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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1987 Dec;84(23):8243–8247. doi: 10.1073/pnas.84.23.8243

Molecular cloning and analysis of the regulation of nit-3, the structural gene for nitrate reductase in Neurospora crassa.

Y H Fu 1, G A Marzluf 1
PMCID: PMC299518  PMID: 2891138

Abstract

The nit-3 gene of Neurospora crassa encodes the enzyme nitrate reductase and is regulated by nitrogen catabolite repression and by specific induction with nitrate. The nit-3 gene was isolated from a cosmid-based genomic library by dual selection for benomyl resistance and for the ability to complement a nit-3 mutant strain using the sibling-selection procedure. The nit-3 gene was subcloned as a 3.8-kilobase DNA fragment from a cosmid that carried an approximately 40-kilobase N. crassa DNA insert. A restriction fragment length polymorphism analysis revealed that the cloned segment displayed tight linkage to two linkage-group-4 markers that flank the genomic location of nit-3. RNA gel blot analyses of RNA from wild-type and various mutant strains were carried out to examine the molecular mechanism for regulation of nit-3 gene expression. The nit-3 gene was transcribed to give a large mRNA of approximately 3.4 kilobases, the expected size to encode nitrate reductase. The nit-3 gene was only expressed in wild-type cells subject to simultaneous nitrogen derepression and nitrate induction. A mutant of nit-2, the major nitrogen regulatory gene of Neurospora, did not have detectable levels of nit-3 gene transcripts under the exact conditions in which these transcripts were highly expressed in wild type. Similarly, a mutant of nit-4, which defines a minor positive-acting nitrogen control gene, failed to express detectable levels of the nit-3 transcript. Nitrate reductase gene expression was partially resistant to nitrogen repression in a mutant of the nmr gene, which appears to be a regulatory gene with a direct role in nitrogen catabolite repression. Results are presented that suggest that the enzyme glutamine synthetase does not serve any regulatory role in controlling nitrate reductase gene expression.

