 1q32-41 between D1S65-REN and D1S65-TGFB2. In this study we report the linkage analysis of 15 VWS families, using 18 microsatellite markers. Multipoint linkage analysis places the gene, with significant odds of 2,344:1, in a 4.1-cM interval flanked by D1S245 and D1S414. Two-point linkage analysis demonstrates close linkage of VWS with D1S205 (lod score [Z] = 24.41 at theta = .00) and with D1S491 (Z = 21.23 at theta = .00). The results revise the previous assignment of the VWS locus and show in an integrated map of the region 1q32-42 that the VWS gene resides more distally than previously suggested. When information about heterozygosity of the closely linked marker D1S491 in the affected members of the VWS family with a microdeletion is taken into account, the VWS critical region can be further narrowed, to the 3.6-cM interval between D1S491 and D1S414.
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- Buetow K. H. Influence of aberrant observations on high-resolution linkage analysis outcomes. Am J Hum Genet. 1991 Nov;49(5):985–994. [PMC free article] [PubMed] [Google Scholar]
- Buetow K. H., Nishimura D., Nakamura Y., Jiang O., Murray J. C. A detailed multipoint gene map of chromosome 1q. Genomics. 1990 Sep;8(1):13–21. doi: 10.1016/0888-7543(90)90220-o. [DOI] [PubMed] [Google Scholar]
- Buetow K. H., Weber J. L., Ludwigsen S., Scherpbier-Heddema T., Duyk G. M., Sheffield V. C., Wang Z., Murray J. C. Integrated human genome-wide maps constructed using the CEPH reference panel. Nat Genet. 1994 Apr;6(4):391–393. doi: 10.1038/ng0494-391. [DOI] [PubMed] [Google Scholar]
- Burdick A. B., Bixler D., Puckett C. L. Genetic analysis in families with van der Woude syndrome. J Craniofac Genet Dev Biol. 1985;5(2):181–208. [PubMed] [Google Scholar]
- Burdick A. B., Ma L. A., Dai Z. H., Gao N. N. van der Woude syndrome in two families in China. J Craniofac Genet Dev Biol. 1987;7(4):413–418. [PubMed] [Google Scholar]
- Cohen D., Chumakov I., Weissenbach J. A first-generation physical map of the human genome. Nature. 1993 Dec 16;366(6456):698–701. doi: 10.1038/366698a0. [DOI] [PubMed] [Google Scholar]
- Cottingham R. W., Jr, Idury R. M., Schäffer A. A. Faster sequential genetic linkage computations. Am J Hum Genet. 1993 Jul;53(1):252–263. [PMC free article] [PubMed] [Google Scholar]
- Dracopoli N. C., O'Connell P., Elsner T. I., Lalouel J. M., White R. L., Buetow K. H., Nishimura D. Y., Murray J. C., Helms C., Mishra S. K. The CEPH consortium linkage map of human chromosome 1. Genomics. 1991 Apr;9(4):686–700. doi: 10.1016/0888-7543(91)90362-i. [DOI] [PubMed] [Google Scholar]
- Edwards A., Civitello A., Hammond H. A., Caskey C. T. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet. 1991 Oct;49(4):746–756. [PMC free article] [PubMed] [Google Scholar]
- Engelstein M., Hudson T. J., Lane J. M., Lee M. K., Leverone B., Landes G. M., Peltonen L., Weber J. L., Dracopoli N. C. A PCR-based linkage map of human chromosome 1. Genomics. 1993 Feb;15(2):251–258. doi: 10.1006/geno.1993.1054. [DOI] [PubMed] [Google Scholar]
- Gregg R. G., Couch F., Hogan K., Powers P. A. Assignment of the human gene for the alpha 1 subunit of the skeletal muscle DHP-sensitive Ca2+ channel (CACNL1A3) to chromosome 1q31-q32. Genomics. 1993 Jan;15(1):107–112. doi: 10.1006/geno.1993.1017. [DOI] [PubMed] [Google Scholar]
- Gyapay G., Morissette J., Vignal A., Dib C., Fizames C., Millasseau P., Marc S., Bernardi G., Lathrop M., Weissenbach J. The 1993-94 Généthon human genetic linkage map. Nat Genet. 1994 Jun;7(2 Spec No):246–339. doi: 10.1038/ng0694supp-246. [DOI] [PubMed] [Google Scholar]
- Hecht J. T., Wang Y., Blanton S. H., Daiger S. P. Van der Woude syndrome and nonsyndromic cleft lip and palate. Am J Hum Genet. 1992 Aug;51(2):442–444. [PMC free article] [PubMed] [Google Scholar]
- Kenwrick S., Leversha M., Rooke L., Hasler T., Sonderegger P. Localization of the human TAX-1 gene to 1q32.1: a region implicated in microcephaly and Van der Woude syndrome. Hum Mol Genet. 1993 Sep;2(9):1461–1462. doi: 10.1093/hmg/2.9.1461. [DOI] [PubMed] [Google Scholar]
- Kotelevtsev YuV, Clauser E., Corvol P., Soubrier F. Dinucleotide repeat polymorphism in the human angiotensinogen gene. Nucleic Acids Res. 1991 Dec 25;19(24):6978–6978. doi: 10.1093/nar/19.24.6978. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lander E. S., Green P. Construction of multilocus genetic linkage maps in humans. Proc Natl Acad Sci U S A. 1987 Apr;84(8):2363–2367. doi: 10.1073/pnas.84.8.2363. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lathrop G. M., Lalouel J. M., Julier C., Ott J. Strategies for multilocus linkage analysis in humans. Proc Natl Acad Sci U S A. 1984 Jun;81(11):3443–3446. doi: 10.1073/pnas.81.11.3443. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Miller S. A., Dykes D. D., Polesky H. F. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 1988 Feb 11;16(3):1215–1215. doi: 10.1093/nar/16.3.1215. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murray J. C., Nishimura D. Y., Buetow K. H., Ardinger H. H., Spence M. A., Sparkes R. S., Falk R. E., Falk P. M., Gardner R. J., Harkness E. M. Linkage of an autosomal dominant clefting syndrome (Van der Woude) to loci on chromosome Iq. Am J Hum Genet. 1990 Mar;46(3):486–491. [PMC free article] [PubMed] [Google Scholar]
- Nishimura D. Y., Leysens N. J., Murray J. C. A dinucleotide repeat for the D1S53 locus. Nucleic Acids Res. 1992 Mar 11;20(5):1167–1167. [PMC free article] [PubMed] [Google Scholar]
- Nishimura D. Y., Murray J. C. A tetranucleotide repeat for the F13B locus. Nucleic Acids Res. 1992 Mar 11;20(5):1167–1167. [PMC free article] [PubMed] [Google Scholar]
- Nishimura D. Y., Purchio A. F., Murray J. C. Linkage localization of TGFB2 and the human homeobox gene HLX1 to chromosome 1q. Genomics. 1993 Feb;15(2):357–364. doi: 10.1006/geno.1993.1068. [DOI] [PubMed] [Google Scholar]
- Olson M., Hood L., Cantor C., Botstein D. A common language for physical mapping of the human genome. Science. 1989 Sep 29;245(4925):1434–1435. doi: 10.1126/science.2781285. [DOI] [PubMed] [Google Scholar]
- Ott J. A simple scheme for the analysis of HLA linkages in pedigrees. Ann Hum Genet. 1978 Oct;42(2):255–257. doi: 10.1111/j.1469-1809.1978.tb00657.x. [DOI] [PubMed] [Google Scholar]
- Poncz M., Solowiejczyk D., Harpel B., Mory Y., Schwartz E., Surrey S. Construction of human gene libraries from small amounts of peripheral blood: analysis of beta-like globin genes. Hemoglobin. 1982;6(1):27–36. doi: 10.3109/03630268208996930. [DOI] [PubMed] [Google Scholar]
- Rey-Campos J., Rubinstein P., Rodriguez de Cordoba S. A physical map of the human regulator of complement activation gene cluster linking the complement genes CR1, CR2, DAF, and C4BP. J Exp Med. 1988 Feb 1;167(2):664–669. doi: 10.1084/jem.167.2.664. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rintala A. E., Ranta R. Lower lip sinuses: I. Epidemiology, microforms and transverse sulci. Br J Plast Surg. 1981 Jan;34(1):26–30. doi: 10.1016/0007-1226(81)90090-4. [DOI] [PubMed] [Google Scholar]
- Sander A., Kennedy M. A., Rayner J. C., Murray J. C. Dinucleotide repeat polymorphism for HLX1 gene. Hum Mol Genet. 1994 Jan;3(1):219–219. doi: 10.1093/hmg/3.1.219-a. [DOI] [PubMed] [Google Scholar]
- Sander A., Moser H., Liechti-Gallati S., Grimm T., Zingg M., Raveh J. Linkage of Van der Woude syndrome (VWS) to REN and exclusion of the candidate gene TGFB2 from the disease locus in a large pedigree. Hum Genet. 1993 Mar;91(1):55–62. doi: 10.1007/BF00230223. [DOI] [PubMed] [Google Scholar]
- Sander A., Schmelzle R., Murray J. Evidence for a microdeletion in 1q32-41 involving the gene responsible for Van der Woude syndrome. Hum Mol Genet. 1994 Apr;3(4):575–578. doi: 10.1093/hmg/3.4.575. [DOI] [PubMed] [Google Scholar]
- Srivastava S., Bang R. L. Congenital sinuses of the lower lip: reappraisal of Van der Woude syndrome on the basis of nine patients. Ann Plast Surg. 1989 Apr;22(4):316–320. doi: 10.1097/00000637-198904000-00006. [DOI] [PubMed] [Google Scholar]
- Velasco E., Sanchez-Corral P., Moreno F., Rodriguez de Cordoba S. Dinucleotide repeat polymorphism between the human C4BPA and C4BPB gene loci (1q32). Hum Mol Genet. 1992 Oct;1(7):552–552. doi: 10.1093/hmg/1.7.552-a. [DOI] [PubMed] [Google Scholar]
- Vintiner G. M., Lo K. K., Holder S. E., Winter R. M., Malcolm S. Exclusion of candidate genes from a role in cleft lip with or without cleft palate: linkage and association studies. J Med Genet. 1993 Sep;30(9):773–778. doi: 10.1136/jmg.30.9.773. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Weissenbach J., Gyapay G., Dib C., Vignal A., Morissette J., Millasseau P., Vaysseix G., Lathrop M. A second-generation linkage map of the human genome. Nature. 1992 Oct 29;359(6398):794–801. doi: 10.1038/359794a0. [DOI] [PubMed] [Google Scholar]