Abstract
We describe the cloning and the DNA sequence of the Escherichia coli supH missense suppressor and of the supD60(Am) suppressor genes. supH is a mutant form of serU which codes for tRNASer2. The supH coding sequence differs from the wild-type sequence by a single nucleotide change which corresponds to the middle position of the anticodon. The CGA anticodon of wild-type tRNA and CUA anticodon of supD tRNA is changed to CAA in supH tRNA, which is expected to recognize the UUG leucine codon. We propose that the supH suppressor causes the insertion of serine in response to this codon. The temperature sensitivity caused by supH may be due to a conformation of the CAA anticodon in the supH tRNASer that is slightly different than that in the corresponding tRNALeu species.
Full text
PDFSelected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bachmann B. J. Linkage map of Escherichia coli K-12, edition 7. Microbiol Rev. 1983 Jun;47(2):180–230. doi: 10.1128/mr.47.2.180-230.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bergquist P. L., Capecchi M. R. Fractionation of a suppressor sRNA. J Mol Biol. 1966 Aug;19(1):202–206. doi: 10.1016/s0022-2836(66)80061-x. [DOI] [PubMed] [Google Scholar]
- Blank H. U., Söll D. Purification of five leucine transfer ribonucleic acid species from Escherichia coli and their acylation by heterologous leucyl-transfer ribonucleic acid synthetase. J Biol Chem. 1971 Aug 25;246(16):4947–4950. [PubMed] [Google Scholar]
- Blattner F. R., Fiandt M., Hass K. K., Twose P. A., Szybalski W. Deletions and insertions in the immunity region of coliphage lambda: revised measurement of the promoter-startpoint distance. Virology. 1974 Dec;62(2):458–471. doi: 10.1016/0042-6822(74)90407-3. [DOI] [PubMed] [Google Scholar]
- Borck K., Beggs J. D., Brammar W. J., Hopkins A. S., Murray N. E. The construction in vitro of transducing derivatives of phage lambda. Mol Gen Genet. 1976 Jul 23;146(2):199–207. doi: 10.1007/BF00268089. [DOI] [PubMed] [Google Scholar]
- Capecchi M. R., Gussin G. N. Suppression in vitro: Identification of a Serine-sRNA as a "Nonsense" Suppressor. Science. 1965 Jul 23;149(3682):417–422. doi: 10.1126/science.149.3682.417. [DOI] [PubMed] [Google Scholar]
- Drake J. W., Baltz R. H. The biochemistry of mutagenesis. Annu Rev Biochem. 1976;45:11–37. doi: 10.1146/annurev.bi.45.070176.000303. [DOI] [PubMed] [Google Scholar]
- Eggertsson G., Adelberg E. A. Map positions and specificities of suppressor mutations in Escherichia coli K-12. Genetics. 1965 Aug;52(2):319–340. doi: 10.1093/genetics/52.2.319. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eggertsson G. Suppressors causing temperature sensitivity of growth in Escherichia coli. Genetics. 1968 Oct;60(2):269–280. doi: 10.1093/genetics/60.2.269. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Engelhardt D. L., Webster R. E., Wilhelm R. C., Zinder N. In vitro studies on the mechanism of suppression of a nonsense mutation. Proc Natl Acad Sci U S A. 1965 Dec;54(6):1791–1797. doi: 10.1073/pnas.54.6.1791. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Garen A., Garen S., Wilhelm R. C. Suppressor genes for nonsense mutations. I. The Su-1, Su-2 and Su-3 genes of Escherichia coli. J Mol Biol. 1965 Nov;14(1):167–178. doi: 10.1016/s0022-2836(65)80238-8. [DOI] [PubMed] [Google Scholar]
- Grosjean H., Söll D. G., Crothers D. M. Studies of the complex between transfer RNAs with complementary anticodons. I. Origins of enhanced affinity between complementary triplets. J Mol Biol. 1976 May 25;103(3):499–519. doi: 10.1016/0022-2836(76)90214-x. [DOI] [PubMed] [Google Scholar]
- Hawley D. K., McClure W. R. Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res. 1983 Apr 25;11(8):2237–2255. doi: 10.1093/nar/11.8.2237. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hoffman E. P., Wilhelm R. C. Genetic mapping and dominance of the amber suppressor, Su1 (supD), in Escherichia coli K-12. J Bacteriol. 1970 Jul;103(1):32–36. doi: 10.1128/jb.103.1.32-36.1970. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hohn B., Murray K. Packaging recombinant DNA molecules into bacteriophage particles in vitro. Proc Natl Acad Sci U S A. 1977 Aug;74(8):3259–3263. doi: 10.1073/pnas.74.8.3259. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ikemura T. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. J Mol Biol. 1981 Feb 15;146(1):1–21. doi: 10.1016/0022-2836(81)90363-6. [DOI] [PubMed] [Google Scholar]
- Ikemura T., Ozeki H. Gross map location of Escherichia coli transfer RNA genes. J Mol Biol. 1977 Dec 5;117(2):419–446. doi: 10.1016/0022-2836(77)90136-x. [DOI] [PubMed] [Google Scholar]
- Messing J., Crea R., Seeburg P. H. A system for shotgun DNA sequencing. Nucleic Acids Res. 1981 Jan 24;9(2):309–321. doi: 10.1093/nar/9.2.309. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Messing J., Vieira J. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments. Gene. 1982 Oct;19(3):269–276. doi: 10.1016/0378-1119(82)90016-6. [DOI] [PubMed] [Google Scholar]
- Murgola E. J., Bryant J. E. Glutamic acid codon suppressors derived from a unique species of glycine transfer ribonucleic acid. J Bacteriol. 1980 Apr;142(1):131–137. doi: 10.1128/jb.142.1.131-137.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murgola E. J., Childress J. R. Suppressors of a UGG missense mutation in Escherichia coli. J Bacteriol. 1980 Jul;143(1):285–292. doi: 10.1128/jb.143.1.285-292.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murgola E. J., Pagel F. T. Codon recognition by glycine transfer RNAs of Escherichia coli in vivo. J Mol Biol. 1980 Apr 25;138(4):833–844. doi: 10.1016/0022-2836(80)90067-4. [DOI] [PubMed] [Google Scholar]
- Murgola E. J., Prather N. E., Hadley K. H. Variations among glyV-derived glycine tRNA suppressors of glutamic acid codons. J Bacteriol. 1978 Jun;134(3):801–807. doi: 10.1128/jb.134.3.801-807.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murgola E. J., Prather N. E., Mims B. H., Pagel F. T., Hijazi K. A. Anticodon shift in tRNA: a novel mechanism in missense and nonsense suppression. Proc Natl Acad Sci U S A. 1983 Aug;80(16):4936–4939. doi: 10.1073/pnas.80.16.4936. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murgola E. J., Prather N. E., Pagel F. T., Mims B. H., Hijazi K. A. Missense and nonsense suppressors derived from a glycine tRNA by nucleotide insertion and deletion in vivo. Mol Gen Genet. 1984;193(1):76–81. doi: 10.1007/BF00327417. [DOI] [PubMed] [Google Scholar]
- Murray N. E., Brammar W. J., Murray K. Lambdoid phages that simplify the recovery of in vitro recombinants. Mol Gen Genet. 1977 Jan 7;150(1):53–61. doi: 10.1007/BF02425325. [DOI] [PubMed] [Google Scholar]
- NOTANI G. W., ENGELHARDT D. L., KONIGSBERG W., ZINDER N. D. SUPPRESSION OF A COAT PROTEIN MUTANT OF THE BACTERIOPHAGE F2. J Mol Biol. 1965 Jun;12:439–447. doi: 10.1016/s0022-2836(65)80266-2. [DOI] [PubMed] [Google Scholar]
- Person S., Osborn M. The conversion of amber suppressors to ochre suppressors. Proc Natl Acad Sci U S A. 1968 Jul;60(3):1030–1037. doi: 10.1073/pnas.60.3.1030. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Prather N. E., Murgola E. J., Mims B. H. Nucleotide insertion in the anticodon loop of a glycine transfer RNA causes missense suppression. Proc Natl Acad Sci U S A. 1981 Dec;78(12):7408–7411. doi: 10.1073/pnas.78.12.7408. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Prather N. E., Murgola E. J., Mims B. H. Primary structure of an unusual glycine tRNA UGA suppressor. Nucleic Acids Res. 1981 Dec 11;9(23):6421–6428. doi: 10.1093/nar/9.23.6421. [DOI] [PMC free article] [PubMed] [Google Scholar]
- SAITO H., MIURA K. I. PREPARATION OF TRANSFORMING DEOXYRIBONUCLEIC ACID BY PHENOL TREATMENT. Biochim Biophys Acta. 1963 Aug 20;72:619–629. [PubMed] [Google Scholar]
- STRETTON A. O., BRENNER S. MOLECULAR CONSEQUENCES OF THE AMBER MUTATION AND ITS SUPPRESSION. J Mol Biol. 1965 Jun;12:456–465. doi: 10.1016/s0022-2836(65)80268-6. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schwartz I., Klotsky R. A., Elseviers D., Gallagher P. J., Krauskopf M., Siddiqui M. A., Wong J. F., Roe B. A. Molecular cloning and sequencing of pheU, a gene for Escherichia coli tRNAPhe. Nucleic Acids Res. 1983 Jul 11;11(13):4379–4389. doi: 10.1093/nar/11.13.4379. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Steege D. A. A nucleotide change in the anticodon of an Escherichia coli serine transfer RNA results in supD-amber suppression. Nucleic Acids Res. 1983 Jun 11;11(11):3823–3832. doi: 10.1093/nar/11.11.3823. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Steege D. A., Horabin J. I. Temperature-inducible amber suppressor: construction of plasmids containing the Escherichia coli serU- (supD-) gene under control of the bacteriophage lambda pL promoter. J Bacteriol. 1983 Sep;155(3):1417–1425. doi: 10.1128/jb.155.3.1417-1425.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Steege D. A., Low B. Isolation and characterization of lambda transducing bacteriophages for the su1+ (supD minus) amber suppressor of Escherichia coli. J Bacteriol. 1975 Apr;122(1):120–128. doi: 10.1128/jb.122.1.120-128.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Söll D. Studies on polynucleotides. LXXXV. Partial purification of an amber supressor tRNA and studies on in vitro suppression. J Mol Biol. 1968 May 28;34(1):175–187. doi: 10.1016/0022-2836(68)90243-x. [DOI] [PubMed] [Google Scholar]
- Thorbjarnardóttir S. H., Magnúsdóttir R. A., Eggertsson G. Mutations determining generalized resistance to aminoglycoside antibiotics in Escherichia coli. Mol Gen Genet. 1978 Apr 25;161(1):89–98. doi: 10.1007/BF00266619. [DOI] [PubMed] [Google Scholar]
- WEIGERT M. G., GAREN A. AMINO ACID SUBSTITUTIONS RESULTING FROM SUPPRESSION OF NONSENSE MUTATIONS. I. SERINE INSERTION BY THE SU-1 SUPPRESSOR GENE. J Mol Biol. 1965 Jun;12:448–455. doi: 10.1016/s0022-2836(65)80267-4. [DOI] [PubMed] [Google Scholar]
- Yamaizumi Z., Kuchino Y., Harada F., Nishimura S., McCloskey J. A. Primary structure of Escherichia coli tRNA UUR Leu. Presence of an unknown adenosine derivative in the first position of the anticodon which recognizes the UU codon series. J Biol Chem. 1980 Mar 10;255(5):2220–2225. [PubMed] [Google Scholar]
- Zinder N. D., Boeke J. D. The filamentous phage (Ff) as vectors for recombinant DNA--a review. Gene. 1982 Jul-Aug;19(1):1–10. doi: 10.1016/0378-1119(82)90183-4. [DOI] [PubMed] [Google Scholar]