Abstract
Peroxisome proliferator activated receptor (PPAR) γ coactivator-1α (PGC-1α) may be implicated in cholesterol metabolism since PGC-1α co-activates estrogen receptor α (ERα) transactivity and estrogen/ERα induces the transcription of LDL receptor (LDLR). Here, we show that overexpression of PGC-1α in HepG2 cells represses the gene expression of LDLR and does not affect the ERα-induced LDLR expression. PGC-1α suppressed the LDLR promoter-luciferase (pLR1563-luc) activity regardless of cholesterol or functional sterol-regulatory element-1. Serial deletions of the LDLR promoter revealed that the inhibition by PGC-1α required the LDLR promoter regions between -650 bp and -974 bp. Phosphorylation of PGC-1α may not affect the suppression of LDLR expression because treatment of SB202190, a p38 MAP kinase inhibitor, did not reverse the LDLR down-regulation by PGC-1α. This may be the first report showing the repressive function of PGC-1α on gene expression. PGC-1α might be a novel modulator of LDLR gene expression in a sterol-independent manner, and implicated in atherogenesis.
Keywords: cholesterol; liver; peroxisome-proliferator-activated receptor-γ coactivator-1; PPARγ; promoter regions, genetic
Introduction
Peroxisome proliferator activated receptor gamma coactivator-1α (PGC-1α) is an emerging co-activator, which plays a role in regulation of adaptive thermogenesis, cellular respiration, and energy metabolism (Wu et al., 1999; Herzig et al., 2001; Rhee et al., 2003). Recent studies demonstrated that PGC-1α might be one of central regulators in transcription of various genes involved in glucose (Yoon et al., 2001; Rhee et al., 2003) or lipid (Barbera et al., 2001; Louet et al., 2002) metabolism. Overexpression of PGC-1α increases the biogenesis of mitochondria and energy expenditure program of cells. PGC-1α is induced in fasted or diabetic liver and activates the expression of key gluconeogenic enzymes such as phosphoenolpyruvate carboxykinase (PEPCK) and glucose-6-phosphatase (G6Pase) (Yoon et al., 2001). Interestingly, PGC-1α is elevated in pancreatic islets of animal models of type 2 diabetes and negatively regulates insulin secretion. Based on this observation, Yoon et al. (2003) suggested that PGC-1α might play a key role in the pathogenesis of the diabetic phenotype. PGC-1α also induces the expression of liver carnitine palmitoyltransferase I (L-CPT I) (Louet et al., 2002), which catalyzes the transfer of long-chain fatty acids into mitochondria and is considered the rate-controlling enzyme in fatty acid oxidation.
It is possible for PGC-1α to be involved in cholesterol metabolism. Two reports demonstrated that the transcription of CYP7A1 encoding cholesterol 7α-hydroxylase, the rate limiting enzyme of bile acid biosynthesis from hepatic cholesterol, was activated by PGC-1α in cooperation with other transcription factors such as hepatocyte nuclear factor-4α (HNF-4α) and chicken ovary upstream promoter-transcription factor II (COUP-TFII) (De Fabiani et al., 2003; Shin et al., 2003). To achieve a fine control of cholesterol homeostasis, the sterol responsive genes involved in cholesterol biosynthesis (HMG-CoA reductase), uptake (low density lipoprotein receptor, LDLR) and catabolism (CYP7A1) are coordinately regulated. In addition, PGC-1α is a co-activator of ERα on estrogen responsive element (ERE)-driven transactivity through direct protein-protein interaction (Tcherepanova et al., 2000). Since it is well known that treatment of estrogen in vivo or the activation of estrogen receptor-α (ERα) in vitro up-regulates LDLR gene expression at transcriptional level (Cooper et al., 1987; Distefano et al., 2002), we purport the hypothesis that PGC-1α may modulate the LDLR gene expression.
Sterol regulation of the LDLR promoter requires the concerted action of two proteins: the sterol-regulated SREBP and the generic co-regulator Sp1. The binding sites for SREBP and Sp1 are present on the proximal region (within +58 ~ -234bp) of LDLR promoter. Cholesterol deficiency cleaves SREBP residing in endoplasmic reticulum, and the truncated SREBP increases the DNA binding of Sp1 to the LDLR promoter (Yieh et al., 1995; Xiong et al., 2000). Estrogen, a beneficial hormone for cardiovascular diseases, binds to ERα to upregulate LDLR transcription. However, ERα does not seem to activate LDLR by direct binding to LDLR promoter because it does not contain any consensus or near-consensus estrogen response element (ERE). Instead, it was suggested that the LDLR promoter region near SRE-1 was responsible for the estrogen effects (Croston et al., 1997), indicating that ERα may activate the promoter indirectly, through transcriptional activation of SREBP or other factor(s) that regulate LDLR expression (Distefano et al., 2002; Bruning et al., 2003).
In this study, we investigated whether overexpression of PGC-1α regulated the LDLR promoter-driven transactivity in the relation with ER-α or SREBP using the LDLR promoter-luciferase (pLDLR1563-luc) reporter constructs. We demonstrated that PGC-1α did not co-activate the ER-α-mediated LDLR transcription, but repressed the transcriptional activity of LDLR promoter. The inhibitory mechanism of PGC-1α was independent of cholesterol and SRE-1. Furthermore, the serial deletion of LDLR promoter revealed that the distal LDLR promoter region between -650bp and -974bp was responsible for the PGC-1α-mediated inhibition. This promoter region contains a putative three E-box (CANNTG) and a TRE (AAAGGCGG) sequences. To our knowledge, this is the first report showing that PGC-1α is a negative regulator in LDLR gene expression and may play a role in atherogenesis.
Results
Ectopic expression of PGC-1α decreases the endogenous LDLR mRNA
To examine directly the ability of PGC-1α to regulate LDLR, we have utilized adenoviral vectors to express the PGC-1α protein in HepG2 cells. The cells grown in media containing 10% FBS were infected at a moi of 50 with AdLacZ or AdPGC-1. Forty-eight hours after infection, total RNA was extracted from the cells and RT-PCR and Northern blot were performed to detect mRNA for PGC-1α, LDLR or β-actin. As shown in Figure 1, PGC-1α mRNA was approximately 10-fold increased in the cells infected with AdPGC-1 compared to those with AdLacZ alone. However, the level of LDLR mRNA was 60% decreased in the PGC-1α-over-expressing cells, while the β-actin mRNA remained unchanged. The increase of PGC-1α mRNA was verified with the up-regulation of PGC-1α proteins.
PGC-1α represses LDLR promoter-dependent transcription in an estrogen-independent manner
PGC-1α works as a transcriptional co-activator of several nuclear receptors, such as ERα (Tcherepanova et al., 2000), PPARs (Puigserver et al., 1998), and retinoid X receptor (Delerive et al., 2002). In order to check whether the cloned full-length PGC-1α, which contains 35 extra amino acids at N-terminus, enhances the estradiol-dependent transactivity of ERα as reported, we performed transient co-transfection assay with mammalian expression vectors of ERα and PGC-1α and pERE(3×)-luciferase in HepG2 cells. As expected, ERα or PGC-1α alone activates the reporter activity (Figure 2A). When PGC-1α and ERα were co-expressed, the ERE-dependent transcriptional activity was synergistically elevated. ERα activity was increased depending on the presence of estradiol.
However overexpression of PGC-1α inhibited the transcriptional activity of pLR1563-luc, a luciferase reporter bearing LDLR promoter region from +58 to -1563bp, up to 80% whereas ERα activated pLR1563-luc in the presence of estradiol (Figure 2B). Suppression of the transcriptional activity by PGC-1α remained unchanged by adding estradiol to the cells. Co-expression of ERα reversed the PGC-1α-mediated inhibition but there was no synergistic activation of LDLR promoter activity. The results suggested that despite the LDLR transcription was induced by estrogen or ERα overexpression, PGC-1α might not play any role as a co-regulator in the ERα-mediated LDLR activation.
