Skip to main content
Applied and Environmental Microbiology logoLink to Applied and Environmental Microbiology
. 1988 Oct;54(10):2500–2503. doi: 10.1128/aem.54.10.2500-2503.1988

Identification of Frankia Strains by Direct DNA Hybridization of Crushed Nodules

Pascal Simonet 1,*, Nguyen Thi Le 1,, Eric Teissier Du Cros 1, Rene Bardin 1
PMCID: PMC204296  PMID: 16347757

Abstract

A hybridization procedure was developed to identify Frankia strains inside actinorhizae by direct probing of crushed root nodules. The probe consisted of an indigenous cryptic plasmid. This well-conserved, 8-kilobase plasmid was detected in Frankia isolates that were very close taxonomically (they possessed a very high DNA sequence homology). The probe did not hybridize to the DNA of Frankia isolates which did not carry the plasmid. Endophyte DNA was extracted by a modification of a technique originally developed for the detection of plasmids in Frankia isolates. The hybridization procedure applied to nodules collected in a stand of alder permitted determination of a distribution map of the plasmid-bearing Frankia strains.

Full text

PDF
2503

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Cooper J. E., Bjourson A. J., Thompson J. K. Identification of lotus rhizobia by direct DNA hybridization of crushed root nodules. Appl Environ Microbiol. 1987 Jul;53(7):1705–1707. doi: 10.1128/aem.53.7.1705-1707.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Rigby P. W., Dieckmann M., Rhodes C., Berg P. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol. 1977 Jun 15;113(1):237–251. doi: 10.1016/0022-2836(77)90052-3. [DOI] [PubMed] [Google Scholar]
  3. Schmidt E. L., Bakole R. O., Bohlool B. B. Fluorescent-antibody approach to study of rhizobia in soil. J Bacteriol. 1968 Jun;95(6):1987–1992. doi: 10.1128/jb.95.6.1987-1992.1968. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Applied and Environmental Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES