Skip to main content
Journal of Virology logoLink to Journal of Virology
. 1983 Jul;47(1):125–136. doi: 10.1128/jvi.47.1.125-136.1983

Capped and conserved terminal structures in human rotavirus genome double-stranded RNA segments.

M Imai, K Akatani, N Ikegami, Y Furuichi
PMCID: PMC255212  PMID: 6306269

Abstract

Both 3'- and 5'-terminal structures of human rotavirus genome double-stranded RNA segments were determined. RNAs were labeled at the 3'-termini with [32P]pCp by incubation with RNA ligase and at the 5'-termini with [32P]phosphate by polynucleotide kinase or, in the case of 5' caps, with 3H by chemical modification with [3H]NaBH4. Examination of radiolabeled termini released by digestion with several base-specific RNases revealed that rotavirus RNA segments are base paired end-to-end and contain the same terminal structures: (formula; see text)

Full text

PDF
128

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Banerjee A. K. 5'-terminal cap structure in eucaryotic messenger ribonucleic acids. Microbiol Rev. 1980 Jun;44(2):175–205. doi: 10.1128/mr.44.2.175-205.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Both G. W., Bellamy A. R., Street J. E., Siegman L. J. A general strategy for cloning double-stranded RNA: nucleotide sequence of the Simian-11 rotavirus gene 8. Nucleic Acids Res. 1982 Nov 25;10(22):7075–7088. doi: 10.1093/nar/10.22.7075. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Cameron V., Uhlenbeck O. C. 3'-Phosphatase activity in T4 polynucleotide kinase. Biochemistry. 1977 Nov 15;16(23):5120–5126. doi: 10.1021/bi00642a027. [DOI] [PubMed] [Google Scholar]
  4. Cashdollar L. W., Esparza J., Hudson G. R., Chmelo R., Lee P. W., Joklik W. K. Cloning the double-stranded RNA genes of reovirus: sequence of the cloned S2 gene. Proc Natl Acad Sci U S A. 1982 Dec;79(24):7644–7648. doi: 10.1073/pnas.79.24.7644. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Desselberger U., Racaniello V. R., Zazra J. J., Palese P. The 3' and 5'-terminal sequences of influenza A, B and C virus RNA segments are highly conserved and show partial inverted complementarity. Gene. 1980 Feb;8(3):315–328. doi: 10.1016/0378-1119(80)90007-4. [DOI] [PubMed] [Google Scholar]
  6. Dottin R. P., Weiner A. M., Lodish F. 5' terminal nucleotide sequences of the messenger RNA's of Dictyostelium discoideum. Cell. 1976 Jun;8(2):233–244. doi: 10.1016/0092-8674(76)90007-6. [DOI] [PubMed] [Google Scholar]
  7. Furuichi Y., Miura K. I. Identity of the 3'-terminal sequences in ten genome segments of silkworm cytoplasmic polyhedrosis virus. Virology. 1973 Oct;55(2):418–425. doi: 10.1016/0042-6822(73)90183-9. [DOI] [PubMed] [Google Scholar]
  8. Furuichi Y., Miura K. A blocked structure at the 5' terminus of mRNA from cytoplasmic polyhedrosis virus. Nature. 1975 Jan 31;253(5490):374–375. doi: 10.1038/253374a0. [DOI] [PubMed] [Google Scholar]
  9. Furuichi Y., Morgan M., Muthukrishnan S., Shatkin A. J. Reovirus messenger RNA contains a methylated, blocked 5'-terminal structure: m-7G(5')ppp(5')G-MpCp-. Proc Natl Acad Sci U S A. 1975 Jan;72(1):362–366. doi: 10.1073/pnas.72.1.362. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Furuichi Y., Muthukrishnan S., Shatkin A. J. 5'-Terminal m-7G(5')ppp(5')G-m-p in vivo: identification in reovirus genome RNA. Proc Natl Acad Sci U S A. 1975 Feb;72(2):742–745. doi: 10.1073/pnas.72.2.742. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Furuichi Y., Muthukrishnan S., Tomasz J., Shatkin A. J. Mechanism of formation of reovirus mRNA 5'-terminal blocked and methylated sequence, m7GpppGmpC. J Biol Chem. 1976 Aug 25;251(16):5043–5053. [PubMed] [Google Scholar]
  12. Hruska J. F., Notter M. F., Menegus M. A., Steinhoff M. C. RNA polymerase associated with human rotaviruses in diarrhea stools. J Virol. 1978 May;26(2):544–546. doi: 10.1128/jvi.26.2.544-546.1978. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Iba H., Watanabe T., Emori Y., Okada Y. Three double-stranded RNA genome segments of bacteriophage phi 6 have homologous terminal sequences. FEBS Lett. 1982 May 3;141(1):111–115. doi: 10.1016/0014-5793(82)80027-6. [DOI] [PubMed] [Google Scholar]
