Skip to main content
Journal of Bacteriology logoLink to Journal of Bacteriology
. 1992 Dec;174(23):7495–7499. doi: 10.1128/jb.174.23.7495-7499.1992

Chromosomal insertion sites for phages and plasmids.

A M Campbell 1
PMCID: PMC207458  PMID: 1447124

Full text

PDF
7495

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Andrews B. J., Proteau G. A., Beatty L. G., Sadowski P. D. The FLP recombinase of the 2 micron circle DNA of yeast: interaction with its target sequences. Cell. 1985 Apr;40(4):795–803. doi: 10.1016/0092-8674(85)90339-3. [DOI] [PubMed] [Google Scholar]
  2. Argos P., Landy A., Abremski K., Egan J. B., Haggard-Ljungquist E., Hoess R. H., Kahn M. L., Kalionis B., Narayana S. V., Pierson L. S., 3rd The integrase family of site-specific recombinases: regional similarities and global diversity. EMBO J. 1986 Feb;5(2):433–440. doi: 10.1002/j.1460-2075.1986.tb04229.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bachmann B. J. Linkage map of Escherichia coli K-12, edition 8. Microbiol Rev. 1990 Jun;54(2):130–197. doi: 10.1128/mr.54.2.130-197.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Ball C. A., Johnson R. C. Efficient excision of phage lambda from the Escherichia coli chromosome requires the Fis protein. J Bacteriol. 1991 Jul;173(13):4027–4031. doi: 10.1128/jb.173.13.4027-4031.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Barreiro V., Haggård-Ljungquist E. Attachment sites for bacteriophage P2 on the Escherichia coli chromosome: DNA sequences, localization on the physical map, and detection of a P2-like remnant in E. coli K-12 derivatives. J Bacteriol. 1992 Jun;174(12):4086–4093. doi: 10.1128/jb.174.12.4086-4093.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Bauer C. E., Gardner J. F., Gumport R. I., Weisberg R. A. The effect of attachment site mutations on strand exchange in bacteriophage lambda site-specific recombination. Genetics. 1989 Aug;122(4):727–736. doi: 10.1093/genetics/122.4.727. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Boccard F., Smokvina T., Pernodet J. L., Friedmann A., Guérineau M. Structural analysis of loci involved in pSAM2 site-specific integration in Streptomyces. Plasmid. 1989 Jan;21(1):59–70. doi: 10.1016/0147-619x(89)90087-5. [DOI] [PubMed] [Google Scholar]
  8. Boccard F., Smokvina T., Pernodet J. L., Friedmann A., Guérineau M. The integrated conjugative plasmid pSAM2 of Streptomyces ambofaciens is related to temperate bacteriophages. EMBO J. 1989 Mar;8(3):973–980. doi: 10.1002/j.1460-2075.1989.tb03460.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Brody H., Hill C. W. Attachment site of the genetic element e14. J Bacteriol. 1988 May;170(5):2040–2044. doi: 10.1128/jb.170.5.2040-2044.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Brown D. P., Idler K. B., Katz L. Characterization of the genetic elements required for site-specific integration of plasmid pSE211 in Saccharopolyspora erythraea. J Bacteriol. 1990 Apr;172(4):1877–1888. doi: 10.1128/jb.172.4.1877-1888.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Craig N. L. The mechanism of conservative site-specific recombination. Annu Rev Genet. 1988;22:77–105. doi: 10.1146/annurev.ge.22.120188.000453. [DOI] [PubMed] [Google Scholar]
  12. Enquist L. W., Weisberg R. A. An integration-proficient int mutant of bacteriophage lambda. Mol Gen Genet. 1984;195(1-2):62–69. doi: 10.1007/BF00332725. [DOI] [PubMed] [Google Scholar]
  13. Hauser M. A., Scocca J. J. Site-specific integration of the Haemophilus influenzae bacteriophage HP1. Identification of the points of recombinational strand exchange and the limits of the host attachment site. J Biol Chem. 1992 Apr 5;267(10):6859–6864. [PubMed] [Google Scholar]
  14. Hauser M. A., Scocca J. J. Site-specific integration of the Haemophilus influenzae bacteriophage HP1: location of the boundaries of the phage attachment site. J Bacteriol. 1992 Oct;174(20):6674–6677. doi: 10.1128/jb.174.20.6674-6677.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Hoess R. H., Abremski K. Interaction of the bacteriophage P1 recombinase Cre with the recombining site loxP. Proc Natl Acad Sci U S A. 1984 Feb;81(4):1026–1029. doi: 10.1073/pnas.81.4.1026. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Karlin S., Burge C., Campbell A. M. Statistical analyses of counts and distributions of restriction sites in DNA sequences. Nucleic Acids Res. 1992 Mar 25;20(6):1363–1370. doi: 10.1093/nar/20.6.1363. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Kim S., Landy A. Lambda Int protein bridges between higher order complexes at two distant chromosomal loci attL and attR. Science. 1992 Apr 10;256(5054):198–203. doi: 10.1126/science.1533056. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Kuhstoss S., Richardson M. A., Rao R. N. Site-specific integration in Streptomyces ambofaciens: localization of integration functions in S. ambofaciens plasmid pSAM2. J Bacteriol. 1989 Jan;171(1):16–23. doi: 10.1128/jb.171.1.16-23.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Landy A., Ross W. Viral integration and excision: structure of the lambda att sites. Science. 1977 Sep 16;197(4309):1147–1160. doi: 10.1126/science.331474. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Lee E. C., Gumport R. I., Gardner J. F. Genetic analysis of bacteriophage lambda integrase interactions with arm-type attachment site sequences. J Bacteriol. 1990 Mar;172(3):1529–1538. doi: 10.1128/jb.172.3.1529-1538.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Lee S. C., Omer C. A., Brasch M. A., Cohen S. N. Analysis of recombination occurring at SLP1 att sites. J Bacteriol. 1988 Dec;170(12):5806–5813. doi: 10.1128/jb.170.12.5806-5813.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Leong J. M., Nunes-Düby S. E., Landy A. Generation of single base-pair deletions, insertions, and substitutions by a site-specific recombination system. Proc Natl Acad Sci U S A. 1985 Oct;82(20):6990–6994. doi: 10.1073/pnas.82.20.6990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Leong J. M., Nunes-Düby S., Lesser C. F., Youderian P., Susskind M. M., Landy A. The phi 80 and P22 attachment sites. Primary structure and interaction with Escherichia coli integration host factor. J Biol Chem. 1985 Apr 10;260(7):4468–4477. [PubMed] [Google Scholar]
  24. Lindsey D. F., Mullin D. A., Walker J. R. Characterization of the cryptic lambdoid prophage DLP12 of Escherichia coli and overlap of the DLP12 integrase gene with the tRNA gene argU. J Bacteriol. 1989 Nov;171(11):6197–6205. doi: 10.1128/jb.171.11.6197-6205.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Madon J., Moretti P., Hütter R. Site-specific integration and excision of pMEA100 in Nocardia mediterranei. Mol Gen Genet. 1987 Sep;209(2):257–264. doi: 10.1007/BF00329651. [DOI] [PubMed] [Google Scholar]
  26. Milkman R., Stoltzfus A. Molecular evolution of the Escherichia coli chromosome. II. Clonal segments. Genetics. 1988 Oct;120(2):359–366. doi: 10.1093/genetics/120.2.359. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Mizuuchi K., Weisberg R., Enquist L., Mizuuchi M., Buraczynska M., Foeller C., Hsu P. L., Ross W., Landy A. Structure and function of the phage lambda att site: size, int-binding sites, and location of the crossover point. Cold Spring Harb Symp Quant Biol. 1981;45(Pt 1):429–437. doi: 10.1101/sqb.1981.045.01.057. [DOI] [PubMed] [Google Scholar]
