Summary
The Notch signaling pathway plays a central role in animal growth and patterning, and its deregulation leads to many human diseases, including cancer [1, 2]. Mutations in the tumor suppressor lethal giant discs (lgd) induce strong Notch activation and hyperplastic overgrowth of Drosophila imaginal discs [3–5]. However, the gene that encodes lgd and its function in the Notch pathway have not yet been identified. Here we report that Lgd is a novel, conserved C2 domain protein that regulates Notch receptor trafficking. Notch accumulates on early endosomes in lgd mutant cells and signals in a ligand-independent manner. This phenotype is similar to that seen when cells lose endosomal pathway components such as Erupted and Vps25 [6–9]. Interestingly, Notch activation in lgd mutant cells requires the early endosomal component Hrs, indicating that Hrs is epistatic to Lgd. Our data indicate that Lgd affects Notch trafficking between the actions of Hrs and the late endosomal component Vps25. Taken together, our data identify Lgd as a novel tumor suppressor protein that regulates Notch signaling by targeting Notch for degradation or recycling.
Results
Lgd is a novel cytoplasmic C2 domain protein
To enable molecular analysis of Lethal giant discs (Lgd) function, we identified the lgd gene by P-element recombination mapping (Fig. S1A) [10]. We found mutations in the coding region of CG4713 in all known lgd alleles, and a genomic rescue construct containing the entire genomic region of CG4713 (Fig. S1B) was sufficient to rescue the lethality of lgd mutations. Therefore CG4713 is lgd.
lgd encodes a novel 816 amino acid protein (Fig. 1A and Fig. S1C). Lgd is conserved in vertebrates, which have two homologs of Lgd that we call HsLgd1 and HsLgd2. The two human homologs are also known as CC2D1B and CC2D1A, respectively. A recent study by Basel-Vanagaite et al. indicated that mutations in HsLgd2 caused non-syndromic mental retardation [11], suggesting an important role for the Lgd homologs in vertebrates.
The proteins in the Lgd family share a conserved C2 domain and three Lgd homology (LH) domains (Fig. 1A and Fig. S1C). The LH domain is not found in any other protein family, and its function is unknown. C2 domains are known as calcium and lipid binding domains, and they are thought to have many functions such as protein-protein interaction, membrane recruitment, protein localization, and trafficking [12, 13].
The lgdd7 and lgd1 alleles have frameshift mutations, resulting in premature stop codons in the N-terminal half of the protein, such that both alleles have all of the conserved domains of the protein deleted (see Fig. 1A legend). We also performed an EMS mutagenesis screen to find new alleles of lgd. We found an allele, lgdJ12, containing a point mutation that creates a stop codon immediately before the C2 domain of the protein (Fig. 1A). This allele has an equivalent phenotype to that of the lgdd7 and lgd1 alleles, signifying the importance of the C2 domain for the function of Lgd.
We generated antibodies against the Lgd protein and used them to analyze Lgd expression and subcellular localization. We found that α–Lgd specifically detects Lgd protein on western blots, in S2 cells, and in imaginal discs (Fig 1B–E). Lgd was present endogenously in S2 and KC cells and localized in the cytoplasm (Fig. 1D–D′). Antibodies pre-incubated with Lgd antigen did not give specific staining, indicating that the antibodies specifically recognized Lgd protein (Fig. 1E). Lgd was expressed ubiquitously in imaginal discs where it also localized in the cytoplasm (Fig. S2B′ and data not shown). We also expressed an HA-tagged version of the Lgd protein in imaginal discs, and it showed the same localization as the anti-Lgd antibodies (Fig. S2). Neither α–Lgd nor HA-tagged Lgd appeared to specifically colocalize with common organelle markers such as Hrs, an early endosomal protein (Fig. 1F–F″). All together, these data indicate a cytoplasmic localization of Lgd.
Lgd acts cell autonomously to restrict Notch activation to target cells
To further understand the function of Lgd, we focused on the phenotype in the developing wing. Notch activation along the dorsal-ventral boundary specifies margin cell fates and induces the expression of target genes such as wingless (wg) and Cut along the margin (Fig. S3D) [14–16]. Ectopic activation of Notch away from the margin induces neighboring blade tissue to grow and form extra wing tissue [17]. In lgd mutant wing discs, Notch target gene expression is expanded: the expression of E(spl) m8-LacZ (a reporter of Notch signaling [18]) extended into the entire wing pouch (Fig. S3A–C), and the expression of Cut extended into most of the wing pouch (Fig. S3D–E). The deregulation of Notch target genes eventually leads to massively overgrown imaginal discs in lgd mutants (Fig. S3A–C and [3–5]).