  14. Imai M., Richardson M. A., Ikegami N., Shatkin A. J., Furuichi Y. Molecular cloning of double-stranded RNA virus genomes. Proc Natl Acad Sci U S A. 1983 Jan;80(2):373–377. doi: 10.1073/pnas.80.2.373. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Kalica A. R., Wyatt R. G., Kapikian A. Z. Detection of differences among human and animal rotaviruses, using analysis of viral RNA. J Am Vet Med Assoc. 1978 Sep 1;173(5 Pt 2):531–537. [PubMed] [Google Scholar]
  16. Kuchino Y., Nishimura S., Smith R. E., Furuichi Y. Homologous Terminal Sequences in the Double-Stranded RNA Genome Segments of Cytoplasmic Polyhedrosis Virus of the Silkworm Bombyx mori. J Virol. 1982 Nov;44(2):538–543. doi: 10.1128/jvi.44.2.538-543.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Mager W. H., Klootwijk J., Klein I. Minimal methylation of yeast messenger RNA. Mol Biol Rep. 1976 Sep;3(1):9–17. doi: 10.1007/BF00357204. [DOI] [PubMed] [Google Scholar]
  18. Malek L. T., Breter H. J., Hellmann G. M., Friderici K. H., Rottman F. M., Rhoads R. E. 5'-Terminal structure of hen ovalbumin messenger ribonucleic acid. J Biol Chem. 1979 Oct 25;254(20):10415–10420. [PubMed] [Google Scholar]
  19. Matsuno S., Inouye S., Kono R. Plaque assay of neonatal calf diarrhea virus and the neutralizing antibody in human sera. J Clin Microbiol. 1977 Jan;5(1):1–4. doi: 10.1128/jcm.5.1.1-4.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Matsuno S., Nakajima K. RNA of rotavirus: comparison of RNAs of human and animal rotaviruses. J Virol. 1982 Feb;41(2):710–714. doi: 10.1128/jvi.41.2.710-714.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. McCrae M. A., Joklik W. K. The nature of the polypeptide encoded by each of the 10 double-stranded RNA segments of reovirus type 3. Virology. 1978 Sep;89(2):578–593. doi: 10.1016/0042-6822(78)90199-x. [DOI] [PubMed] [Google Scholar]
  22. McCrae M. A. Terminal structure of reovirus RNAs. J Gen Virol. 1981 Aug;55(Pt 2):393–403. doi: 10.1099/0022-1317-55-2-393. [DOI] [PubMed] [Google Scholar]
  23. McNulty M. S. Rotaviruses. J Gen Virol. 1978 Jul;40(1):1–18. doi: 10.1099/0022-1317-40-1-1. [DOI] [PubMed] [Google Scholar]
  24. Miura K., Watanabe K., Sugiura M., Shatkin A. J. The 5'-terminal nucleotide sequences of the double-stranded RNA of human reovirus. Proc Natl Acad Sci U S A. 1974 Oct;71(10):3979–3983. doi: 10.1073/pnas.71.10.3979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Robertson J. S. 5' and 3' terminal nucleotide sequences of the RNA genome segments of influenza virus. Nucleic Acids Res. 1979 Aug 24;6(12):3745–3757. doi: 10.1093/nar/6.12.3745. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Shimotohno K., Kodama Y., Hashimoto J., Miura K. I. Importance of 5'-terminal blocking structure to stabilize mRNA in eukaryotic protein synthesis. Proc Natl Acad Sci U S A. 1977 Jul;74(7):2734–2738. doi: 10.1073/pnas.74.7.2734. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Skehel J. J., Hay A. J. Nucleotide sequences at the 5' termini of influenza virus RNAs and their transcripts. Nucleic Acids Res. 1978 Apr;5(4):1207–1219. doi: 10.1093/nar/5.4.1207. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Smith R. E., Morgan M. A., Furuichi Y. Separation of the plus and minus strands of cytoplasmic polyhedrosis virus and human reovirus double-stranded genome RNAs by gel electrophoresis. Nucleic Acids Res. 1981 Oct 24;9(20):5269–5286. doi: 10.1093/nar/9.20.5269. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Spencer E., Arias M. L. In vitro transcription catalyzed by heat-treated human rotavirus. J Virol. 1981 Oct;40(1):1–10. doi: 10.1128/jvi.40.1.1-10.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Journal of Virology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES