Abstract
In the title compound, C15H12Cl2N2O3·CH3OH, the Schiff base molecule is nearly planar, with a dihedral angle of 4.5 (2)° between the two benzene rings. An intramolecular O—H⋯N hydrogen bond is observed. The methanol solvent molecule is linked to the Schiff base molecule through intermolecular N—H⋯O and O—H⋯O hydrogen bonds.
Related literature
For the synthesis of Schiff base compounds, see: Herrick et al. (2008 ▶); Suresh et al. (2007 ▶); Liu et al. (2007 ▶). For the background on biological activities, see: Bhandari et al. (2008 ▶); Sinha et al. (2008 ▶); Sun et al. (2008 ▶). For related structures, see: Wang et al. (2008 ▶); Tang (2008a
▶,b
▶); Yang & Zheng (2007 ▶).
Experimental
Crystal data
C15H12Cl2N2O3·CH4O
M r = 371.21
Triclinic,
a = 7.742 (3) Å
b = 9.070 (3) Å
c = 12.296 (4) Å
α = 92.422 (5)°
β = 98.948 (5)°
γ = 96.954 (5)°
V = 845.0 (5) Å3
Z = 2
Mo Kα radiation
μ = 0.41 mm−1
T = 298 (2) K
0.27 × 0.23 × 0.20 mm
Data collection
Bruker SMART CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.898, T max = 0.923
6888 measured reflections
3452 independent reflections
2253 reflections with I > 2σ(I)
R int = 0.029
Refinement
R[F 2 > 2σ(F 2)] = 0.051
wR(F 2) = 0.131
S = 1.04
3452 reflections
224 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.27 e Å−3
Δρmin = −0.24 e Å−3
Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801235X/ci2593sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680801235X/ci2593Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N2—H2⋯O4i | 0.899 (10) | 1.997 (12) | 2.881 (3) | 167 (3) |
O4—H4⋯O2 | 0.82 | 2.35 | 2.989 (3) | 135 |
O4—H4⋯O2ii | 0.82 | 2.34 | 3.023 (3) | 141 |
O1—H1⋯N1 | 0.82 | 1.84 | 2.557 (3) | 145 |
Symmetry codes: (i) ; (ii)
.
supplementary crystallographic information
Comment
Schiff base compounds can be easily synthesized from the reaction of aldehydes with primary amines (Herrick et al., 2008; Suresh et al., 2007; Liu et al., 2007). These compounds show interesting biological activities, especially antimicrobial activities (Bhandari et al., 2008; Sinha et al., 2008; Sun et al., 2008). Recently, the crystal structures of a few Schiff base compounds obtained from the derivatives of salicylaldehyde with benzohydrazide have been reported (Wang et al., 2008; Tang, 2008a,b; Yang & Zheng, 2007). We report here the crystal structure of a new Schiff base compound, derived from 3,5-dichlorosalicylaldehyde and 3-methoxybenzohydrazide.
The asymmetric unit consists of a Schiff base molecule and a methanol molecule of crystallization (Fig. 1). The Schiff base molecule is nearly planar, with a maximum deviation of 0.133 (1) Å for atom Cl1. The dihedral angle between the two benzene rings is 4.5 (2)°. An intramolecular O—H···N hydrogen bond is observed in the Schiff base molecule. The methanol molecule of crystallization is linked to the Schiff base molecule through intermolecular N—H···O and O—H···O hydrogen bonds (Table 1 and Fig.2).
Experimental
3,5-Dichlorosalicylaldehyde (0.1 mmol, 19.0 mg) and 3-methoxybenzohydrazide (0.1 mmol, 16.6 mg) were dissolved in methanol (20 ml). The mixture was stirred at room temperature to give a clear yellow solution. Yellow block-shaped crystals were formed after a week.
Refinement
Atom H2 was located in a difference Fourier map and refined isotropically, with the N2—H2 distance restrained to 0.90 (1) Å, and with Uiso(H) set to 0.08 Å2. All other H atoms were constrained to idealized geometries, with C–H = 0.93–0.96 Å, O–H = 0.82 Å, and with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O and methyl C). A rotating group model was used for the methyl and hydroxyl groups.
Figures
Fig. 1.
The molecular structure of the title compound, showing 30% probability displacement ellipsoids. Intramolecular hydrogen bonds are shown as dashed lines.
Fig. 2.
The molecular packing of the title compound, viewed along the a axis. Intermolecular hydrogen bonds are shown as dashed lines. H atoms not involved in the hydrogen bonds have been omitted for clarity.
Crystal data
C15H12Cl2N2O3·CH4O | Z = 2 |
Mr = 371.21 | F000 = 384 |
Triclinic, P1 | Dx = 1.459 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation λ = 0.71073 Å |
a = 7.742 (3) Å | Cell parameters from 1304 reflections |
b = 9.070 (3) Å | θ = 2.4–24.5º |
c = 12.296 (4) Å | µ = 0.41 mm−1 |
α = 92.422 (5)º | T = 298 (2) K |
β = 98.948 (5)º | Block, yellow |
γ = 96.954 (5)º | 0.27 × 0.23 × 0.20 mm |
V = 845.0 (5) Å3 |
Data collection
Bruker SMART CCD area-detector diffractometer | 3452 independent reflections |
Radiation source: fine-focus sealed tube | 2253 reflections with I > 2σ(I) |
Monochromator: graphite | Rint = 0.029 |
T = 298(2) K | θmax = 26.5º |
ω scans | θmin = 1.7º |
Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | h = −9→9 |
Tmin = 0.898, Tmax = 0.923 | k = −11→11 |
6888 measured reflections | l = −15→15 |
Refinement
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.051 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.131 | w = 1/[σ2(Fo2) + (0.0565P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
3452 reflections | Δρmax = 0.27 e Å−3 |
224 parameters | Δρmin = −0.24 e Å−3 |
1 restraint | Extinction correction: none |
Primary atom site location: structure-invariant direct methods |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.29231 (9) | −0.03639 (9) | 0.10217 (6) | 0.0659 (3) | |
Cl2 | −0.37695 (9) | −0.28076 (8) | 0.09465 (6) | 0.0636 (3) | |
O1 | 0.2383 (2) | 0.14041 (19) | 0.29003 (15) | 0.0532 (5) | |
H1 | 0.2219 | 0.1852 | 0.3461 | 0.080* | |
O2 | 0.3328 (2) | 0.3979 (2) | 0.51936 (17) | 0.0729 (6) | |
O3 | −0.0405 (3) | 0.5968 (2) | 0.88407 (15) | 0.0659 (6) | |
O4 | 0.3034 (2) | 0.6965 (2) | 0.42945 (18) | 0.0677 (6) | |
H4 | 0.3679 | 0.6328 | 0.4458 | 0.102* | |
N1 | 0.0576 (3) | 0.2173 (2) | 0.43529 (16) | 0.0432 (5) | |
N2 | 0.0515 (3) | 0.3093 (2) | 0.52560 (17) | 0.0455 (5) | |
C1 | −0.0641 (3) | 0.0367 (3) | 0.2932 (2) | 0.0408 (6) | |
C2 | 0.0927 (3) | 0.0466 (3) | 0.2486 (2) | 0.0406 (6) | |
C3 | 0.0983 (3) | −0.0464 (3) | 0.1565 (2) | 0.0432 (6) | |
C4 | −0.0443 (3) | −0.1470 (3) | 0.1091 (2) | 0.0474 (6) | |
H4A | −0.0375 | −0.2083 | 0.0477 | 0.057* | |
C5 | −0.1966 (3) | −0.1549 (3) | 0.1541 (2) | 0.0448 (6) | |
C6 | −0.2080 (3) | −0.0639 (3) | 0.2446 (2) | 0.0460 (6) | |
H6 | −0.3127 | −0.0699 | 0.2733 | 0.055* | |
C7 | −0.0786 (3) | 0.1315 (3) | 0.3889 (2) | 0.0483 (7) | |
H7 | −0.1848 | 0.1295 | 0.4156 | 0.058* | |
C8 | 0.2044 (3) | 0.3995 (3) | 0.5653 (2) | 0.0438 (6) | |
C9 | 0.2074 (3) | 0.4983 (3) | 0.66579 (19) | 0.0419 (6) | |
C10 | 0.0683 (3) | 0.4953 (3) | 0.7255 (2) | 0.0422 (6) | |
H10 | −0.0351 | 0.4307 | 0.7029 | 0.051* | |
C11 | 0.0864 (3) | 0.5898 (3) | 0.8188 (2) | 0.0469 (6) | |
C12 | 0.2406 (4) | 0.6849 (3) | 0.8525 (2) | 0.0557 (7) | |
H12 | 0.2523 | 0.7472 | 0.9159 | 0.067* | |
C13 | 0.3750 (4) | 0.6877 (3) | 0.7933 (2) | 0.0596 (8) | |
H13 | 0.4778 | 0.7530 | 0.8161 | 0.072* | |
C14 | 0.3607 (3) | 0.5946 (3) | 0.6997 (2) | 0.0505 (7) | |
H14 | 0.4535 | 0.5966 | 0.6598 | 0.061* | |
C15 | −0.2031 (4) | 0.5035 (4) | 0.8545 (3) | 0.0710 (9) | |
H15A | −0.2575 | 0.5241 | 0.7821 | 0.107* | |
H15B | −0.2796 | 0.5218 | 0.9066 | 0.107* | |
H15C | −0.1824 | 0.4012 | 0.8547 | 0.107* | |
C16 | 0.3991 (5) | 0.8175 (4) | 0.3948 (4) | 0.1132 (15) | |
H16A | 0.3265 | 0.8956 | 0.3822 | 0.170* | |
H16B | 0.4388 | 0.7899 | 0.3274 | 0.170* | |
H16C | 0.4992 | 0.8515 | 0.4503 | 0.170* | |
H2 | −0.052 (2) | 0.307 (3) | 0.551 (2) | 0.080* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0460 (4) | 0.0854 (6) | 0.0652 (5) | −0.0006 (4) | 0.0214 (3) | −0.0269 (4) |
Cl2 | 0.0477 (4) | 0.0620 (5) | 0.0732 (5) | −0.0078 (3) | 0.0037 (3) | −0.0223 (4) |
O1 | 0.0428 (10) | 0.0569 (11) | 0.0563 (12) | −0.0079 (9) | 0.0142 (8) | −0.0200 (9) |
O2 | 0.0505 (12) | 0.0888 (15) | 0.0777 (15) | −0.0132 (11) | 0.0315 (11) | −0.0309 (12) |
O3 | 0.0605 (12) | 0.0825 (14) | 0.0529 (12) | −0.0024 (11) | 0.0200 (10) | −0.0229 (10) |
O4 | 0.0470 (12) | 0.0815 (15) | 0.0784 (15) | 0.0085 (10) | 0.0202 (11) | 0.0104 (12) |
N1 | 0.0435 (12) | 0.0456 (12) | 0.0397 (12) | 0.0026 (10) | 0.0100 (9) | −0.0096 (10) |
N2 | 0.0402 (12) | 0.0526 (13) | 0.0425 (12) | 0.0005 (10) | 0.0118 (10) | −0.0158 (10) |
C1 | 0.0434 (14) | 0.0383 (13) | 0.0404 (14) | 0.0037 (11) | 0.0092 (11) | −0.0040 (11) |
C2 | 0.0353 (13) | 0.0410 (13) | 0.0438 (15) | 0.0014 (11) | 0.0064 (11) | −0.0044 (11) |
C3 | 0.0396 (14) | 0.0501 (15) | 0.0410 (14) | 0.0070 (11) | 0.0121 (11) | −0.0071 (12) |
C4 | 0.0487 (15) | 0.0480 (15) | 0.0437 (15) | 0.0070 (12) | 0.0053 (12) | −0.0125 (12) |
C5 | 0.0385 (14) | 0.0426 (14) | 0.0492 (16) | −0.0004 (11) | 0.0013 (11) | −0.0053 (12) |
C6 | 0.0401 (14) | 0.0469 (15) | 0.0502 (16) | 0.0013 (11) | 0.0104 (12) | −0.0080 (12) |
C7 | 0.0466 (15) | 0.0508 (15) | 0.0485 (16) | 0.0016 (13) | 0.0175 (13) | −0.0084 (13) |
C8 | 0.0391 (14) | 0.0456 (15) | 0.0461 (15) | 0.0019 (12) | 0.0098 (12) | −0.0052 (12) |
C9 | 0.0404 (14) | 0.0446 (14) | 0.0388 (14) | 0.0048 (11) | 0.0030 (11) | −0.0046 (11) |
C10 | 0.0357 (13) | 0.0455 (14) | 0.0418 (14) | −0.0018 (11) | 0.0031 (11) | −0.0072 (11) |
C11 | 0.0487 (15) | 0.0491 (15) | 0.0419 (15) | 0.0061 (12) | 0.0063 (12) | −0.0059 (12) |
C12 | 0.0621 (18) | 0.0551 (17) | 0.0444 (16) | −0.0004 (14) | 0.0028 (14) | −0.0153 (13) |
C13 | 0.0510 (17) | 0.0602 (18) | 0.0581 (19) | −0.0117 (14) | −0.0029 (14) | −0.0109 (15) |
C14 | 0.0427 (15) | 0.0538 (16) | 0.0524 (17) | −0.0013 (12) | 0.0076 (12) | −0.0038 (13) |
C15 | 0.0575 (19) | 0.083 (2) | 0.075 (2) | 0.0027 (17) | 0.0269 (16) | −0.0150 (18) |
C16 | 0.090 (3) | 0.103 (3) | 0.148 (4) | −0.001 (2) | 0.025 (3) | 0.045 (3) |
Geometric parameters (Å, °)
Cl1—C3 | 1.730 (2) | C5—C6 | 1.377 (3) |
Cl2—C5 | 1.736 (2) | C6—H6 | 0.93 |
O1—C2 | 1.344 (3) | C7—H7 | 0.93 |
O1—H1 | 0.82 | C8—C9 | 1.490 (3) |
O2—C8 | 1.219 (3) | C9—C14 | 1.382 (3) |
O3—C11 | 1.367 (3) | C9—C10 | 1.393 (3) |
O3—C15 | 1.417 (3) | C10—C11 | 1.381 (3) |
O4—C16 | 1.369 (4) | C10—H10 | 0.93 |
O4—H4 | 0.82 | C11—C12 | 1.381 (3) |
N1—C7 | 1.273 (3) | C12—C13 | 1.358 (4) |
N1—N2 | 1.371 (3) | C12—H12 | 0.93 |
N2—C8 | 1.364 (3) | C13—C14 | 1.381 (4) |
N2—H2 | 0.899 (10) | C13—H13 | 0.93 |
C1—C6 | 1.390 (3) | C14—H14 | 0.93 |
C1—C2 | 1.402 (3) | C15—H15A | 0.96 |
C1—C7 | 1.455 (3) | C15—H15B | 0.96 |
C2—C3 | 1.393 (3) | C15—H15C | 0.96 |
C3—C4 | 1.379 (3) | C16—H16A | 0.96 |
C4—C5 | 1.374 (3) | C16—H16B | 0.96 |
C4—H4A | 0.93 | C16—H16C | 0.96 |
C2—O1—H1 | 109.5 | C14—C9—C10 | 120.3 (2) |
C11—O3—C15 | 118.7 (2) | C14—C9—C8 | 116.0 (2) |
C16—O4—H4 | 109.5 | C10—C9—C8 | 123.7 (2) |
C7—N1—N2 | 120.9 (2) | C11—C10—C9 | 119.0 (2) |
C8—N2—N1 | 115.25 (19) | C11—C10—H10 | 120.5 |
C8—N2—H2 | 127.0 (19) | C9—C10—H10 | 120.5 |
N1—N2—H2 | 117.7 (19) | O3—C11—C10 | 124.3 (2) |
C6—C1—C2 | 119.6 (2) | O3—C11—C12 | 115.3 (2) |
C6—C1—C7 | 119.6 (2) | C10—C11—C12 | 120.4 (2) |
C2—C1—C7 | 120.8 (2) | C13—C12—C11 | 120.3 (2) |
O1—C2—C3 | 118.0 (2) | C13—C12—H12 | 119.9 |
O1—C2—C1 | 123.7 (2) | C11—C12—H12 | 119.9 |
C3—C2—C1 | 118.2 (2) | C12—C13—C14 | 120.7 (2) |
C4—C3—C2 | 122.0 (2) | C12—C13—H13 | 119.7 |
C4—C3—Cl1 | 119.52 (18) | C14—C13—H13 | 119.7 |
C2—C3—Cl1 | 118.44 (18) | C13—C14—C9 | 119.5 (2) |
C5—C4—C3 | 118.8 (2) | C13—C14—H14 | 120.3 |
C5—C4—H4A | 120.6 | C9—C14—H14 | 120.3 |
C3—C4—H4A | 120.6 | O3—C15—H15A | 109.5 |
C4—C5—C6 | 120.9 (2) | O3—C15—H15B | 109.5 |
C4—C5—Cl2 | 119.08 (19) | H15A—C15—H15B | 109.5 |
C6—C5—Cl2 | 119.97 (19) | O3—C15—H15C | 109.5 |
C5—C6—C1 | 120.4 (2) | H15A—C15—H15C | 109.5 |
C5—C6—H6 | 119.8 | H15B—C15—H15C | 109.5 |
C1—C6—H6 | 119.8 | O4—C16—H16A | 109.5 |
N1—C7—C1 | 118.4 (2) | O4—C16—H16B | 109.5 |
N1—C7—H7 | 120.8 | H16A—C16—H16B | 109.5 |
C1—C7—H7 | 120.8 | O4—C16—H16C | 109.5 |
O2—C8—N2 | 120.4 (2) | H16A—C16—H16C | 109.5 |
O2—C8—C9 | 122.0 (2) | H16B—C16—H16C | 109.5 |
N2—C8—C9 | 117.7 (2) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O4i | 0.899 (10) | 1.997 (12) | 2.881 (3) | 167 (3) |
O4—H4···O2 | 0.82 | 2.35 | 2.989 (3) | 135 |
O4—H4···O2ii | 0.82 | 2.34 | 3.023 (3) | 141 |
O1—H1···N1 | 0.82 | 1.84 | 2.557 (3) | 145 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1, −y+1, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: CI2593).
References
- Bhandari, S. V., Bothara, K. G., Raut, M. K., Patil, A. A., Sarkate, A. P. & Mokale, V. J. (2008). Bioorg. Med. Chem.16, 1822–1831. [DOI] [PubMed]
- Bruker (2002). SAINT and SMART Bruker AXS Inc., Madison, Wisconsin, USA.
- Herrick, R. S., Ziegler, C. J., Precopio, M., Crandall, K., Shaw, J. & Jarret, R. M. (2008). J. Organomet. Chem.693, 619–624.
- Liu, H.-B., Wang, M., Wang, Y. & Gu, Q. (2007). Synth. Commun.37, 3815–3826.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Sinha, D., Tiwari, A. K., Singh, S., Shukla, G., Mishra, P., Chandra, H. & Mishra, A. K. (2008). Eur. J. Med. Chem.43, 160–165. [DOI] [PubMed]
- Sun, X.-H., Tao, Y., Liu, Y.-F., Jia, Y.-Q., Chen, B. & Yang, J.-W. (2008). Chin. J. Org. Chem.28, 155–159.
- Suresh, P., Srimurugan, S. & Pati, H. N. (2007). Chem. Lett.36, 1332–1333.
- Tang, C.-B. (2008a). Acta Cryst. E64, o767. [DOI] [PMC free article] [PubMed]
- Tang, C.-B. (2008b). Acta Cryst. E64, o768. [DOI] [PMC free article] [PubMed]
- Wang, Y.-Z., Wang, M.-D., Diao, Y.-P. & Cai, Q. (2008). Acta Cryst. E64, o668. [DOI] [PMC free article] [PubMed]
- Yang, M.-H. & Zheng, Y.-F. (2007). Acta Cryst. E63, o4732.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801235X/ci2593sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053680801235X/ci2593Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report