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. 1989 Feb;171(2):1214–1218. doi: 10.1128/jb.171.2.1214-1218.1989

Construction of an ordered cosmid collection of the Escherichia coli K-12 W3110 chromosome.

S Tabata 1, A Higashitani 1, M Takanami 1, K Akiyama 1, Y Kohara 1, Y Nishimura 1, A Nishimura 1, S Yasuda 1, Y Hirota 1
PMCID: PMC209726  PMID: 2644229

Abstract

A cosmid library of the Escherichia coli K-12 W3110 chromosome was constructed in which clones were assigned to locations on the chromosome map by hybridization and genetic marker complementation tests. Approximately 70% of the genome was represented by this library. The identified clones can be maintained in the homologous system and would facilitate genetic studies of E. coli.

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Selected References

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  1. Asada K., Nakatani S., Takanami M. Cloning of the contiguous 165-kilobase-pair region around the terminus of Escherichia coli K-12 DNA replication. J Bacteriol. 1985 Jul;163(1):398–400. doi: 10.1128/jb.163.1.398-400.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bachmann B. J. Linkage map of Escherichia coli K-12, edition 7. Microbiol Rev. 1983 Jun;47(2):180–230. doi: 10.1128/mr.47.2.180-230.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Berg C. M., Curtiss R., 3rd Transposition derivatives of an Hfr strain of Escherichia coli K-12. Genetics. 1967 Jul;56(3):503–525. doi: 10.1093/genetics/56.3.503. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Birnboim H. C., Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 1979 Nov 24;7(6):1513–1523. doi: 10.1093/nar/7.6.1513. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Bitner R. M., Kuempel P. L. P1 transduction map spanning the replication terminus of Escherichia coli K12. Mol Gen Genet. 1981;184(2):208–212. doi: 10.1007/BF00272906. [DOI] [PubMed] [Google Scholar]
  6. Bohin J. P., Kennedy E. P. Mapping of a locus (mdoA) that affects the biosynthesis of membrane-derived oligosaccharides in Escherichia coli. J Bacteriol. 1984 Mar;157(3):956–957. doi: 10.1128/jb.157.3.956-957.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Carl P. L. Escherichia coli mutants with temperature-sensitive synthesis of DNA. Mol Gen Genet. 1970;109(2):107–122. doi: 10.1007/BF00269647. [DOI] [PubMed] [Google Scholar]
  8. Chen P. L., Carl P. L. Genetic map location of the Escherichia coli dnaG gene. J Bacteriol. 1975 Dec;124(3):1613–1614. doi: 10.1128/jb.124.3.1613-1614.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Clarke L., Carbon J. A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome. Cell. 1976 Sep;9(1):91–99. doi: 10.1016/0092-8674(76)90055-6. [DOI] [PubMed] [Google Scholar]
  10. Clarke L., Carbon J. Biochemical construction and selection of hybrid plasmids containing specific segments of the Escherichia coli genome. Proc Natl Acad Sci U S A. 1975 Nov;72(11):4361–4365. doi: 10.1073/pnas.72.11.4361. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Cooper S. Utilization of d-Methionine by Escherichia coli. J Bacteriol. 1966 Aug;92(2):328–332. doi: 10.1128/jb.92.2.328-332.1966. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Coulson A., Sulston J., Brenner S., Karn J. Toward a physical map of the genome of the nematode Caenorhabditis elegans. Proc Natl Acad Sci U S A. 1986 Oct;83(20):7821–7825. doi: 10.1073/pnas.83.20.7821. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Daniels D. L., Blattner F. R. Mapping using gene encyclopaedias. 1987 Feb 26-Mar 4Nature. 325(6107):831–832. doi: 10.1038/325831a0. [DOI] [PubMed] [Google Scholar]
  14. Evans R., Seeley N. R., Kuempel P. L. Loss of rac locus DNA in merozygotes of Escherichia coli K12. Mol Gen Genet. 1979 Oct 1;175(3):245–250. doi: 10.1007/BF00397223. [DOI] [PubMed] [Google Scholar]
  15. Fuchs J. A., Karlström H. O. Mapping of nrdA and nrdB in Escherichia coli K-12. J Bacteriol. 1976 Dec;128(3):810–814. doi: 10.1128/jb.128.3.810-814.1976. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Glassberg J., Meyer R. R., Kornberg A. Mutant single-strand binding protein of Escherichia coli: genetic and physiological characterization. J Bacteriol. 1979 Oct;140(1):14–19. doi: 10.1128/jb.140.1.14-19.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Goss T. J., Datta P. Escherichia coli K-12 mutation that inactivates biodegradative threonine dehydratase by transposon Tn5 insertion. J Bacteriol. 1984 Jun;158(3):826–831. doi: 10.1128/jb.158.3.826-831.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. HOWARD-FLANDERS P., SIMSON E., THERIOT L. A LOCUS THAT CONTROLS FILAMENT FORMATION AND SENSITIVITY TO RADIATION IN ESCHERICHIA COLI K-12. Genetics. 1964 Feb;49:237–246. doi: 10.1093/genetics/49.2.237. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Henson J. M., Blinkowa A., Walker J. R. The Escherichia coli dnaW mutation is an allele of the adk gene. Mol Gen Genet. 1982;186(4):488–492. doi: 10.1007/BF00337953. [DOI] [PubMed] [Google Scholar]
  20. Herbert A. A., Guest J. R. Biochemical and genetic studies with lysine+methionine mutants of Escherichia coli: lipoic acid and alpha-ketoglutarate dehydrogenase-less mutants. J Gen Microbiol. 1968 Oct;53(3):363–381. doi: 10.1099/00221287-53-3-363. [DOI] [PubMed] [Google Scholar]
  21. Hill C. W., Harnish B. W. Inversions between ribosomal RNA genes of Escherichia coli. Proc Natl Acad Sci U S A. 1981 Nov;78(11):7069–7072. doi: 10.1073/pnas.78.11.7069. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Hoffmeyer J., Neuhard J. Metabolism of exogenous purine bases and nucleosides by Salmonella typhimurium. J Bacteriol. 1971 Apr;106(1):14–24. doi: 10.1128/jb.106.1.14-24.1971. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Hohn B., Collins J. A small cosmid for efficient cloning of large DNA fragments. Gene. 1980 Nov;11(3-4):291–298. doi: 10.1016/0378-1119(80)90069-4. [DOI] [PubMed] [Google Scholar]
  24. Hohn B. In vitro packaging of lambda and cosmid DNA. Methods Enzymol. 1979;68:299–309. doi: 10.1016/0076-6879(79)68021-7. [DOI] [PubMed] [Google Scholar]
  25. Jones-Mortimer M. C., Kornberg H. L. Genetical analysis of fructose utilization by Escherichia coli. Proc R Soc Lond B Biol Sci. 1974 Sep 17;187(1087):121–131. doi: 10.1098/rspb.1974.0066. [DOI] [PubMed] [Google Scholar]
  26. Kadner R. J., Winkler H. H. Isolation and characterization of mutations affecting the transport of hexose phosphates in Escherichia coli. J Bacteriol. 1973 Feb;113(2):895–900. doi: 10.1128/jb.113.2.895-900.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Kohara Y., Akiyama K., Isono K. The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell. 1987 Jul 31;50(3):495–508. doi: 10.1016/0092-8674(87)90503-4. [DOI] [PubMed] [Google Scholar]
  28. Low B. Formation of merodiploids in matings with a class of Rec- recipient strains of Escherichia coli K12. Proc Natl Acad Sci U S A. 1968 May;60(1):160–167. doi: 10.1073/pnas.60.1.160. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Low B., Gates F., Goldstein T., Söll D. Isolation and partial characterization of temperature-sensitive Escherichia coli mutants with altered leucyl- and seryl-transfer ribonucleic acid synthetases. J Bacteriol. 1971 Nov;108(2):742–750. doi: 10.1128/jb.108.2.742-750.1971. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Nishimura Y., Caro L., Berg C. M., Hirota Y. Chromosome replication in Escherichia coli. IV. Control of chromosome replication and cell division by an integrated episome. J Mol Biol. 1971 Feb 14;55(3):441–456. doi: 10.1016/0022-2836(71)90328-7. [DOI] [PubMed] [Google Scholar]
  31. Oliver D. B. Identification of five new essential genes involved in the synthesis of a secreted protein in Escherichia coli. J Bacteriol. 1985 Jan;161(1):285–291. doi: 10.1128/jb.161.1.285-291.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Olson M. V., Dutchik J. E., Graham M. Y., Brodeur G. M., Helms C., Frank M., MacCollin M., Scheinman R., Frank T. Random-clone strategy for genomic restriction mapping in yeast. Proc Natl Acad Sci U S A. 1986 Oct;83(20):7826–7830. doi: 10.1073/pnas.83.20.7826. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Overath P., Pauli G., Schairer H. U. Fatty acid degradation in Escherichia coli. An inducible acyl-CoA synthetase, the mapping of old-mutations, and the isolation of regulatory mutants. Eur J Biochem. 1969 Feb;7(4):559–574. [PubMed] [Google Scholar]
  34. Pittard J., Wallace B. J. Gene controlling the uptake of shikimic acid by Escherichia coli. J Bacteriol. 1966 Oct;92(4):1070–1075. doi: 10.1128/jb.92.4.1070-1075.1966. [DOI] [PMC free article] [PubMed] [Google Scholar]
  35. Ricard M., Hirota Y. Process of cellular division in Escherichia coli: physiological study on thermosensitive mutants defective in cell division. J Bacteriol. 1973 Oct;116(1):314–322. doi: 10.1128/jb.116.1.314-322.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Robert-Baudouy J. M., Portalier R. C. Mutations affectant le catabolisme du glucuronate chez Escherichia coli K12. Mol Gen Genet. 1974;131(1):31–46. doi: 10.1007/BF00269385. [DOI] [PubMed] [Google Scholar]
  37. Russell R. R., Pittard A. J. Mutants of Escherichia coli unable to make protein at 42 C. J Bacteriol. 1971 Nov;108(2):790–798. doi: 10.1128/jb.108.2.790-798.1971. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Shaw K. J., Berg C. M. Escherichia coli K-12 auxotrophs induced by insertion of the transposable element Tn5. Genetics. 1979 Jul;92(3):741–747. doi: 10.1093/genetics/92.3.741. [DOI] [PMC free article] [PubMed] [Google Scholar]
  39. Shiba K., Ito K., Yura T. Mutation that suppresses the protein export defect of the secY mutation and causes cold-sensitive growth of Escherichia coli. J Bacteriol. 1984 Nov;160(2):696–701. doi: 10.1128/jb.160.2.696-701.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Smith C. L., Econome J. G., Schutt A., Klco S., Cantor C. R. A physical map of the Escherichia coli K12 genome. Science. 1987 Jun 12;236(4807):1448–1453. doi: 10.1126/science.3296194. [DOI] [PubMed] [Google Scholar]
  41. Symington L. S., Morrison P., Kolodner R. Intramolecular recombination of linear DNA catalyzed by the Escherichia coli RecE recombination system. J Mol Biol. 1985 Dec 5;186(3):515–525. doi: 10.1016/0022-2836(85)90126-3. [DOI] [PubMed] [Google Scholar]
  42. Ueno-Nishio S., Backman K. C., Magasanik B. Regulation at the glnL-operator-promoter of the complex glnALG operon of Escherichia coli. J Bacteriol. 1983 Mar;153(3):1247–1251. doi: 10.1128/jb.153.3.1247-1251.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Wechsler J. A., Gross J. D. Escherichia coli mutants temperature-sensitive for DNA synthesis. Mol Gen Genet. 1971;113(3):273–284. doi: 10.1007/BF00339547. [DOI] [PubMed] [Google Scholar]
  44. Whalen W. A., Berg C. M. Gratuitous repression of avtA in Escherichia coli and Salmonella typhimurium. J Bacteriol. 1984 May;158(2):571–574. doi: 10.1128/jb.158.2.571-574.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  45. Wijsman H. J., Pafort H. C. Pleiotropic mutations in Escherichia coli conferring tolerance to glycine and sensitivity to penicillin. Mol Gen Genet. 1974;128(4):349–357. doi: 10.1007/BF00268522. [DOI] [PubMed] [Google Scholar]

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