Skip to main content
Journal of Clinical Microbiology logoLink to Journal of Clinical Microbiology
. 1994 Feb;32(2):311–317. doi: 10.1128/jcm.32.2.311-317.1994

Serotypic differentiation of rotaviruses in field samples from diarrheic pigs by using nucleic acid probes specific for porcine VP4 and human and porcine VP7 genes.

B I Rosen 1, A V Parwani 1, S Lopez 1, J Flores 1, L J Saif 1
PMCID: PMC263030  PMID: 8150940

Abstract

Of 216 fecal and intestinal samples collected from nursing or weaned diarrheic pigs in the United States and Canada, 57 were identified as group A rotavirus positive by RNA electrophoresis and silver staining. Fifty-seven and 52 rotavirus-positive samples were analyzed by hybridization with Gottfried and OSU PCR-derived gene 9 and 4 probes, respectively. Only 17 samples were identified with either homologous VP4 (P)- or VP7 (G)-coding genes or both. One rotavirus identified as G4 and P7 was similar to the previously characterized interserotype rotavirus, SB-1A. Additional hybridization analyses were performed with PCR-derived probes prepared from gene 9 cDNA of the human rotaviruses Wa (G1), DS-1 (G2), and P (G3) and of the porcine rotavirus YM (G11). Eleven of 52 samples collected and analyzed from swine in Ohio, California, and Nebraska were identified as G11. No samples with G1-, G2-, or G3-type specificities were detected among the 25 of 57 rotavirus-positive samples analyzed with human rotavirus-derived probes. Further investigations with a PCR-derived gene 4 probe prepared from porcine rotavirus YM revealed hybridization specificities similar to those of the OSU gene 4 probe.

