Abstract
The genome of the lipid-containing bacteriophage phi 6 contains three segments of double-stranded RNA. We determined the nucleotide sequence of cDNA derived from the largest RNA segment (L). This segment specifies the procapsid proteins necessary for transcription and replication of the phi 6 genome. The coding sequences of the four proteins on this segment were identified on the basis of size and the correlation of predicted N-terminal amino acid sequences with those found through analysis of isolated proteins. This report completes the sequence analysis of phi 6. This constitutes the first complete sequence of a double-stranded RNA genome virus.
Full text
PDFSelected References
These references are in PubMed. This may not be the complete list of references from this article.
- Bamford D. H., Romantschuk M., Somerharju P. J. Membrane fusion in prokaryotes: bacteriophage phi 6 membrane fuses with the Pseudomonas syringae outer membrane. EMBO J. 1987 May;6(5):1467–1473. doi: 10.1002/j.1460-2075.1987.tb02388.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Clewell D. B. Nature of Col E 1 plasmid replication in Escherichia coli in the presence of the chloramphenicol. J Bacteriol. 1972 May;110(2):667–676. doi: 10.1128/jb.110.2.667-676.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Coplin D. L., Van Etten J. L., Koski R. K., Vidaver A. K. Intermediates in the biosynthesis of double-stranded ribonucleic acids of bacteriophage phi 6. Proc Natl Acad Sci U S A. 1975 Mar;72(3):849–853. doi: 10.1073/pnas.72.3.849. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Day L. A., Mindich L. The molecular weight of bacteriophage phi 6 and its nucleocapsid. Virology. 1980 Jun;103(2):376–385. doi: 10.1016/0042-6822(80)90196-8. [DOI] [PubMed] [Google Scholar]
- Doolittle R. F., Johnson M. S., Husain I., Van Houten B., Thomas D. C., Sancar A. Domainal evolution of a prokaryotic DNA repair protein and its relationship to active-transport proteins. Nature. 1986 Oct 2;323(6087):451–453. doi: 10.1038/323451a0. [DOI] [PubMed] [Google Scholar]
- Fujimura T., Esteban R., Wickner R. B. In vitro L-A double-stranded RNA synthesis in virus-like particles from Saccharomyces cerevisiae. Proc Natl Acad Sci U S A. 1986 Jun;83(12):4433–4437. doi: 10.1073/pnas.83.12.4433. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gros P., Croop J., Housman D. Mammalian multidrug resistance gene: complete cDNA sequence indicates strong homology to bacterial transport proteins. Cell. 1986 Nov 7;47(3):371–380. doi: 10.1016/0092-8674(86)90594-5. [DOI] [PubMed] [Google Scholar]
- Higgins C. F., Hiles I. D., Salmond G. P., Gill D. R., Downie J. A., Evans I. J., Holland I. B., Gray L., Buckel S. D., Bell A. W. A family of related ATP-binding subunits coupled to many distinct biological processes in bacteria. Nature. 1986 Oct 2;323(6087):448–450. doi: 10.1038/323448a0. [DOI] [PubMed] [Google Scholar]
- Iba H., Watanabe T., Emori Y., Okada Y. Three double-stranded RNA genome segments of bacteriophage phi 6 have homologous terminal sequences. FEBS Lett. 1982 May 3;141(1):111–115. doi: 10.1016/0014-5793(82)80027-6. [DOI] [PubMed] [Google Scholar]
- Ktistakis N. T., Lang D. The dodecahedral framework of the bacteriophage phi 6 nucleocapsid is composed of protein P1. J Virol. 1987 Aug;61(8):2621–2623. doi: 10.1128/jvi.61.8.2621-2623.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lehman J. F., Mindich L. The isolation of new mutants of bacteriophage phi 6. Virology. 1979 Aug;97(1):164–170. doi: 10.1016/0042-6822(79)90382-9. [DOI] [PubMed] [Google Scholar]
- McGraw T., Mindich L., Frangione B. Nucleotide sequence of the small double-stranded RNA segment of bacteriophage phi 6: novel mechanism of natural translational control. J Virol. 1986 Apr;58(1):142–151. doi: 10.1128/jvi.58.1.142-151.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McGraw T., Yang H. L., Mindich L. Establishment of a physical and genetic map for bacteriophage PRD1. Mol Gen Genet. 1983;190(2):237–244. doi: 10.1007/BF00330646. [DOI] [PubMed] [Google Scholar]
- Messing J. New M13 vectors for cloning. Methods Enzymol. 1983;101:20–78. doi: 10.1016/0076-6879(83)01005-8. [DOI] [PubMed] [Google Scholar]
- Mindich L., Davidoff-Abelson R. The characterization of a 120 S particle formed during phi 6 infection. Virology. 1980 Jun;103(2):386–391. doi: 10.1016/0042-6822(80)90197-x. [DOI] [PubMed] [Google Scholar]
- Mindich L., Lehman J. Characterization of phi 6 mutants that are temperature sensitive in the morphogenetic protein P12. Virology. 1983 Jun;127(2):438–445. doi: 10.1016/0042-6822(83)90156-3. [DOI] [PubMed] [Google Scholar]
- Mindich L., MacKenzie G., Strassman J., McGraw T., Metzger S., Romantschuk M., Bamford D. cDNA cloning of portions of the bacteriophage phi 6 genome. J Bacteriol. 1985 Jun;162(3):992–999. doi: 10.1128/jb.162.3.992-999.1985. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Olkkonen V. M., Bamford D. H. The nucleocapsid of the lipid-containing double-stranded RNA bacteriophage phi 6 contains a protein skeleton consisting of a single polypeptide species. J Virol. 1987 Aug;61(8):2362–2367. doi: 10.1128/jvi.61.8.2362-2367.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Revel H. R., Ewen M. E., Brusslan J., Pagratis N. Generation of cDNA clones of the bacteriophage phi 6 segmented dsRNA genome: characterization and expression of L segment clones. Virology. 1986 Dec;155(2):402–417. doi: 10.1016/0042-6822(86)90203-5. [DOI] [PubMed] [Google Scholar]
- Sanger F., Coulson A. R., Hong G. F., Hill D. F., Petersen G. B. Nucleotide sequence of bacteriophage lambda DNA. J Mol Biol. 1982 Dec 25;162(4):729–773. doi: 10.1016/0022-2836(82)90546-0. [DOI] [PubMed] [Google Scholar]
- Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sinclair J. F., Mindich L. RNA synthesis during infection with bacteriophage phi6. Virology. 1976 Nov;75(1):209–217. doi: 10.1016/0042-6822(76)90019-2. [DOI] [PubMed] [Google Scholar]
- Sinclair J. F., Tzagoloff A., Levine D., Mindich L. Proteins of bacteriophage phi6. J Virol. 1975 Sep;16(3):685–695. doi: 10.1128/jvi.16.3.685-695.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vidaver A. K., Koski R. K., Van Etten J. L. Bacteriophage phi6: a Lipid-Containing Virus of Pseudomonas phaseolicola. J Virol. 1973 May;11(5):799–805. doi: 10.1128/jvi.11.5.799-805.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Walker J. E., Saraste M., Runswick M. J., Gay N. J. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1982;1(8):945–951. doi: 10.1002/j.1460-2075.1982.tb01276.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yang Y., Lang D. Electron microscopy of bacteriophage phi 6 nucleocapsid: three-dimensional image analysis. J Virol. 1984 Aug;51(2):484–488. doi: 10.1128/jvi.51.2.484-488.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]