Repression of LDLR promoter by PGC-1α is sterol-independent
Serum depletion or lipoprotein deficiency strongly induces the LDLR expression in cultured HepG2 cells (Pak et al., 1996). To examine if PGC-1α-mediated inhibition of LDLR promoter activity would be altered depending on the presence of serum factor(s) or cholesterol, the effects of PGC-1α overexpression were determined in HepG2 cells cultured in media containing 10% FBS, 0% FBS (serum-free), or 10% LPDS. As shown in Figure 3A, neither of culture conditions abolished the PGC-1α-induced LDLR inhibition. Serum depletion or LPDS, which was a signal for SREBP activation, recovered LDLR transcription as compared to that of 10% FBS. When 25-hydroxycholesterol, a turn-off signal for LDLR expression, was added in HepG2, the LDLR promoter activity was too low to measure the inhibitory effect of PGC-1α (data not shown). The data presented that the repression of LDLR promoter activity by PGC-1α might be independent of the cholesterol availability and provided another line of evidence that non-sterol factor(s) could regulate LDLR promoter activity.
SRE-1 is not necessary for the inhibitory effect of PGC-1α
The proximal region of LDLR promoter contains SRE-1 element that is essential for sterol-dependent regulation of LDLR. SREBP binds to SRE-1 to enhance the transcription of LDLR in response to deficiency of cholesterol. Although many factors other than cholesterol also regulate LDLR expression, the proximal region (below -234bp) including SRE-1 has been a major player to control the LDLR expression. We have previously shown that the distal region of LDLR promoter may be involved in hepatocyte growth factor- or serum factor-induced upregulation of LDLR (Pak et al., 1996), but any trans-acting factor(s) or cis-acting element(s) for repression of LDLR expression have not been elucidated. Here, we studied whether SRE-1 was required for repression of LDLR transcription by PGC-1α. We constructed two mutants of LDLR promoter-luciferase reporter; dSRE-luc that lacks SRE-1 and mSRE-luc of which SRE-1 region was substituted for scrambled sequences to maintain the length of promoter. The basal promoter activities of both mutant constructs were only 20% of the wild type pLR1563-luc (WT). But the transcriptional activities of all three LDLR promoters were inhibited by overexpression of PGC-1α (Figure 4). These results clearly confirmed that SRE-1 or SREBP was not necessary for suppression of LDLR expression by PGC-1α, and suggested that PGC-1α might not affect the complex formation of SREBP and Sp1.
PGC-1α required the LDLR promoter region between -650bp and -974bp for inhibition of LDLR transcription
We constructed the LDLR promoter-luciferase construct series (pLR1326, pLR974, pLR650, and pLR234) by sequential deletion to verify which LDLR promoter region was responsible for repression by PGC-1α co-expression. As shown in Figure 5, PGC-1α co-expression repressed luciferase activity of pLR1326 and pLR974 as same as pLR1563, while it did not repress the activity of pLR650 and pLR234. The result suggested that the LDLR promoter region between -650bp and -974bp was required for the PGC-1α-mediated repression of LDLR transcription. In addition, the known cis-acting elements of SRE-1 and Sp1 binding sites were not involved in the LDLR repression.
Dominant positive of SREBP-2 overrules the inhibitory effect of PGC-1α
Next, we explored the influence of dominant positive of SREBP-2 (N-SREBP-2, N-terminus of SREBP-2) on the inhibitory effect of PGC-1α. Addition of N-SREBP-2 on top of the PGC-1α overrode the repressive effect by PGC-1α on LDLR transcription to the level of N-SREBP-2 alone (Figure 6A). Interestingly, a dose-dependent reactivation was not observed but small amount (200ng) of N-SREBP-2 could completely reverse the repression by 800ng PGC-1α and further maintained the LDLR promoter activity. Enhancement of LDLR transcription by N-SREBP-2 was 4 times stronger than the repression by PGC-1α in respect to molecular ratio. This result implies again that the LDLR repression by PGC-1α may exert separately from the SREBP-mediated LDLR induction. It was concluded that PGC-1α might be a novel sterol-independent modulator of LDLR regulation although its repressive function was mild compared to cholesterol itself.
PPARγ activation had no effect on PGC-1α-repressed transcription
PGC-1α co-activates the PPARγ activity. Activation of PPARγ by its ligand, such as troglitazone (TZD) or by overexpression may increase the activity of PGC-1α. However, the TZD treatment or PPARγ overexpression did not alter the repression of LDLR promoter activity by PGC-1α (Figure 6B). It was concluded that PGC-1α might function on LDLR promoter regardless of PPARγ activity.
PGC-1α still repressed the LDLR expression in the presence of p38-MAPK inhibitor
Knutti et al.(2001) reported that phosphorylation of PGC-1α by p38-MAPK might favor the release of the unidentified repressor, thereby enhancing the PGC-1α activity as a co-activator of glucocorticoid receptor. On the other hand, activation of p38-MAPK negatively regulated LDLR expression (Singh et al., 1999). In order to test the effect of p38-MAPK-mediated phosphorylation of PGC-1α on LDLR expression, HepG2 cells with or without PGC-1α overexpression were treated with a specific p38-MAPK inhibitor SB202190 (20 µM) in serum free media and effects on LDLR mRNA levels were assayed by RT-PCR and Northern blotting. Over-expression of PGC-1α represses the LDLR expression in the absence of SB202190, which is in agreement with the results shown in Figure 1. Inactivation of p38-MAPK by SB202190, which was reported to prevent phosphorylation of PGC-1α, induces the mRNA level of LDLR as reported (Figure 7). However, the treatment of SB202190 did not reverse the repression of LDLR expression by overexpression of PGC-1α. The result implies that the repressive activity of PGC-1α on LDLR promoter may be independent of p38-MAPK-mediated phosphorylation. Furthermore, it is possible that PGC-1α suppress the same signaling pathway of LDLR induction as those activated by p38-MAPK inactivation. It also suggests that the PGC-1α-repressed mechanisms and signals on LDLR expression may be different from those of other nuclear receptor-mediated transcription co-activation.
Three E-box and TRE consensus sequences are present between -974 and -681 bp region of LDLR promoter
Since the region between -974 and -681bp was responsible for the PGC-1α-mediated suppression of LDLR transcription, we searched for potential consensus sequences of transcription factors in the region to investigate the potential candidate repressor(s). Interestingly, one AP1 binding (TRE) and three E-box (CANNTG) sites were present between -974 and -681bp (Figure 8A). We assumed that the basic helix-loop-helix (bHLH) family of E-box binding proteins contain a group of transcription factors that includes fos-related antigen 2 (Fra-2) (Yang et al., 2002), Hairy Enhancer of Split (HES-1), DEC1 and CLOCK (Herzig et al., 2003). In gene profiling assay, none of these protein expressions were altered in AdPGC-1α-infected HepG2 cells relative to control (data not shown).
On the other hand, chromatin immunoprecipitation (ChIP) assay demonstrated that PGC-1α weakly interacted with LDLR distal promoter and this direct binding was abolished in AdPGC-1 infected cells (Figure 8B). The results imply that binding affinity of the unknown E-box or TRE binding protein to the promoter region may be decreased by PGC-1α overexpression (a putative scheme in Figure 8C). An intensive further study might be necessary to identify unknown factor(s) which might interact with E-box or form an AP1 transcription complex to induce the LDLR expression and dissociate from the promoter DNA after interaction with PGC-1α.
Discussion
In this work, we provide clear evidences for a repressive role of PGC-1α on LDLR gene expression using co-transfection and LDLR promoter reporter assay. Overexpression of PGC-1α was sufficient to suppress the levels of LDLR mRNA and LDLR promoter activity in HepG2 cells. The distal region of LDLR promoter between -974bp and -650bp was responsible for the gene suppression by PGC-1α. PGC-1α decreased the LDLR promoter binding affinity of Fra-2 which might bind to E-box of LDLR distal promoter. The mechanism of PGC-1α-mediated repression of LDLR expression seems to be separated from those of the known SREBP-dependent feedback regulation or the ERE/ERα-dependent stimulation.
The regulation of LDLR transcription by sterols has been extensively delineated (Hua et al., 1993; Wang et al., 1993, 1994). Lack of intracellular cholesterol signals to cleave high molecular weight SREBP on endoplasmic reticulum and let the cleaved N-SREBP move into nuclei to activate LDLR transcription. In contrast, abundance of intracellular cholesterol does not increase the levels of nuclear N-SREBP, and consequently turns off the LDLR transcription. Although SREBP is a dominant regulator for LDLR transcription, non-sterol factors such as hormones (Rudling et al., 1996), growth factors (Mazzone et al., 1990; Pak et al., 1996) and cytokines (Stopeck et al., 1993) are also suggested to control the LDLR expression. It is not yet clear whether the non-sterol regulators activate any other unidentified factor(s) or interact with SREBP to modulate the LDLR expression.
Signals to activate gene transcription can be in general transduced to three transcription regulators; transcription factors, basic transcription machinery such as RNA polymerase, and co-regulators. For LDLR regulation, not many cis-acting element(s) or trans-acting factor(s) except SRE-1 and SREBP have been identified. For example, Yin Yang 1 protein was reported to disrupt the complex of Sp1 and SREBP on LDLR promoter, resulting in reduction of LDLR transcription (Bennett et al., 1999). A promoter region near TATA box was identified as a cis-element for oncostatin M-induced, sterol-independent activation of LDLR (Liu et al., 2000). Another proximal promoter region between -234bp and -214bp was necessary for induction of LDLR transcription by a short term (2h) treatment of phorbol ester (Makar et al., 2000). It is interesting to note that most of the reported LDLR transcription regulators function at or near SRE-1, the proximal promoter, of LDLR. In this study, however, the cis-element (E-box) responsible for PGC-1α-inhibited LDLR expression is located in the distal region of LDLR promoter and does not require the presence of SREBP, which suggests that putative transcription regulatory factor(s) may bind to the cis-element in the distal region of LDLR promoter.
Various co-activators such as SHP-1, RIP140 and DAX-1 have shown to interact with the ligand-binding domain of ERα that is activated by estrogen. However, the role of co-activators in ERα-mediated activation remains not understood. Basically, the co-activators interact with ligand-bound nuclear receptors and components of basal transcription machinery to activate target genes. PGC-1α also recruits several transcription factors to activate the gene transcription, which are involved in gluconeogenesis (Yoon et al., 2001; Rhee et al., 2003) and fatty acid metabolism (Louet et al., 2002) as well as ERα-mediated gene transcription (Tcherepanova et al., 2000). Therefore, we hypothesized at first that PGC-1α would up-regulate the LDLR gene expression through direct protein-protein interaction with ERα. Unexpectedly, however, PGC-1α did not co-activate ERα-induced LDLR transcription and repressed the LDLR transcription by itself. Our results suggested PGC-1α might play a novel repressive role in regulation of LDLR expression. As PGC-1α is a co-regulator which lacks the DNA-binding domain (Puigserver et al., 1999), there are two possible ways in which PGC-1α represses the transcription; i) PGC-1α enhances the activity of putative DNA-binding repressor(s) or ii) PGC-1α inactivates the putative transcription activator. If there is a putative silencing factor, PGC-1α would enhance the association of the silencing factor with the LDLR promoter to reduce the transcription. Or a transcription activator is involved; PGC-1α may deplete the putative transcription factor not to interact with LDLR promoter. To change the protein-protein interaction or the activity of the factors like the above, protein modification would be one of the plausible ways.
Knutti et al. (2001) provided some evidence for a putative repressor that interacts with and regulates PGC-1α. They showed that the phosphorylated PGC-1α by p38-MAPK lost the binding affinity with the repressor and enhanced the glucocorticoid hormone response. It was suggested that the repressor and nuclear receptors competed for recruiting PGC-1α to an inactive and active state, respectively, since the repressor and nuclear receptors might recognize overlapping sites of PGC-1α. But the mechanism of PGC-1α in LDLR repression is very different from the glucocorticoid hormone response. A specific inhibitor for p38-MAPK did not reverse the PGC-1α activity on LDLR expression, that is, the LDLR gene expression remained suppressed in the presence of p38-MAPK inhibitor. Therefore, the phosphorylation status of PGC-1α might not alter the association between the putative regulatory factor(s) and PGC-1α. The LDLR promoter region interacting with the putative factor(s) should be between -974 bp to -650bp. PPARα is one of the candidate transcription regulators working with PGC-1α. The results, however, demonstrated the PGC-1α activity on LDLR expression was independent of PPARα, which was expected as the PPARα response element is not present in the LDLR promoter region.
Screening of the consensus sequences for transcription factor binding in LDLR distal promoter between -974 bp to -650bp revealed that three E-box sequences might be involved in PGC-1α-induced suppression. None of putative E-box binding repressor proteins were involved in the suppression (data not shown). We suspect unknown factor(s) which exhibit affinity to TRE as transcription activators since we observed pLR1563-luc was induced greatly by AP1 complex (unpublished data). The subunit of the complex needs to be identified in detail.
In animal models, hepatic PGC-1α levels were increased in fasting status and diabetes, a pathological fasting status. Without increase of serum cholesterol it is possible that fasting or diabetic condition increases hepatic PGC-1α, resulting in decrease of LDLR expression and decrease of serum cholesterol clearance. Therefore, fasting condition may lead to increase of serum cholesterol. This postulate is well agreed with the observation showing that acute fasting increases serum cholesterol and LDL in healthy and non-obese human subjects (Savendahl and Underwood, 1999).
Methods
Materials
TRIzol and tissue culture supplies were purchased from GIBCO-BRL Co. Lipoprotein deficient serum (LPDS) fraction of FBS (d > 1.21 g/ml) was isolated by ultacentrifugation in KBr as previously described (Han and Pak, 1999). The enhanced chemiluminescence (ECL) detection kit was obtained from Amersham-Pharmacia Biotech. The mammalian expression plasmids of pcDNA3.1/HisC, pcDNA3.1/LacZ, and T-easy vector were purchased from Invitrogen and Promega, respectively. 17β-ethinyl estradiol (E2) and 25-hydroxycholesterol were purchased from Sigma Co, St. Louis. The inhibitor of p38-MAPK, SB202190 was purchased from CalBiochem.
Cell culture and transient transfection
HepG2 cells (ATCC, HB-8085) were cultured in Minimum Essential Medium (MEM) supplemented with 10% FBS and 100 µg/ml penicillin and 100 µg/ml streptomycin at 37℃/5% CO2. For transient transfections, the cells (4 × 105 cells/well) in 6 well plate were transfected with the indicated plasmid(s) and expression vector of β-galactosidase (pcDNA3.1/LacZ) by calcium phosphate co-precipitation method (Han et al., 2000; Kim et al., 2001). The total amounts of expression vectors were kept constant by adding pcDNA3.1/HisC expression vector to transfection. After 24 h incubation in MEM with or without 10% FBS or LPDS, the cells were harvested and luciferase activity was measured using luciferase assay kit (Promega, Madison, WI) and luminometer (Berthold, German). The transfection efficiencies were normalized by the β-galactosidase activity. In some experiments, the transfected cells were incubated for 24 h in phenol red-free MEM supplemented with 10% charcoal dextran-treated FBS (Horwitz and McGuire, 1978) in the presence of vehicle (ethanol) or 17β-ethinyl estradiol (10-8 M) and harvested for luciferase assay.
Preparation of plasmids
A HindIII fragment (1563bp) of human LDLR promoter from pLDLR-CAT 1563 (Pak et al., 1996) was subcloned into HindIII site of pGL2-Basic vector (Promega), and named as pLR1563-luc. The serially truncated LDLR promoter-reporter vectors, pLR1326-luc, pLR974-luc, pLR650-luc, and pLR234-luc were also constructed by PCR as described previously (Oh et al., 2005). Vectors containing LDLR promoter mutants were generated using oligonucleotide-directed mutagenesis. A deletion mutant (dSRE-luc) that lacks the SRE-1 region, and a scrambled mutant (mSRE-luc) that SRE-1 sequences were randomly scrambled, were generated using a two-step PCR procedure. The full-length cDNA of human PGC-1α was cloned by RT-PCR as previously described (Choi et al., 2006). All products from PCR-based cloning were sequenced to ensure the fidelity of the resulting constructs. The expression vector of human N-terminus of SREBP-2 was a kind gift from Dr. Kyung-Sup Kim (Yonsei University, Korea). Dr. Mi-Ock Lee (Seoul National University, Korea) kindly provided us the pERE-luc, a luciferase reporter containing three copies of a canonical estrogen response element (ERE) under a TATA promoter, and pSV40-ERα expression vector.
Adenovirus infection
HepG2 cells were infected for 48 h with adenoviruses expressing either LacZ (AdLacZ) (Chung et al., 2002) or PGC-1α with (His)6-tag at its N-terminus (AdPGC-1) at a multiplicity of infection (moi) of 50 (Rhee et al., 2003) and harvested for Western blotting or for RT-PCR analysis. In some cases, the infected cells in serum free media containing 0.5% FBS were treated with the inhibitor of p38-MAPK, SB202190 (20 µM), for 24 h and harvested for RT-PCR or Northern analysis.
Western blot analysis
Protein extracts (20 µg) from HepG2 cells infected with AdLacZ or AdPGC-1 adenovirus were prepared with lysis buffer (10 mM HEPES, pH 7.9, 10 mM KCl, 2 mM MgCl2, 0.5 mM dithiothreitol, 1 mM PMSF, 5 µg/ml aprotinin, 5 µg/ml pepstatin A, 5 µg/ml leupeptin, and 1% Triton X-100), separated by 10% SDS-PAGE, and analyzed by Western blot using rabbit anti-human PGC-1α polyclonal antibodies (Santa Cruz Biotechnology, Santa Cruz, CA) and an enhanced chemiluminescence system (ECL, Amersham Pharmacia Biotech). After detection of PGC-1α, the membrane was stripped and reprobed with anti-actin antibody (Santa Cruz Biotechnology).
RNA isolation and RT-PCR
Total cellular RNA from rat liver or cultured cells was isolated using TRIzol reagent followed by manufacturer's instruction (Invitrogen) (Pak et al., 1996; Jang et al., 2006). Total cDNA synthesized from 2 µg of total RNA was amplified for 28-30 cycles at 94℃ for 30 s, 56℃ for 30 s, and 72℃ for 2 min. The primer sets for LDLR (5'-atgcatctcctacaagtgggt-3' and 5'-agtttccatcagagcactggaa-3'), PGC-1α (5'-atggcgtgggacatgtgcaa-3' and 5'-tccctcagttcaccggtc-3'), β-actin (5'-ttctacaatgagctgcgtgtggct-3' and 5'-gcttctccttaatgtcacgcacga-3') were used for amplification of 629 bp, 1,457bp, and 378bp fragments of human LDLR, PGC-1α, and β-actin, respectively. The reaction products were examined by 1.2% agarose gel electrophoresis and normalized by the RT-PCR products for β-actin (Kim et al., 2001).
Northern blot analysis
Twenty µg of total RNA were separated by gel electrophoresis and transferred to a Nytran membrane (Schleicher & Schuell Inc.) using TurboBlotter (Schleicher & Schuell Inc.). The membrane was hybridized with the 32P-labeled specific cDNA probes for LDLR (629 bp PCR product) and PGC-1α (1,457 bp of PCR product) in Quickhyb hybridization solution (Stratagene) for 12 h at 65℃, washed twice for 15 min at room temperature with a 2 × SSC/0.1%SDS, then washed once for 30 min at 60℃ with 0.1 × SSC/0.1% SDS. The membrane was exposed to K-type imaging screen and visualized using Molecular Imaging System FX (Bio-Rad).
Chromatin immunoprecipitation (ChIP)
HepG2 cells were infected with AdLacZ or AdPGC-1 and ChIP assay was performed (Puigserver et al., 2003). Briefly, cross-linked protein-DNA complex was immunoprecipitated with control IgG, anti-PGC-1α (Santa Cruz Biotechnology, Santa Cruz, CA), or anti-acetylated histone 3 (AcH3) antibodies and the precipitated DNA fragments were analyzed by PCR using primers directed against human LDLR promoter (5'-caggcaagtttctcacatgtgcctttttggcaaga-3' and 5'-agtacagccaaaaaaatattttttgttttg-3').
Statistical analysis
Data are expressed as mean ± SD. Statistical significance was evaluated by paired or unpaired Student's t-test, and P < 0.05 was considered significant.
Acknowledgements
Authors thank Sunny Lim and Junwoo Kim for their excellent technical assistance. This study was supported by FPR08A1-070 of 21C Frontier Functional Proteomics Project from the Ministry of Education, Science and Technology, Korea and intramural grants 20071406 and 20080903 of Kyung Hee University.
Abbreviations
- E2
17β-ethinyl estradiol
- EMSA
electrophoretic mobility shift assay
- ER
estrogen receptor
- ERE
estrogen response element
- LDLR
low density lipoprotein receptor
- moi
multiplicity of infection
- p38-MAPK
p38-mitogen activated protein kinase
- PEPCK
phosphoenolpyruvate carboxykinase
- PGC-1α
PPARγ coactivator-1α
- PPARγ
peroxisome proliferator activated receptor γ
- SRE-1
sterol regulatory element-1
- SREBP
SRE-1 binding protein
- TZD
troglitazone
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