Full text

PDF
313

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Arias C. F., Ruiz A. M., López S. Further antigenic characterization of porcine rotavirus YM. J Clin Microbiol. 1989 Dec;27(12):2871–2873. doi: 10.1128/jcm.27.12.2871-2873.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bellinzoni R. B., Mattion N. M., Matson D. O., Blackhall J., La Torre J. L., Scodeller E. A., Urasawa S., Taniguchi K., Estes M. K. Porcine rotaviruses antigenically related to human rotavirus serotypes 1 and 2. J Clin Microbiol. 1990 Mar;28(3):633–636. doi: 10.1128/jcm.28.3.633-636.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bohl E. H., Theil K. W., Saif L. J. Isolation and serotyping of porcine rotaviruses and antigenic comparison with other rotaviruses. J Clin Microbiol. 1984 Feb;19(2):105–111. doi: 10.1128/jcm.19.2.105-111.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Estes M. K., Cohen J. Rotavirus gene structure and function. Microbiol Rev. 1989 Dec;53(4):410–449. doi: 10.1128/mr.53.4.410-449.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Flores J., Sears J., Schael I. P., White L., Garcia D., Lanata C., Kapikian A. Z. Identification of human rotavirus serotype by hybridization to polymerase chain reaction-generated probes derived from a hyperdivergent region of the gene encoding outer capsid protein VP7. J Virol. 1990 Aug;64(8):4021–4024. doi: 10.1128/jvi.64.8.4021-4024.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Gatti M. S., de Castro A. F., Ferraz M. M., Fialho A. M., Pereira H. G. Viruses with bisegmented double-stranded RNA in pig faeces. Res Vet Sci. 1989 Nov;47(3):397–398. [PubMed] [Google Scholar]
  7. Gorziglia M., Aguirre Y., Hoshino Y., Esparza J., Blumentals I., Askaa J., Thompson M., Glass R. I., Kapikian A. Z., Chanock R. M. VP7 serotype-specific glycoprotein of OSU porcine rotavirus: coding assignment and gene sequence. J Gen Virol. 1986 Nov;67(Pt 11):2445–2454. doi: 10.1099/0022-1317-67-11-2445. [DOI] [PubMed] [Google Scholar]
  8. Hoblet K. H., Saif L. J., Kohler E. M., Theil K. W., Bech-Nielsen S., Stitzlein G. A. Efficacy of an orally administered modified-live porcine-origin rotavirus vaccine against postweaning diarrhea in pigs. Am J Vet Res. 1986 Aug;47(8):1697–1703. [PubMed] [Google Scholar]
  9. Hoshino Y., Wyatt R. G., Greenberg H. B., Flores J., Kapikian A. Z. Serotypic similarity and diversity of rotaviruses of mammalian and avian origin as studied by plaque-reduction neutralization. J Infect Dis. 1984 May;149(5):694–702. doi: 10.1093/infdis/149.5.694. [DOI] [PubMed] [Google Scholar]
  10. Huang J., Nagesha H. S., Dyall-Smith M. L., Holmes I. H. Comparative sequence analysis of VP7 genes from five Australian porcine rotaviruses. Arch Virol. 1989;109(3-4):173–183. doi: 10.1007/BF01311079. [DOI] [PubMed] [Google Scholar]
  11. Ijaz M. K., Attah-Poku S. K., Redmond M. J., Parker M. D., Sabara M. I., Frenchick P., Babiuk L. A. Heterotypic passive protection induced by synthetic peptides corresponding to VP7 and VP4 of bovine rotavirus. J Virol. 1991 Jun;65(6):3106–3113. doi: 10.1128/jvi.65.6.3106-3113.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Liprandi F., Rodriguez I., Piña C., Larralde G., Gorziglia M. VP4 monotype specificities among porcine rotavirus strains of the same VP4 serotype. J Virol. 1991 Mar;65(3):1658–1661. doi: 10.1128/jvi.65.3.1658-1661.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. López S., López I., Romero P., Méndez E., Soberón X., Arias C. F. Rotavirus YM gene 4: analysis of its deduced amino acid sequence and prediction of the secondary structure of the VP4 protein. J Virol. 1991 Jul;65(7):3738–3745. doi: 10.1128/jvi.65.7.3738-3745.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Mattion N. M., Bellinzoni R. C., Blackhall J. O., La Torre J. L., Scodeller E. A. Antigenic characterization of swine rotaviruses in Argentina. J Clin Microbiol. 1989 Apr;27(4):795–798. doi: 10.1128/jcm.27.4.795-798.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Midthun K., Valdesuso J., Hoshino Y., Flores J., Kapikian A. Z., Chanock R. M. Analysis by RNA-RNA hybridization assay of intertypic rotaviruses suggests that gene reassortment occurs in vivo. J Clin Microbiol. 1987 Feb;25(2):295–300. doi: 10.1128/jcm.25.2.295-300.1987. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Nagesha H. S., Holmes I. H. New porcine rotavirus serotype antigenically related to human rotavirus serotype 3. J Clin Microbiol. 1988 Feb;26(2):171–174. doi: 10.1128/jcm.26.2.171-174.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Nagesha H. S., Holmes I. H. VP4 relationships between porcine and other rotavirus serotypes. Arch Virol. 1991;116(1-4):107–118. doi: 10.1007/BF01319235. [DOI] [PubMed] [Google Scholar]
  18. Perez-Schael I., Blanco M., Vilar M., Garcia D., White L., Gonzalez R., Kapikian A. Z., Flores J. Clinical studies of a quadrivalent rotavirus vaccine in Venezuelan infants. J Clin Microbiol. 1990 Mar;28(3):553–558. doi: 10.1128/jcm.28.3.553-558.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Pongsuwanne Y., Taniguchi K., Choonthanom M., Chiwakul M., Susansook T., Saguanwongse S., Jayavasu C., Urasawa S. Subgroup and serotype distributions of human, bovine, and porcine rotavirus in Thailand. J Clin Microbiol. 1989 Sep;27(9):1956–1960. doi: 10.1128/jcm.27.9.1956-1960.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Rosen B. I., Parwani A. V., Gorziglia M., Larralde G., Saif L. J. Characterization of full-length and polymerase chain reaction-derived partial-length Gottfried and OSU gene 4 probes for serotypic differentiation of porcine rotaviruses. J Clin Microbiol. 1992 Oct;30(10):2644–2652. doi: 10.1128/jcm.30.10.2644-2652.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Rosen B. I., Saif L. J., Jackwood D. J., Gorziglia M. Hybridization probes for the detection and differentiation of two serotypes of porcine rotavirus. Vet Microbiol. 1990 Sep;24(3-4):327–339. doi: 10.1016/0378-1135(90)90181-t. [DOI] [PubMed] [Google Scholar]
  22. Rosen B. I., Saif L. J., Jackwood D. J., Gorziglia M. Serotypic differentiation of group A rotaviruses with porcine rotavirus gene 9 probes. J Clin Microbiol. 1990 Nov;28(11):2526–2533. doi: 10.1128/jcm.28.11.2526-2533.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Ruiz A. M., López I. V., López S., Espejo R. T., Arias C. F. Molecular and antigenic characterization of porcine rotavirus YM, a possible new rotavirus serotype. J Virol. 1988 Nov;62(11):4331–4336. doi: 10.1128/jvi.62.11.4331-4336.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Theil K. W., Bohl E. H., Agnes A. G. Cell culture propagation of porcine rotavirus (reovirus-like agent). Am J Vet Res. 1977 Nov;38(11):1765–1768. [PubMed] [Google Scholar]
  25. Welter M. W., Welter C. J. Evaluation of killed and modified live porcine rotavirus vaccines in cesarean derived colostrum deprived pigs. Vet Microbiol. 1990 Apr;22(2-3):179–186. doi: 10.1016/0378-1135(90)90105-5. [DOI] [PubMed] [Google Scholar]

Articles from Journal of Clinical Microbiology are provided here courtesy of American Society for Microbiology (ASM)

RESOURCES