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Selected References

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  1. Aviv H., Leder P. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose. Proc Natl Acad Sci U S A. 1972 Jun;69(6):1408–1412. doi: 10.1073/pnas.69.6.1408. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bahns M., Garrett R. H. Demonstration of de novo synthesis of Neurospora crassa nitrate reductase during induction. J Biol Chem. 1980 Jan 25;255(2):690–693. [PubMed] [Google Scholar]
  3. Berlin V., Yanofsky C. Isolation and characterization of genes differentially expressed during conidiation of Neurospora crassa. Mol Cell Biol. 1985 Apr;5(4):849–855. doi: 10.1128/mcb.5.4.849. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Birnboim H. C., Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 1979 Nov 24;7(6):1513–1523. doi: 10.1093/nar/7.6.1513. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Caddick M. X., Arst H. N., Jr, Taylor L. H., Johnson R. I., Brownlee A. G. Cloning of the regulatory gene areA mediating nitrogen metabolite repression in Aspergillus nidulans. EMBO J. 1986 May;5(5):1087–1090. doi: 10.1002/j.1460-2075.1986.tb04326.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Coddington A. Biochemical studies on the nit mutants of Neurospora crassa. Mol Gen Genet. 1976 May 7;145(2):195–206. doi: 10.1007/BF00269594. [DOI] [PubMed] [Google Scholar]
  7. DeBusk R. M., Ogilvie S. Regulation of amino acid utilization in Neurospora crassa: effect of nmr-1 and ms-5 mutations. J Bacteriol. 1984 Nov;160(2):656–661. doi: 10.1128/jb.160.2.656-661.1984. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Dunn-Coleman N. S., Garrett R. H. The role fo glutamine synthetase and glutamine metabolism in nitrogen metabolite repression, a regulatory phenomenon in the lower eukaryote Neurospora crassa. Mol Gen Genet. 1980;179(1):25–32. doi: 10.1007/BF00268442. [DOI] [PubMed] [Google Scholar]
  9. Facklam T. J., Marzluf G. A. Nitrogen regulation of amino acid catabolism in Neurospora crassa. Biochem Genet. 1978 Apr;16(3-4):343–354. doi: 10.1007/BF00484090. [DOI] [PubMed] [Google Scholar]
  10. Flint H. J., Wilkening J. Cloning of the arg-12 gene of Neurospora crassa and regulation of its transcript via cross-pathway amino acid control. Mol Gen Genet. 1986 Apr;203(1):110–116. doi: 10.1007/BF00330391. [DOI] [PubMed] [Google Scholar]
  11. Fu Y. H., Marzluf G. A. Characterization of nit-2, the major nitrogen regulatory gene of Neurospora crassa. Mol Cell Biol. 1987 May;7(5):1691–1696. doi: 10.1128/mcb.7.5.1691. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Hanson M. A., Marzluf G. A. Control of the synthesis of a single enzyme by multiple regulatory circuits in Neurospora crassa. Proc Natl Acad Sci U S A. 1975 Apr;72(4):1240–1244. doi: 10.1073/pnas.72.4.1240. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Mandel M., Higa A. Calcium-dependent bacteriophage DNA infection. J Mol Biol. 1970 Oct 14;53(1):159–162. doi: 10.1016/0022-2836(70)90051-3. [DOI] [PubMed] [Google Scholar]
  14. Marzluf G. A. Regulation of nitrogen metabolism and gene expression in fungi. Microbiol Rev. 1981 Sep;45(3):437–461. doi: 10.1128/mr.45.3.437-461.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Metzenberg R. L. Implications of some genetic control mechanisms in Neurospora. Microbiol Rev. 1979 Sep;43(3):361–383. doi: 10.1128/mr.43.3.361-383.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Patel V. B., Schweizer M., Dykstra C. C., Kushner S. R., Giles N. H. Genetic organization and transcriptional regulation in the qa gene cluster of Neurospora crassa. Proc Natl Acad Sci U S A. 1981 Sep;78(9):5783–5787. doi: 10.1073/pnas.78.9.5783. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Perrine K. G., Marzluf G. A. Amber nonsense mutations in regulatory and structural genes of the nitrogen control circuit of Neurospora crassa. Curr Genet. 1986;10(9):677–684. doi: 10.1007/BF00410916. [DOI] [PubMed] [Google Scholar]
  18. Premakumar R., Sorger G. J., Gooden D. Nitrogen metabolite repression of nitrate reductase in Neurospora crassa. J Bacteriol. 1979 Mar;137(3):1119–1126. doi: 10.1128/jb.137.3.1119-1126.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Premakumar R., Sorger G. J., Gooden D. Physiological characterization of a Neurospora crassa mutant with impaired regulation of nitrate reductase. J Bacteriol. 1980 Nov;144(2):542–551. doi: 10.1128/jb.144.2.542-551.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Premakumar R., Sorger G. J., Gooden D. Repression of nitrate reductase in Neurospora studied by using L-methionine-DL-sulfoximine and glutamine auxotroph gln-1b. J Bacteriol. 1980 Jul;143(1):411–415. doi: 10.1128/jb.143.1.411-415.1980. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Reinert W. R., Marzluf G. A. Genetic and metabolic control of the purine catabolic enzymes of Neurospora crasse. Mol Gen Genet. 1975 Aug 5;139(1):39–55. doi: 10.1007/BF00267994. [DOI] [PubMed] [Google Scholar]
  22. Reinert W. R., Patel V. B., Giles N. H. Genetic regulation of the qa gene cluster of Neurospora crassa: induction of qa messenger ribonucleic acid and dependency on qa-1 function. Mol Cell Biol. 1981 Sep;1(9):829–835. doi: 10.1128/mcb.1.9.829. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Rigby P. W., Dieckmann M., Rhodes C., Berg P. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol. 1977 Jun 15;113(1):237–251. doi: 10.1016/0022-2836(77)90052-3. [DOI] [PubMed] [Google Scholar]
  24. Sikora L., Marzluf G. A. Regulation of L-amino acid oxidase and of D-amino acid oxidase in Neurospora crassa. Mol Gen Genet. 1982;186(1):33–39. doi: 10.1007/BF00422908. [DOI] [PubMed] [Google Scholar]
  25. Stewart V., Vollmer S. J. Molecular cloning of nit-2, a regulatory gene required for nitrogen metabolite repression in Neurospora crassa. Gene. 1986;46(2-3):291–295. doi: 10.1016/0378-1119(86)90414-2. [DOI] [PubMed] [Google Scholar]
  26. Tomsett A. B., Dunn-Coleman N. S., Garrett R. H. The regulation of nitrate assimilation in Neurospora crassa: the isolation and genetic analysis of nmr-1 mutants. Mol Gen Genet. 1981;182(2):229–233. doi: 10.1007/BF00269662. [DOI] [PubMed] [Google Scholar]
  27. Tomsett A. B., Garrett R. H. The isolation and characterization of mutants defective in nitrate assimilation in Neurospora crassa. Genetics. 1980 Jul;95(3):649–660. doi: 10.1093/genetics/95.3.649. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Tyler B. M., Geever R. F., Case M. E., Giles N. H. Cis-acting and trans-acting regulatory mutations define two types of promoters controlled by the qa-1F gene of Neurospora. Cell. 1984 Feb;36(2):493–502. doi: 10.1016/0092-8674(84)90242-3. [DOI] [PubMed] [Google Scholar]
  29. Vollmer S. J., Yanofsky C. Efficient cloning of genes of Neurospora crassa. Proc Natl Acad Sci U S A. 1986 Jul;83(13):4869–4873. doi: 10.1073/pnas.83.13.4869. [DOI] [PMC free article] [PubMed] [Google Scholar]

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