Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1993 Dec;175(24):7863–7868. doi: 10.1128/jb.175.24.7863-7868.1993

The ancestry of insertion sequences common to Escherichia coli and Salmonella typhimurium.

M Bisercić 1, H Ochman 1
PMCID: PMC206963  PMID: 8253675

Abstract

Despite very restricted gene exchange between Escherichia coli and Salmonella typhimurium, both species harbor several of the same classes of insertion sequences. To determine whether the present-day distribution of these transposable elements is due to common ancestry or to horizontal transfer, we determined the sequences of IS1 and IS200 from natural isolates of S. typhimurium and E. coli. One strain of S. typhimurium harbored an IS1 element identical to that originally recovered from E. coli, suggesting that the element was recently transferred between these two species. The level of sequence divergence between copies of IS200 from E. coli and S. typhimurium ranged from 9.5 to 10.7%, indicating that IS200, unlike IS1, has not been repeatedly transferred between these enteric species since E. coli and S. typhimurium diverged from a common ancestor. Levels of variability in IS1 and IS200 for strains of E. coli and S. typhimurium show that each class of insertion sequence has a characteristic pattern of transposition within and among host genomes.

Full text

PDF
7864

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Auerswald E. A., Ludwig G., Schaller H. Structural analysis of Tn5. Cold Spring Harb Symp Quant Biol. 1981;45(Pt 1):107–113. doi: 10.1101/sqb.1981.045.01.019. [DOI] [PubMed] [Google Scholar]
  2. Beltran P., Plock S. A., Smith N. H., Whittam T. S., Old D. C., Selander R. K. Reference collection of strains of the Salmonella typhimurium complex from natural populations. J Gen Microbiol. 1991 Mar;137(3):601–606. doi: 10.1099/00221287-137-3-601. [DOI] [PubMed] [Google Scholar]
  3. Bisercić M., Ochman H. Natural populations of Escherichia coli and Salmonella typhimurium harbor the same classes of insertion sequences. Genetics. 1993 Mar;133(3):449–454. doi: 10.1093/genetics/133.3.449. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Calos M. P., Miller J. H. Transposable elements. Cell. 1980 Jul;20(3):579–595. doi: 10.1016/0092-8674(80)90305-0. [DOI] [PubMed] [Google Scholar]
  5. Campbell A. Evolutionary significance of accessory DNA elements in bacteria. Annu Rev Microbiol. 1981;35:55–83. doi: 10.1146/annurev.mi.35.100181.000415. [DOI] [PubMed] [Google Scholar]
  6. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. DuBose R. F., Dykhuizen D. E., Hartl D. L. Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli. Proc Natl Acad Sci U S A. 1988 Sep;85(18):7036–7040. doi: 10.1073/pnas.85.18.7036. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
  9. Gibert I., Barbé J., Casadesús J. Distribution of insertion sequence IS200 in Salmonella and Shigella. J Gen Microbiol. 1990 Dec;136(12):2555–2560. doi: 10.1099/00221287-136-12-2555. [DOI] [PubMed] [Google Scholar]
  10. Gibert I., Carroll K., Hillyard D. R., Barbé J., Casadesus J. IS200 is not a member of the IS600 family of insertion sequences. Nucleic Acids Res. 1991 Mar 25;19(6):1343–1343. doi: 10.1093/nar/19.6.1343. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Green L., Miller R. D., Dykhuizen D. E., Hartl D. L. Distribution of DNA insertion element IS5 in natural isolates of Escherichia coli. Proc Natl Acad Sci U S A. 1984 Jul;81(14):4500–4504. doi: 10.1073/pnas.81.14.4500. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Lam S., Roth J. R. Genetic mapping of IS200 copies in Salmonella typhimurim strain LT2. Genetics. 1983 Dec;105(4):801–811. doi: 10.1093/genetics/105.4.801. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Lam S., Roth J. R. IS200: a Salmonella-specific insertion sequence. Cell. 1983 Oct;34(3):951–960. doi: 10.1016/0092-8674(83)90552-4. [DOI] [PubMed] [Google Scholar]
  14. Lawrence J. G., Hartl D. L. Unusual codon bias occurring within insertion sequences in Escherichia coli. Genetica. 1991;84(1):23–29. doi: 10.1007/BF00123981. [DOI] [PubMed] [Google Scholar]
  15. Lawrence J. G., Ochman H., Hartl D. L. Molecular and evolutionary relationships among enteric bacteria. J Gen Microbiol. 1991 Aug;137(8):1911–1921. doi: 10.1099/00221287-137-8-1911. [DOI] [PubMed] [Google Scholar]
  16. Lawrence J. G., Ochman H., Hartl D. L. The evolution of insertion sequences within enteric bacteria. Genetics. 1992 May;131(1):9–20. doi: 10.1093/genetics/131.1.9. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Milkman R., Bridges M. M. Molecular evolution of the Escherichia coli chromosome. IV. Sequence comparisons. Genetics. 1993 Mar;133(3):455–468. doi: 10.1093/genetics/133.3.455. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Milkman R., Crawford I. P. Clustered third-base substitutions among wild strains of Escherichia coli. Science. 1983 Jul 22;221(4608):378–380. doi: 10.1126/science.6346486. [DOI] [PubMed] [Google Scholar]
  19. Nyman K., Nakamura K., Ohtsubo H., Ohtsubo E. Distribution of the insertion sequence IS1 in gram-negative bacteria. Nature. 1981 Feb 12;289(5798):609–612. doi: 10.1038/289609a0. [DOI] [PubMed] [Google Scholar]
  20. Nyman K., Ohtsubo H., Davison D., Ohtsubo E. Distribution of insertion element IS1 in natural isolates of Escherichia coli. Mol Gen Genet. 1983;189(3):516–518. doi: 10.1007/BF00325920. [DOI] [PubMed] [Google Scholar]
  21. Ochman H., Selander R. K. Standard reference strains of Escherichia coli from natural populations. J Bacteriol. 1984 Feb;157(2):690–693. doi: 10.1128/jb.157.2.690-693.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Ohtsubo H., Ohtsubo E. Nucleotide sequence of an insertion element, IS1. Proc Natl Acad Sci U S A. 1978 Feb;75(2):615–619. doi: 10.1073/pnas.75.2.615. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Perler F., Efstratiadis A., Lomedico P., Gilbert W., Kolodner R., Dodgson J. The evolution of genes: the chicken preproinsulin gene. Cell. 1980 Jun;20(2):555–566. doi: 10.1016/0092-8674(80)90641-8. [DOI] [PubMed] [Google Scholar]
  24. Read H. A., Jaskunas S. R. Isolation of E. coli mutants containing multiple transpositions of IS sequences. Mol Gen Genet. 1980;180(1):157–164. doi: 10.1007/BF00267365. [DOI] [PubMed] [Google Scholar]
  25. Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. doi: 10.1126/science.2448875. [DOI] [PubMed] [Google Scholar]
  26. Sawyer S. A., Dykhuizen D. E., DuBose R. F., Green L., Mutangadura-Mhlanga T., Wolczyk D. F., Hartl D. L. Distribution and abundance of insertion sequences among natural isolates of Escherichia coli. Genetics. 1987 Jan;115(1):51–63. doi: 10.1093/genetics/115.1.51. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Sharp P. M. Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution. J Mol Evol. 1991 Jul;33(1):23–33. doi: 10.1007/BF02100192. [DOI] [PubMed] [Google Scholar]
  28. Sharp P. M., Li W. H. The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 1987 Feb 11;15(3):1281–1295. doi: 10.1093/nar/15.3.1281. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Smith T. F., Waterman M. S. Identification of common molecular subsequences. J Mol Biol. 1981 Mar 25;147(1):195–197. doi: 10.1016/0022-2836(81)90087-5. [DOI] [PubMed] [Google Scholar]
  30. Stanley J., Burnens A., Powell N., Chowdry N., Jones C. The insertion sequence IS200 fingerprints chromosomal genotypes and epidemiological relationships in Salmonella heidelberg. J Gen Microbiol. 1992 Nov;138(11):2329–2336. doi: 10.1099/00221287-138-11-2329. [DOI] [PubMed] [Google Scholar]
  31. Stanley J., Goldsworthy M., Threlfall E. J. Molecular phylogenetic typing of pandemic isolates of Salmonella enteritidis. FEMS Microbiol Lett. 1992 Jan 1;69(2):153–160. doi: 10.1016/0378-1097(92)90620-4. [DOI] [PubMed] [Google Scholar]
  32. Stanley J., Jones C. S., Threlfall E. J. Evolutionary lines among Salmonella enteritidis phage types are identified by insertion sequence IS200 distribution. FEMS Microbiol Lett. 1991 Jul 15;66(1):83–89. doi: 10.1016/0378-1097(91)90425-a. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES