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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Sep 4;66(Pt 10):o2497. doi: 10.1107/S1600536810033374

(E)-Ethyl 2-cyano-3-[5-nitro-2-(pyrrolidin-1-yl)phen­yl]acrylate

Yapi Marcellin Yapo a,*, Bakary Coulibaly Abou a, Ané Adjou b, Rita Kakou-Yao a, Jules A Tenon a
PMCID: PMC2983149  PMID: 21587494

Abstract

The title compound, C16H17N3O4, was prepared by the reaction of 5-nitro-2-(pyrrolidin-1-yl)benzaldehyde and ethyl cyano­acetate. The mol­ecular structure adopts an E conformation with respect to the C=C double bond. The five-membered ring has a half-chair conformation, with puckering parameters Q(2)= 0.399 (2) Å and ϕ = 93.1 (3)°. In the crystal, inversion dimers , linked by pairs of C—H⋯O inter­actions, are further connected through C—H⋯N hydrogen bonds. Weak slipped π-π inter­actions occur between symmetry-related benzene rings [centroid–centroid distance = 3.785 (1)Å].

Related literature

For related structures, see: Yapo et al. (2010); Zhang et al. (2009a ,b ). For reference bond lengths, see: Allen (2002). For ring conformation analysis, see: Cremer & Pople (1975).graphic file with name e-66-o2497-scheme1.jpg

Experimental

Crystal data

  • C16H17N3O4

  • M r = 315.33

  • Triclinic, Inline graphic

  • a = 8.4137 (3) Å

  • b = 9.9517 (4) Å

  • c = 10.3731 (5) Å

  • α = 73.065 (1)°

  • β = 71.388 (2)°

  • γ = 72.523 (4)°

  • V = 766.56 (6) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 223 K

  • 0.15 × 0.05 × 0.05 mm

Data collection

  • Nonius KappaCCD diffractometer

  • 12261 measured reflections

  • 3925 independent reflections

  • 2436 reflections with I > 3σ(I)

  • R int = 0.04

Refinement

  • R[F 2 > 2σ(F 2)] = 0.045

  • wR(F 2) = 0.098

  • S = 1.01

  • 2436 reflections

  • 208 parameters

  • H-atom parameters constrained

  • Δρmax = 0.29 e Å−3

  • Δρmin = −0.19 e Å−3

Data collection: COLLECT (Nonius, 2001); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: CRYSTALS.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810033374/dn2594sup1.cif

e-66-o2497-sup1.cif (16.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033374/dn2594Isup2.hkl

e-66-o2497-Isup2.hkl (196.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C15—H152⋯O2i 0.98 2.50 3.356 (2) 145
C16—H163⋯N3ii 0.98 2.60 3.574 (3) 172

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors wish to thank the Laboratoire de Physique des Inter­actions Ioniques et Moléculaires of Provence University (France) for the use of the diffractometer.

supplementary crystallographic information

Comment

Recently, the synthesis and structure of tricyclic quinoline derivative have been widely investigated (Yapo et al., 2010). We report herein the crystal structure of the title compound C16H17N3O4 (I). In fact, it is an intermediate compound on which chemical reactions will be made to obtain tricyclic quinoline derivative containing in its molecular structure two coupled rings: quinoline ring and pyrrolidine ring.

The molecular structure of the title complex displays a E conformation with respect to the C11═C12 double bond. The bond distance C12— C13=1.436 (2)Å agrees with recently reported structures (Zhang et al., 2009a; Zhang et al., 2009b) and is characteristic of single bond occuring between carbone sp1 and carbone sp2 [C(sp1)—C(sp2)]. All other bond lengths and angles are not unusual (Allen, 2002).

The pyrrolidine ring has half-chair conformation with puckering parameters Q(2)= 0.399 (2)Å and φ= 93.1 (3)° (Cremer & Pople, 1975)

In the crystal packing, centrosymmetrically related molecules are linked by intermolecular C—H···O hydrogen bonding interactions building pseudo dimers which are further connected through C-H···N hydrogen bonds (Table 1 and Figure 2). Weak π-π interactions occur between symmetry related phenyl rings (Centroid-to-centroid = 3.785 (1)Å, interplanar distance= 3.509Å and a slippage of 1.417Å with symmetry code: (i) 2-x,1-y,-z).

Experimental

To a solution of 5-nitro-2-(pyrrolidin-1-yl)benzaldehyde (2, 9.03 mmol) in anhydrous ethanol (25 ml), ethyl cyanoacetate (2.1 ml, 10.1 mmol) was added. Maintained at room temperature and under magnetic agitation, triethylamine (3 ml) was dropped into the solution. The reaction mixture was maintained at room temperature for 30 min then heated to ethanol reflux during 2 h. After cooling, the precipitate was filtred and then washed with ethanol to obtain yellow crystals in 77% yield. The melting point is 457–458 K.

Refinement

The H atoms were geometrically positioned and treated as riding with C—H in the range 0.93–0.98Å and Uiso(H) in the range 1.2–1.5 times Ueq of the parent atom.

Figures

Fig. 1.

Fig. 1.

Molecular view of the title complex with the atom labeling scheme. Ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitary radii.

Fig. 2.

Fig. 2.

Partial packing view showing the hydrogen bond pattern. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bondings have been omitted for clarity. [Symmetry codes: (i) -x+1, -y+1, -z+1; (ii) x-1, y, z ]

Crystal data

C16H17N3O4 Z = 2
Mr = 315.33 F(000) = 332
Triclinic, P1 Dx = 1.366 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.4137 (3) Å Cell parameters from 12261 reflections
b = 9.9517 (4) Å θ = 4–29°
c = 10.3731 (5) Å µ = 0.10 mm1
α = 73.065 (1)° T = 223 K
β = 71.388 (2)° Prism, yellow
γ = 72.523 (4)° 0.15 × 0.05 × 0.05 mm
V = 766.56 (6) Å3

Data collection

Nonius KappaCCD diffractometer Rint = 0.04
graphite θmax = 29.1°, θmin = 2.1°
φ & ω scans h = 0→11
12261 measured reflections k = −12→13
3925 independent reflections l = −12→14
2436 reflections with I > 3σ(I)

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045 H-atom parameters constrained
wR(F2) = 0.098 w = 1/[σ2(F2) + (0.04P)2 + 0.41P] where P = [max(Fo2,0) + 2Fc2]/3
S = 1.00 (Δ/σ)max = 0.0002
2436 reflections Δρmax = 0.29 e Å3
208 parameters Δρmin = −0.19 e Å3
0 restraints

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O4 0.24506 (16) 0.75552 (14) 0.34637 (12) 0.0392
C6 0.6744 (2) 0.54044 (17) 0.08814 (16) 0.0272
O3 0.38346 (18) 0.74040 (16) 0.50501 (13) 0.0501
N1 0.58761 (18) 0.70320 (15) −0.12042 (14) 0.0318
C11 0.5357 (2) 0.61576 (17) 0.18686 (16) 0.0288
C10 0.8072 (2) 0.48737 (19) −0.14342 (18) 0.0349
O2 1.03617 (19) 0.19215 (16) 0.22812 (15) 0.0536
C14 0.3815 (2) 0.71447 (18) 0.39891 (17) 0.0335
C5 0.6844 (2) 0.58161 (18) −0.05898 (16) 0.0281
C7 0.7910 (2) 0.41913 (18) 0.13881 (17) 0.0302
C8 0.9117 (2) 0.33592 (18) 0.05070 (18) 0.0323
N2 1.0334 (2) 0.21267 (17) 0.10625 (17) 0.0405
C12 0.5355 (2) 0.63394 (17) 0.31088 (16) 0.0295
O1 1.1330 (2) 0.13387 (17) 0.02781 (17) 0.0640
C13 0.6834 (2) 0.5867 (2) 0.36710 (18) 0.0355
N3 0.7983 (2) 0.5498 (2) 0.41549 (19) 0.0528
C9 0.9177 (2) 0.3684 (2) −0.09019 (18) 0.0361
C1 0.6073 (3) 0.7384 (2) −0.27297 (18) 0.0420
C4 0.4900 (2) 0.83167 (19) −0.06191 (18) 0.0374
C16 −0.0507 (3) 0.8668 (2) 0.3594 (2) 0.0538
C15 0.0917 (3) 0.8417 (3) 0.4249 (2) 0.0524
C2 0.4880 (3) 0.8854 (2) −0.2995 (2) 0.0520
C3 0.4940 (3) 0.9553 (2) −0.18931 (19) 0.0458
H111 0.4299 0.6579 0.1601 0.0408*
H101 0.8112 0.5097 −0.2402 0.0501*
H71 0.7850 0.3922 0.2355 0.0416*
H91 1.0005 0.3059 −0.1485 0.0499*
H11 0.7291 0.7413 −0.3221 0.0611*
H12 0.5771 0.6646 −0.3001 0.0612*
H41 0.5454 0.8431 0.0025 0.0516*
H42 0.3687 0.8243 −0.0126 0.0529*
H161 −0.1516 0.9310 0.4046 0.0975*
H162 −0.0169 0.9098 0.2594 0.0977*
H163 −0.0794 0.7744 0.3742 0.0981*
H151 0.1190 0.9366 0.4202 0.0740*
H152 0.0663 0.7875 0.5221 0.0730*
H21 0.5289 0.9403 −0.3927 0.0751*
H22 0.3698 0.8790 −0.2855 0.0754*
H31 0.6032 0.9898 −0.2180 0.0663*
H32 0.3939 1.0346 −0.1743 0.0659*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O4 0.0392 (7) 0.0457 (8) 0.0277 (6) 0.0026 (6) −0.0057 (5) −0.0162 (5)
C6 0.0280 (8) 0.0315 (9) 0.0230 (8) −0.0089 (7) −0.0040 (6) −0.0078 (6)
O3 0.0563 (9) 0.0652 (10) 0.0332 (7) −0.0074 (7) −0.0099 (6) −0.0257 (7)
N1 0.0394 (8) 0.0349 (8) 0.0223 (7) −0.0071 (6) −0.0101 (6) −0.0070 (6)
C11 0.0311 (8) 0.0297 (9) 0.0234 (8) −0.0071 (7) −0.0044 (6) −0.0054 (6)
C10 0.0393 (10) 0.0416 (10) 0.0250 (8) −0.0098 (8) −0.0041 (7) −0.0132 (7)
O2 0.0579 (9) 0.0499 (9) 0.0435 (8) 0.0042 (7) −0.0192 (7) −0.0063 (6)
C14 0.0419 (10) 0.0331 (9) 0.0239 (8) −0.0076 (7) −0.0058 (7) −0.0076 (7)
C5 0.0286 (8) 0.0332 (9) 0.0254 (8) −0.0107 (7) −0.0053 (6) −0.0085 (7)
C7 0.0320 (9) 0.0330 (9) 0.0259 (8) −0.0091 (7) −0.0056 (7) −0.0073 (7)
C8 0.0298 (9) 0.0312 (9) 0.0349 (9) −0.0063 (7) −0.0060 (7) −0.0091 (7)
N2 0.0365 (9) 0.0372 (9) 0.0431 (9) −0.0042 (7) −0.0065 (7) −0.0099 (7)
C12 0.0349 (9) 0.0290 (8) 0.0238 (8) −0.0086 (7) −0.0063 (7) −0.0045 (6)
O1 0.0590 (9) 0.0562 (10) 0.0616 (10) 0.0174 (8) −0.0105 (8) −0.0274 (8)
C13 0.0427 (10) 0.0390 (10) 0.0266 (9) −0.0133 (8) −0.0060 (8) −0.0086 (7)
N3 0.0521 (11) 0.0654 (12) 0.0484 (10) −0.0155 (9) −0.0213 (9) −0.0120 (9)
C9 0.0359 (10) 0.0375 (10) 0.0345 (9) −0.0089 (8) −0.0015 (7) −0.0149 (8)
C1 0.0566 (12) 0.0467 (11) 0.0233 (9) −0.0082 (9) −0.0149 (8) −0.0069 (8)
C4 0.0435 (10) 0.0360 (10) 0.0300 (9) −0.0026 (8) −0.0103 (8) −0.0090 (7)
C16 0.0431 (11) 0.0587 (14) 0.0599 (14) −0.0028 (10) −0.0097 (10) −0.0260 (11)
C15 0.0436 (12) 0.0621 (14) 0.0447 (12) 0.0086 (10) −0.0054 (9) −0.0295 (10)
C2 0.0677 (14) 0.0514 (12) 0.0346 (10) −0.0045 (10) −0.0237 (10) −0.0036 (9)
C3 0.0582 (13) 0.0381 (11) 0.0362 (10) −0.0049 (9) −0.0159 (9) −0.0027 (8)

Geometric parameters (Å, °)

O4—C14 1.330 (2) C12—C13 1.436 (2)
O4—C15 1.462 (2) C13—N3 1.145 (2)
C6—C11 1.460 (2) C9—H91 0.963
C6—C5 1.442 (2) C1—C2 1.511 (3)
C6—C7 1.394 (2) C1—H11 0.993
O3—C14 1.207 (2) C1—H12 0.982
N1—C5 1.350 (2) C4—C3 1.520 (3)
N1—C1 1.483 (2) C4—H41 0.976
N1—C4 1.477 (2) C4—H42 0.999
C11—C12 1.350 (2) C16—C15 1.483 (3)
C11—H111 0.955 C16—H161 0.971
C10—C5 1.426 (2) C16—H162 0.983
C10—C9 1.363 (2) C16—H163 0.977
C10—H101 0.955 C15—H151 1.021
O2—N2 1.227 (2) C15—H152 0.984
C14—C12 1.484 (2) C2—C3 1.521 (3)
C7—C8 1.377 (2) C2—H21 0.972
C7—H71 0.948 C2—H22 0.977
C8—N2 1.448 (2) C3—H31 1.003
C8—C9 1.389 (2) C3—H32 0.972
N2—O1 1.233 (2)
C14—O4—C15 114.97 (14) N1—C1—H11 109.3
C11—C6—C5 121.29 (14) C2—C1—H11 111.6
C11—C6—C7 119.04 (14) N1—C1—H12 110.4
C5—C6—C7 119.46 (14) C2—C1—H12 113.0
C5—N1—C1 120.85 (14) H11—C1—H12 108.5
C5—N1—C4 127.13 (13) N1—C4—C3 103.67 (14)
C1—N1—C4 110.08 (13) N1—C4—H41 110.4
C6—C11—C12 129.25 (16) C3—C4—H41 111.7
C6—C11—H111 115.4 N1—C4—H42 110.9
C12—C11—H111 115.3 C3—C4—H42 110.4
C5—C10—C9 122.08 (16) H41—C4—H42 109.6
C5—C10—H101 118.2 C15—C16—H161 109.4
C9—C10—H101 119.7 C15—C16—H162 110.6
O4—C14—O3 124.77 (16) H161—C16—H162 109.5
O4—C14—C12 112.45 (14) C15—C16—H163 108.3
O3—C14—C12 122.77 (16) H161—C16—H163 108.3
C6—C5—C10 116.84 (15) H162—C16—H163 110.7
C6—C5—N1 124.27 (15) C16—C15—O4 107.71 (16)
C10—C5—N1 118.89 (15) C16—C15—H151 111.3
C6—C7—C8 120.77 (15) O4—C15—H151 107.9
C6—C7—H71 119.6 C16—C15—H152 111.9
C8—C7—H71 119.6 O4—C15—H152 107.8
C7—C8—N2 119.31 (15) H151—C15—H152 110.0
C7—C8—C9 120.95 (16) C1—C2—C3 103.20 (15)
N2—C8—C9 119.74 (15) C1—C2—H21 111.2
C8—N2—O2 119.06 (15) C3—C2—H21 111.1
C8—N2—O1 118.37 (16) C1—C2—H22 112.1
O2—N2—O1 122.55 (16) C3—C2—H22 109.2
C14—C12—C11 122.22 (15) H21—C2—H22 109.9
C14—C12—C13 113.25 (14) C2—C3—C4 102.37 (16)
C11—C12—C13 124.43 (16) C2—C3—H31 110.2
C12—C13—N3 178.06 (19) C4—C3—H31 111.5
C8—C9—C10 119.72 (16) C2—C3—H32 110.2
C8—C9—H91 119.1 C4—C3—H32 111.6
C10—C9—H91 121.2 H31—C3—H32 110.7
N1—C1—C2 103.93 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C15—H152···O2i 0.98 2.50 3.356 (2) 145
C16—H163···N3ii 0.98 2.60 3.574 (3) 172

Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: DN2594).

References

  1. Allen, F. H. (2002). Acta Cryst. B58, 380–388. [DOI] [PubMed]
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  3. Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., De Caro, L., Giacovazzo, C., Polidori, G. & Spagna, R. (2005). J. Appl. Cryst.38, 381–388.
  4. Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA.
  5. Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc.97, 1354–1358.
  6. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  7. Nonius (2001). COLLECT Nonius BV, Delft, The Netherlands.
  8. Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press.
  9. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
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  11. Zhang, D., Zhang, X. & Guo, L. (2009a). Acta Cryst. E65, o90.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810033374/dn2594sup1.cif

e-66-o2497-sup1.cif (16.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033374/dn2594Isup2.hkl

e-66-o2497-Isup2.hkl (196.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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