To determine whether Lgd was required to regulate Notch activity in the signal-sending cell or the signal-receiving cell, we generated clones of lgd mutant cells using the Flipase (FLP) - FRT system [19] and examined whether or not Notch activation was cell autonomous. We used Cut expression as a readout for Notch activation because Cut is cell-autonomously induced by high levels of Notch signaling [20, 21]. We found that only lgd mutant cells (marked by the lack of GFP expression in Fig. 2A) ectopically upregulated Notch signaling as measured by the induction of Cut expression (Fig. 2A–A′). Ectopic Cut expression did not extend into the wild-type or lgd+/− cells outside of the lgd mutant clones (Fig. 2A–A′), as we would expect if Lgd acted in signaling cells to suppress ligand function. In addition, Lgd does not act non-autonomously by repressing Notch activation on adjacent cells because mutant cells immediately adjacent to the clonal boundary expressed ectopic Cut in the region around the wing margin (Fig. 2A). We conclude that Lgd acts cell autonomously to regulate Notch signaling in the cell in which Notch is activated.
Lgd is not required for cis-inhibition
It was previously suggested that cis-inhibition is disrupted in lgd mutant cells [5]. ‘Cis-inhibition’ is the term used to describe the phenomenon where the ligands Serrate and Delta cell-autonomously suppress activation of Notch in a cell that would otherwise show activated Notch signaling [21–23]. For example, overexpression of the Notch ligand Serrate in wild-type wing disc cells caused Cut suppression in the cells that expressed high levels of Serrate [24] (See supplementary information, Fig. S3D and Fig. S3F–F′). In lgd mutant wing discs, we found that expression of Serrate could still suppress Notch activation cell-autonomously (Fig. S3G–G′). This result suggests that Lgd is not required for cis-inhibition. In addition, we found that binding between Notch and Delta was not affected by either lgd RNAi or the overexpression of Lgd (UAS-Lgd) in Alkaline-Phosphatase (AP) binding assays [25] (See supplementary information, Fig. S4).
Lgd restricts Notch activation in a ligand-independent manner
Notch activation normally requires interaction with ligands on neighboring cells [20, 26]. To determine if the presence of ligands is required for the activation of Notch in the absence of Lgd, we made clones of Dl−, Ser− double mutant cells in lgd mutant discs (Fig. 2C–D′). In contrast to the wild-type situation (Fig. 2B–B′), we found that lgd mutant cells throughout the Dl−, Ser− double mutant clones still displayed active Notch signaling (Fig. 2C–D′). Therefore the ligands were not required for Notch activation in lgd mutant cells. As the receptor and ligands are membrane bound, it is unlikely that the Notch receptor in cells in the center of the clone (~15 cell diameters away from the clone boundary) can be activated by ligands outside the clone. We conclude that Notch signaling can be activated independently of the known ligands Delta and Serrate in lgd mutant wing discs.
Mutations in lgd cause disruptions in Notch trafficking
Ligand-independent activation of Notch signaling was recently observed in cell culture studies by knocking down the endosomal ESCRT-II component Vps25 [9]. In imaginal discs, vps25 mutant cells exhibit increased accumulation of Notch on endosomes, resulting in ectopic Notch signaling (Fig. 3D–D′ and [7–9]). Similarly, we found that Notch accumulated in subcellular puncta more frequently in lgd mutant cells than in the surrounding wild-type tissue (Fig. 3A–A′). We observed this result with both Notch intracellular and extracellular domain localization (Fig. 3A and Fig. 3B). These puncta often costained with the early endosomal marker Hrs (Hepatocyte growth factor-regulated substrate) [27, 28] (Fig. 3A‴), indicating that Notch accumulates on early endosomes in lgd mutant cells. Hrs is required for maturation of endosomes into multivesicular bodies [27, 28]. Similarly to the loss of Lgd, the loss of Hrs also leads to accumulation of Notch in subcellular puncta. (Fig. 3E–E′ and [7, 29]). All together, our data indicate that Notch trafficking is altered in lgd mutant cells such that Notch accumulates in Hrs-positive early endosomes.
Hrs is required for Notch activation in lgd mutant cells
In the current model of endocytosis trafficking, Hrs acts upstream of Vps25 [30]. Accordingly, Hrs protein accumulated in vps25 mutant cells (Fig. 3C–C′) [7]. We found that, like Hrs, Lgd protein also accumulated in subcellular puncta and elsewhere in vps25 mutant cells (Fig. 3D″), indicating that Lgd may also act upstream of Vps25. In hrs mutant cells, we found no change in Lgd protein levels or localization (Fig. 3E–E′). However, Hrs protein accumulated in lgd mutant cells, suggesting that Lgd could possibly act downstream of Hrs (Fig. 3A″).
If Lgd acts downstream of Hrs, then the function of Hrs may be required for the transport of Notch to the place in the endosomal pathway in which it can ectopically signal in lgd mutant cells. To test this, we compared the levels of Notch activation, as assayed by Cut induction, between hrs, lgd double mutant clones to each of the single mutant clones. hrs mutant clones did not induce ectopic Cut expression (Fig. 4B–B′). In lgd mutant clones, Cut was ectopically induced (Fig. 4A–A′). In contrast to lgd single mutant clones, hrs, lgd double mutant clones did not show ectopic Notch activation (Fig. 4C–C′). Therefore the induction of Cut in lgd mutant cells requires the function of Hrs. Taken together, our results suggest that Hrs is epistatic to Lgd.
Discussion
In this report, we have identified Lgd as a novel C2 domain protein, and our results indicate that it acts by regulating Notch trafficking. We propose a model in which Lgd functions as a negative regulator of Notch through endosomal sorting of Notch downstream of Hrs function. The loss of Lgd resulted in the accumulation of Notch in early endosomes, and our results suggest that this triggered a signaling event that was distinct from normal activation of Notch signaling. Our data indicate that Notch can be activated in a ligand-independent manner in lgd mutant cells (Fig. 2C–D′). Additionally, cells that lack both Hrs and Lgd did not display ectopically activated Notch signaling as measured by Cut expression (Fig. 4C–C′). However, doubly mutant cells at the wing margin were still able to express margin-specific genes. Therefore Hrs is not required for normal (ligand-dependent) Notch signaling, but it is required for the ectopic activation of Cut expression found in lgd mutant cells.
lgd mutant cells display both similarities and differences compared with cells that are mutant for vps25, a known endosomal trafficking component. Both mutations induce ectopic Notch signaling resulting in tissue overgrowth, and both mutations alter Notch trafficking. However, lgd mutant cells induce higher levels of Notch signaling than do vps25 mutant cells (Cut was not notably ectopically activated in vps25 mutant cells- Fig 4D–D′), do not induce apoptosis, and can survive into adulthood. Also unlike vps25 mutants, lgd mutant cells have no significant defects in cell polarity and do not accumulate increased levels of ubiquitylated proteins (data not shown). It is thought that Vps25 is an endosomal component used to sort many different molecules, whereas Lgd might act specifically in the Notch pathway [5]. We therefore propose a model where Lgd function is required to target full length Notch for endosomal degradation or recycling. It is likely that the removal of Lgd function leaves Notch in an optimal position or modification state for γ-secretase cleavage. The molecular mechanism by which Lgd affects Notch trafficking is currently not known, as we have found no evidence of direct binding between Notch and Lgd by immunoprecipitation.
It is important to note that the subcellular location of the γ-secretase complex cleavage of Notch (S3 cleavage) remains controversial. The traditional view is that the cleavage of Notch occurs at the plasma membrane [31]. However, this view conflicts with the evidence that endocytosis is required for Notch signaling in Drosophila [32]. When protein internalization is blocked by shibire mutations, Notch signaling is eliminated [32]. A different view of the location of Notch S3 cleavage was recently developed when the γ-secretase enzyme Presenilin was shown to have a low optimal pH, suggesting that it could be active in the acidic endocytic compartments [33, 34]. It is possible that differentially processed Notch could be activated in separate cellular compartments. In accordance with the model proposed by Hori et al. [35], Notch activation in the ligand-dependent canonical pathway may occur at the plasma membrane or in endocytic vesicles, whereas Lgd-regulated activation of Notch may occur later, at Hrs-positive endosomes.
Supplementary Material
Acknowledgments
We apologize to the authors of the papers that could not be acknowledged due to space constraints. We thank N. Baker, H. Bellen, A. Bergmann, K. Choi, S. Cohen, C. Delidakis, P. R. Hiesinger, K. Irvine, H. Jafar-Nejad, Y. N. Jan, G. Mardon, A. Martinez-Arias, I. Mellman, M. Milan, D. Ready, K. Schulze, E. Seto, A. Singh, G. Struhl, P. Verstreken, M. Young, the Developmental Studies Hybridoma Bank, University of Iowa and the Bloomington Drosophila Stock Center, Indiana for fly stocks and reagents. We also thank A. Bergmann, H. M. Herz, P.R. Hiesinger, R. Johnson, R. Kopan, J. Qin, B. Su, and members of the Halder lab for disscusion. We thank Leisa McCord for assistance with graphics and Xin Wei Zhang for technical assistance. J.L.C. was supported by National Institutes of Health Training Grant 5 T32-HD07325. This work was supported in part by an NIH grant to G.H. and research grant number 1-FY05-106 from the March of Dimes birth defects foundation to G.H.
Footnotes
Competing Interests statement The authors declare that they have no competing financial interests.
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