  28. Nagaraja R., Weisberg R. A. Specificity determinants in the attachment sites of bacteriophages HK022 and lambda. J Bacteriol. 1990 Nov;172(11):6540–6550. doi: 10.1128/jb.172.11.6540-6550.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Omer C. A., Cohen S. N. Structural analysis of plasmid and chromosomal loci involved in site-specific excision and integration of the SLP1 element of Streptomyces coelicolor. J Bacteriol. 1986 Jun;166(3):999–1006. doi: 10.1128/jb.166.3.999-1006.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Otsuka A. J., Buoncristiani M. R., Howard P. K., Flamm J., Johnson C., Yamamoto R., Uchida K., Cook C., Ruppert J., Matsuzaki J. The Escherichia coli biotin biosynthetic enzyme sequences predicted from the nucleotide sequence of the bio operon. J Biol Chem. 1988 Dec 25;263(36):19577–19585. [PubMed] [Google Scholar]
  31. Pierson L. S., 3rd, Kahn M. L. Integration of satellite bacteriophage P4 in Escherichia coli. DNA sequences of the phage and host regions involved in site-specific recombination. J Mol Biol. 1987 Aug 5;196(3):487–496. doi: 10.1016/0022-2836(87)90026-x. [DOI] [PubMed] [Google Scholar]
  32. Reiter W. D., Palm P., Yeats S. Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements. Nucleic Acids Res. 1989 Mar 11;17(5):1907–1914. doi: 10.1093/nar/17.5.1907. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Shimada K., Weisberg R. A., Gottesman M. E. Prophage lambda at unusual chromosomal locations. I. Location of the secondary attachment sites and the properties of the lysogens. J Mol Biol. 1972 Feb 14;63(3):483–503. doi: 10.1016/0022-2836(72)90443-3. [DOI] [PubMed] [Google Scholar]
  34. Sosio M., Madoń J., Hütter R. Excision of pIJ408 from the chromosome of Streptomyces glaucescens and its transfer into Streptomyces lividans. Mol Gen Genet. 1989 Jul;218(1):169–176. doi: 10.1007/BF00330580. [DOI] [PubMed] [Google Scholar]
  35. Sun J., Inouye M., Inouye S. Association of a retroelement with a P4-like cryptic prophage (retronphage phi R73) integrated into the selenocystyl tRNA gene of Escherichia coli. J Bacteriol. 1991 Jul;173(13):4171–4181. doi: 10.1128/jb.173.13.4171-4181.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Waldman A. S., Goodman S. D., Scocca J. J. Nucleotide sequences and properties of the sites involved in lysogenic insertion of the bacteriophage HP1c1 genome into the Haemophilus influenzae chromosome. J Bacteriol. 1987 Jan;169(1):238–246. doi: 10.1128/jb.169.1.238-246.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Wharton R. P., Ptashne M. Changing the binding specificity of a repressor by redesigning an alpha-helix. Nature. 1985 Aug 15;316(6029):601–605. doi: 10.1038/316601a0. [DOI] [PubMed] [Google Scholar]
  38. Yagil E., Dolev S., Oberto J., Kislev N., Ramaiah N., Weisberg R. A. Determinants of site-specific recombination in the lambdoid coliphage HK022. An evolutionary change in specificity. J Mol Biol. 1989 Jun 20;207(4):695–717. doi: 10.1016/0022-2836(89)90238-6. [DOI] [PubMed] [Google Scholar]
  39. Yu A., Bertani L. E., Haggård-Ljungquist E. Control of prophage integration and excision in bacteriophage P2: nucleotide sequences of the int gene and att sites. Gene. 1989 Aug 1;80(1):1–11. doi: 10.1016/0378-1119(89)90244-8. [DOI] [PubMed] [Google Scholar]
  40. de Massy B., Studier F. W., Dorgai L., Appelbaum E., Weisberg R. A. Enzymes and sites of genetic recombination: studies with gene-3 endonuclease of phage T7 and with site-affinity mutants of phage lambda. Cold Spring Harb Symp Quant Biol. 1984;49:715–726. doi: 10.1101/sqb.1984.049.01.081. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Bacteriology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES