Abstract
In Saccharomyces cerevisiae intron-containing pre-tRNAs are exported from the nucleus to the cytoplasm for removal of the introns, and the spliced tRNAs are returned to the nucleus for reasons that are not understood. The re-imported spliced tRNAs are then subjected to aminoacylation in the nucleolus to ensure that they are functional prior to re-export to the cytoplasm. Previous studies have shown that re-imported spliced tRNAs and mature tRNAs made entirely in the nucleus from intronless precursors are retained in the nucleus of S. cerevisiae in response to glucose, amino acid, nitrogen or inorganic phosphate deprivation. Contrary to these studies, we recently reported that starvation of S. cerevisiae of amino acids or nitrogen results in nuclear accumulation of re-imported spliced tRNAs, but not tRNAs made from intronless precursors. This finding suggests that separate pathways are used for nuclear export of retrogradely transported spliced tRNAs and tRNAs made from intronless pre-tRNAs. In addition, the data support the conclusion that the nuclear re-export pathway for retrogradely transported spliced tRNAs, but not the pathway responsible for nuclear export of tRNAs derived from intronless precursors is regulated during amino acid or nitrogen starvation. This regulation appears to occur at a step after the re-imported spliced tRNAs have undergone aminoacylation quality assurance and, in part, involves the TORC1 signalling pathway. Moreover, it was established that Utp9p is an intranuclear component that only facilitates nuclear re-export of retrogradely transported spliced tRNAs by the β-karyopherin Msn5p. Utp9p acts in concert with Utp8p, a key player in nuclear tRNA export in S. cerevisiae, to translocate aminoacylated re-imported spliced tRNAs from the nucleolus to Msn5p and assist with formation of the Msn5p-tRNA-Gsp1p-GTP export complex. This pathway, however, is not the only one responsible for nuclear re-export of retrogradely transported spliced tRNAs.
Key words: nuclear re-export of tRNA, nuclear tRNA export receptors, regulation of nuclear tRNA export, nuclear tRNA import, TOR signalling, nutrient stress
Introduction
Nuclear-cytoplasmic trafficking of tRNA plays a central role in key cellular processes such as regulation of protein synthesis,1 progression of cell cycle,2–5 response to nutrient availability,6–8 and development of neurodegenerative disorders.9,10 In eukaryotes, tRNAs are encoded by intronless or intron-containing tDNA genes. tRNAs from both classes of tDNA genes are synthesized in the nucleolus by PolIII-mediated transcription as precursor-tRNAs, which are processed to form functional tRNAs.11 tRNA processing involves trimming of the 5′ and 3′ extensions, elaborate base modifications, addition of the nucleotides C, C and A at the 3′ ends, and removal of the introns from intron-containing pre-tRNAs.11 The process of tRNA maturation in Saccharomyces cerevisiae differs from that of mammals in both the order and the location of the maturation steps. While splicing occurs before end maturation in mammals, splicing only occurs after removal of the 5′ leader and 3′ trailer sequences and the addition of the 3′ CCA in S. cerevisiae.11 Moreover, in S. cerevisiae, splicing occurs in the cytoplasm, since the components of the splicing machinery are located on the surface of the mitochondria, and not in the nucleus like in mammals and plants.12–16 Hence, while the maturation of tRNAs derived from intronless pre-tRNAs occurs completely in the nucleus of S. cerevisiae,11 pre-tRNAs containing introns have to exit the nucleus to undergo splicing in the cytoplasm. Interestingly, upon completion of splicing, the spliced tRNAs are returned to the nucleus for reasons that are not understood, and are then re-exported to the cytoplasm.7,17 As is the case for fully processed tRNAs made in the nucleus from intronless pre-tRNAs, the re-imported spliced tRNAs undergo a final quality control step of aminoacylation in the nucleolus to ensure that they are functional prior to re-export to the cytoplasm for participation in protein synthesis (Fig. 1).18–20
The mechanism responsible for nuclear export of intron-containing pre-tRNAs is not entirely understood. Los1p, which is one of the nuclear tRNA export receptors in S. cerevisiae appears to be an export receptor in this pathway, as nuclear accumulation of unspliced pre-tRNAs was detected in a los1 mutant strain (Fig. 1).21 Why Los1p functions as an export receptor for both mature tRNAs and intron-containing pre-tRNAs, or how Los1p discriminates between the two forms of the tRNA is not known. An unknown export receptor also facilitates nuclear export of intron-containing pre-tRNAs, since the function of Los1p is not essential (Fig. 1).21 Despite the lack of understanding of nuclear export of intron-containing pre-tRNAs, the surprising discovery that tRNA splicing occurs in the cytoplasm of S. cerevisiae has raised a number of questions, such as (1) Why is tRNA splicing occurring in the cytoplasm of S. cerevisiae and not in higher eukaryotes? (2) Can other yeasts carry out tRNA splicing in the cytoplasm, and (3) Is cytoplasmic tRNA splicing unique to S. cerevisiae? Investigation of these questions is likely to provide insights into the evolution of the tRNA splicing process.
Mechanism of Nuclear Import of Spliced tRNAs
Genetic studies using mutant strains of proteins involved in nuclear tRNA export or nuclear tRNA metabolism have shown that mature tRNAs derived from intron-containing pre-tRNAs accumulate in the nucleus.19,20,22,23 These findings led to the intriguing possibility that spliced tRNAs are imported back into the nucleus after removal of the introns. Two independent groups established that spliced tRNAs shuttle between the nucleus and cytoplasm using a heterokaryon shuttling assay and an exogenous tRNA gene containing an intron.7,17 More importantly, these data demonstrated that spliced tRNA move from the cytoplasm to the nucleus by a constitutive process, and are re-exported back to the cytoplasm. However, the details of the mechanism responsible for nuclear import of spliced tRNAs are not fully elucidated. Nevertheless, studies suggest that retrograde transport of spliced tRNAs from the cytoplasm to the nucleus occurs by two pathways, a Ran-independent, ATP-dependent pathway and a Ran-GTP/GDP-dependent pathway.7,17 Mtr10p, a β-karyopherin known to be involved in nuclear import of the RNA component of the yeast telomerase, appears to act as an import receptor of the Ran-dependent nuclear tRNA import pathway (Fig. 1).7 However, the factors involved in the Ran-independent, ATP-dependent nuclear tRNA import pathway still remain elusive.
Why spliced tRNAs are returned to the nucleus is not understood. A possibility is that they undergo further maturation and quality assurance, or just quality assurance to make sure that they are fully fit to participate in translation before they are exported back to the cytoplasm. Alternatively, the nuclear tRNA import process may be used to take improperly spliced tRNAs back to the nucleus for repair, or degradation by a nuclear tRNA degradation apparatus.7,17 Thus, S. cerevisiae may use nuclear import of tRNA as a mechanism to segregate functional cytoplasmic tRNAs from newly spliced tRNAs that have not undergone the quality assurance step to verify their functionality. It is possible, however, that nuclear import and/or re-export of spliced tRNAs play an unrealized regulatory role in a mechanism used to co-ordinate the rate of protein synthesis with the metabolic demands of the cell.
Previous studies have shown that starvation of S. cerevisiae for glucose, nitrogen, amino acids or inorganic phosphate results in nuclear accumulation of re-imported spliced tRNAs and mature tRNAs made entirely in the nucleus from intronless precursors.7,8,24 In contrast to these studies, we have shown recently that starvation of S. cerevisiae for amino acids or nitrogen results in nuclear accumulation of reimported spliced tRNAs, but not mature tRNAs made from intronless precursors.25 This finding led us to propose that separate pathways are used for nuclear export of retrogradely transported spliced tRNAs and mature tRNAs made from intronless precursors. Moreover, the data suggest that the nuclear re-export pathway for retrogradely transported spliced tRNAs, but not the pathway responsible for nuclear export of mature tRNAs derived from intronless precursors, is inhibited during amino acid or nitrogen starvation. This block appears to occur at a step after the re-imported spliced tRNAs have undergone aminoacylation quality assurance in the nucleolus, as retrogradely transported tRNAs have been found in the aminoacylated form in nutrient-deprived S. cerevisiae cells.8 However, the mechanism responsible for nuclear re-export of fully functional retrogradely transported spliced tRNAs to the cytoplasm is not understood.
Pathways Implicated in Nuclear Export of tRNAs
Three pathways have been implicated in nuclear tRNA export in S. cerevisiae. These pathways transport tRNAs through the nuclear pore complex (NPC) by a typical carrier-mediated process involving β-karyopherin export receptors and the yeast RanGTPase, Gsp1p. Los1p, the orthologue of the mammalian Xpo-t, was the first β-karyopherin shown to be involved in nuclear tRNA export in S. cerevisiae.26–28 Although Msn5p, the orthologue of the mammalian minor tRNA export receptor Xpo-5,29,30 is known to be involved in nuclear export and import of proteins in S. cerevisiae, it was implicated in nuclear tRNA export based on the finding that a los1 msn5 double mutant strain exhibited reduced efficiency of nuclear export of tRNAs made from intronless and intron-containing pre-tRNAs (data not shown).17 However, we recently provided biochemical evidence that Msn5p is an authentic tRNA export receptor.25 Despite showing reduced efficiency in nuclear tRNA export, the los1 msn5 mutant strain is not compromised in growth or viability.17 This data combined with the observation that both Los1p and Msn5p are non-essential proteins, led to the proposal that there exists an additional nuclear tRNA export pathway involving yet unidentified receptor. Utp8p is an essential component that is common to all the nuclear tRNA export pathways in S. cerevisiae (Fig. 1).22 This protein functions as an intranuclear tRNA chaperone that collects aminoacylated tRNAs derived from intronless and intron-containing pre-tRNAs from the aminoacyl-tRNA synthetases in the nucleolus and delivers them to the nuclear export receptors of the three pathways by using a channelling mechanism.31,32 Furthermore, Utp8p facilitates the formation of the export receptor-tRNA-Gsp1p-GTP export complex.31 Cex1p is another component that is shared by the tRNA export pathways (Fig. 1).33 Cex1p is thought to collect aminoacyl-tRNAs from the tRNA export receptors at the cytoplasmic face of the NPC and channels them to the translation apparatus by delivering the aminoacyl-tRNAs to the eukaryotic elongation factor eEF-1A.33 Genetic studies suggest that these pathways are responsible for nuclear export of mature tRNAs derived from intronless precursors and re-imported spliced tRNAs.17,18,20,22,23 However, we recently provided definitive genetic and biochemical evidence that the Msn5p-mediated pathway is one of the pathways responsible for nuclear re-export of retrogradely transported spliced tRNAs, and that Utp9p is a novel component involved in this pathway (Fig. 1).25
Pathways and Components Implicated in Nuclear Re-Export of Retrogradely Transported Spliced tRNAs
Utp9p is an essential nucleolar protein that was shown previously to be part of a sub-complex consisting of several proteins of the U3 snoRNA-associated protein complex.34–36 This sub-complex also contains Utp8p and is involved in regulating transcription of the rRNA gene. Depletion of Utp9p was found to affect nuclear tRNA export, but not tRNA maturation and aminoacylation, or nuclear export of mRNA and ribosomal subunits.25 Utp9p binds tRNA directly in a saturable manner, but it does not function as a nuclear tRNA export receptor or an adaptor for an export receptor, as it does not shuttle between the nucleus and the cytoplasm.25 Surprisingly, loss of the function of Utp9p resulted in nuclear accumulation of mature tRNAs derived from intron-containing pre-tRNAs, but not those derived from intronless precursors. These findings led to the suggestion that Utp9p is an intranuclear component of the pathway responsible for nuclear re-export of retrogradely transported spliced tRNAs (Fig. 1).25 Moreover, Utp9p interacts in vivo and binds directly in vitro with components of the nuclear tRNA export machinery such as Utp8p, the nuclear export receptor Msn5p and Gsp1p in the GTP bound form. However, unlike Utp8p, Utp9p did not interact with the nuclear tRNA export receptor Los1p or aminoacyl tRNA synthetases.25 This finding suggests that Utp9p facilitates Msn5p-mediated nuclear re-export of retrogradely transported spliced tRNAs, and functions in concert with Utp8p in translocating aminoacylated re-imported spliced tRNAs from the nucleolus to Msn5p in the nucleoplasm (Fig. 1).25 Moreover, biochemical evidence suggests that Utp9p plays a more important role than Utp8p in the formation of the Msn5p-Gsp1p-GTP-tRNA export complex in vivo.25 However, the mechanism by which Utp9p assists with formation of the export complex is not understood. Based on in vitro protein interaction data, we surmised that both Utp8p and Utp9p bound to aminoacylated re-imported spliced tRNA interact with Msn5p; Utp9p then interacts with Gsp1p-GTP to recruit it to Msn5p, allowing Msn5p to bind the tRNA. Gsp1p interacts with Utp8p to facilitate release of the tRNA and dissociation of Utp9p and Utp8p from the export complex.25
These studies demonstrated that Utp9p, Utp8p, Msn5p and Cex1p, which has been shown to co-purify with Msn5p,33 constitute a pathway that is responsible for nuclear re-export of aminoacylated retrogradely transported spliced tRNAs (Fig. 1).25 However, it is likely that other components are involved in the Utp9p-mediated nuclear tRNA re-export pathway because Msn5p and Cex1p are non-essential proteins.17,33 Since Utp9p is an essential protein and affects nuclear re-export of spliced tRNAs whereas no effect on tRNA export is detected in a msn5 mutant strain, it is likely that Utp9p facilitates nuclear re-export of retrogradely transported spliced tRNAs by another export receptor. However, the identity of the tRNA export receptor and components of the Utp9p-dependent, Msn5p-independent nuclear tRNA re-export pathway is not known (Fig. 1). Los1p is unlikely to be this receptor, as Utp9p does not interact with Los1p in vivo or in vitro.25
While the function of Los1p is not essential, studies have shown that depletion of Los1p resulted in reduced efficiency of nuclear export of tRNALeu, tRNAIle and tRNATyr, which are derived from intron-containing pre-tRNAs, and tRNAMet made from intronless precursor.20,23,33 This suggests that Los1p could also be involved in nuclear re-export of retrogradely transported spliced tRNAs. To test this possibility, we investigated whether overexpression of Los1p restores nuclear export of tRNATyr in S. cerevisiae starved of nitrogen (Fig. 2). The BY4742 wild type strain harbouring pYX242, pYX242-UTP8 or pYX242-CEX1 starved of nitrogen over a 1.5 h period retained tRNATyr in the nucleus. In contrast, nitrogen starvation of BY4742 cells overproducing Los1p did not accumulate tRNATyr in the nucleus, indicating that overexpression of Los1p restored nuclear re-export of tRNATyr. Western blot analysis of the same amount of total cell extract, based on actin levels, confirmed that the proteins were overexpressed (data not shown). These data suggest that Los1p can also facilitate nuclear re-export of retrogradely transported spliced tRNAs, and constitute a Utp9p-independent, Los1p-dependent nuclear tRNA re-export pathway. Whether a protein with similar function to Utp9p is involved in the Los1p-dependent pathway is not known. An uncharacterized pathway also facilitates nuclear re-export of retrogradely transported spliced tRNAs, as loss of the function of both Msn5p and Los1p has no effect on cell growth or viability. Thus, there appears to be at least three pathways responsible for nuclear re-export of retrogradely transported spliced tRNAs. However, the relative contribution of each pathway to the re-export of retrogradely transported spliced tRNAs is not known. The identification and characterization of the components of the unknown nuclear tRNA re-export pathway will help to address this issue.
The TORC1 Signalling Pathway Regulates Nuclear Re-export of Retrogradely Transported Spliced tRNAs, but not Nuclear Export of tRNAs made from Intronless Precursors
Nutrient stresses such as glucose, amino acid and nitrogen deprivation have been shown by others to cause nuclear accumulation of mature tRNAs derived from both intronless and intron-containing pre-tRNAs in S. cerevisiae.7,8,24 Furthermore, it was demonstrated that a reg1 mutant strain did not accumulate spliced tRNATyr in the nucleus during glucose starvation.8 In contrast, S. cerevisiae treated with rapamycin, which inhibits the rapamycin-sensitive kinase TOR, resulted in loss of nuclear accumulation of tRNATyr during amino acid starvation.8 These findings suggest that the Snf1 protein kinase signalling pathway regulates nuclear import of cytoplasmic tRNAs made from both classes of pre-tRNAs in the absence of glucose whereas the TOR pathway is involved when cells are starved of amino acids. Thus, it was proposed that nuclear import of cytoplasmic tRNAs made from intronless and intron-containing pre-tRNAs plays a key role in nutrient-related regulation of gene expression and cell division.7,8,24 Contrary to previous studies,7,8 we have shown that amino acid or nitrogen starvation of S. cerevisiae blocks nuclear re-export of retrogradely transported spliced tRNAs, but not mature tRNAs made from intronless precursors.25 Our study, in contrast to previous reports,8 suggests that S. cerevisiae does not retrograde cytoplasmic spliced tRNAs and tRNAs made from intronless pre-tRNAs in response to amino acid or nitrogen starvation.25 Instead the data suggest that the pathway responsible for nuclear re-export of retrogradely transported spliced tRNAs, but not nuclear export of tRNAs made from intronless pre-tRNAs, is subjected to regulation in response to amino acids or nitrogen stress.25
The TORC1 signalling pathway plays a key role in controlling cell growth and division in response to a number of external stimuli, including nitrogen availability.37 Consequently, we investigated whether TORC1 is involved in regulating nuclear re-export of retrogradely transported spliced tRNAs. For this analysis, we used FISH to monitor the cellular location of mature tRNATyr, a tRNA made from intron-containing pre-tRNA, and tRNAGly, which is made from intronless pre-tRNA, during rapamycin treatment. Inhibition of the S. cerevisiae TORC1 by rapamycin simulates nitrogen starvation, and causes the cells to downregulate anabolic processes and upregulate catabolic and growth-inhibitory processes by a variety of mechanisms. Thus, the cells stop growth and enter a G0-like state. While previous studies have shown that rapamycin treatment does not affect nuclear tRNA export in fed cells,8 we found that exposing S. cerevisiae cells to rapamycin for 45 min to 1 h resulted in nuclear accumulation of mature tRNATyr, but did not affect the distribution of mature tRNAGly (Fig. 3). Treatment of cells with the drug delivery solution did not affect nuclear export of tRNATyr and tRNAGly. In addition, tRNATyr was found primarily in the cytoplasm in a rapamycin-insensitive TORC1 mutant strain treated with the drug delivery solution with or without rapamycin (data not shown). These findings suggest that the TOR signalling pathway is responsible for the regulation of the nuclear re-export of retrogradely transported spliced tRNAs in S. cerevisiae cells in response to nitrogen availability.
To ascertain whether nuclear retention of re-imported spliced tRNAs during rapamycin treatment is due to a block in nuclear tRNA aminoacylation, northern blot analysis was used to monitor the aminoacylation status of tRNATyr in rapamycin-treated S. cerevisiae. We found that both nuclear and cytoplasmic tRNATyr remained aminoacylated after treatment with rapamycin (Fig. 4). This result is consistent with previous studies showing that retrogradely transported spliced tRNAs that accumulate in the nucleus of cells starved for amino acids are also aminoacylated.8 Moreover, we have shown that the re-export defect observed in cells depleted of Utp9p was not due to impaired nuclear tRNA aminoacylation.25 Taken together, these results indicate that rapamycin-inhibition of TOR signalling, like nitrogen deprivation, affects the nuclear re-export pathway for retrogradely transported spliced tRNAs at a step after the tRNAs have undergone aminoacylation quality assurance. However, further studies are required to understand how the TOR signalling pathway regulates nuclear re-export of retrogradely transported spliced tRNAs, and to ascertain whether TOR plays a role in regulating nuclear export of mature tRNAs made from intron-containing pre-tRNAs in metazoans.
Concluding Remarks
Nuclear re-export of retrogradely transported spliced tRNAs is facilitated by at least three pathways termed Utp9p-dependent and Msn5p-dependent, Utp9p-independent and Los1p-dependent, and Utp9p-dependent and Msn5p-independent. These pathways share components and nuclear export receptors that are required for nuclear export of mature tRNAs made from intronless pre-tRNAs. However, the nuclear re-export pathways for retrogradely transported spliced tRNAs appear to be segregated from the pathways required for nuclear export of mature tRNAs made from intronless pre-tRNAs by utilizing novel components to select mature re-imported spliced tRNAs for re-export. Why the nuclear tRNA re-export pathways are partly separated from those that facilitate nuclear export of mature tRNAs made from intronless precursors is not understood. Another fascinating finding from our studies of nuclear tRNA export in S. cerevisiae, is the specific regulation of nuclear re-export of retrogradely transported spliced tRNAs, but not nuclear export of mature tRNAs made from intronless precursors in response to amino acids or nitrogen availability, and inhibition of the TORC1 signalling pathway using rapamycin. In addition, we have established that regulation of nuclear re-export of retrogradely transported spliced tRNAs is not due to mislocalization of Msn5p or Los1p to the cytoplasm when the cells are starved of nitrogen or amino acids or by treatment with rapamycin to inhibit TOR (unpublished data). It is possible that the activity of the nuclear tRNA export receptors, in part, is subjected to regulation, since overexpression of Los1p restored nuclear re-export of retrogradely transported tRNATyr when S. cerevisiae is starved of nitrogen. However, why nuclear re-export of retrogradely transported spliced tRNAs, but not nuclear export of tRNAs made from intronless precursors is regulated specifically by the TORC1 signalling pathway or in response to amino acid or nitrogen availability is not understood. In addition to regulation of nuclear re-export of retrogradely transported spliced tRNAs, nuclear export of intron-containing pre-tRNAs is subjected to regulation by stress based on the finding that chemical-induced DNA damage results in a block in nuclear export of intron-containing pre-tRNAs by retention of Los1p in the cytoplasm.4 Considering that intron-containing tRNAs comprise only 25% of the total tRNAs, regulation of their nuclear transport and processing in response to stress is both unanticipated and intriguing. Studies aimed at identifying and characterizing the components involved in nuclear export of intron-containing pre-tRNAs and re-export of retrogradely transported spliced tRNAs will undoubtedly provide valuable insights into the significance of the regulation of the nuclear-cytoplasmic dynamics of intron-containing tRNAs in cell growth and division.
Acknowledgements
This work was supported by operating grants from the Canadian Institutes of Health Research (CIHR) and Natural Sciences and Engineering Research Council of Canada (NSERC). J.B.P. is recipient of a NSERC Doctoral Scholarship.
Footnotes
Previously published online: www.landesbioscience.com/journals/nucleus/article/11250
References
- 1.Kruse C, Willkomm DK, Grunweller A, Vollbrandt T, Sommers S, Busch S, et al. Export and transport of tRNA are coupled to a multi-protein complex. Biochemical J. 2000;346:107–115. [PMC free article] [PubMed] [Google Scholar]
- 2.White RJ. RNA polymerases I and III, growth control and cancer. Nat Rev Mol Cell Biol. 2005;6:69–78. doi: 10.1038/nrm1551. [DOI] [PubMed] [Google Scholar]
- 3.White RJ. RNA polymerase III transcription—a battleground for tumour suppressors and oncogenes. Eur J Cancer. 2004;40:21–27. doi: 10.1016/j.ejca.2003.09.027. [DOI] [PubMed] [Google Scholar]
- 4.Ghavidel A, Kislinger T, Pogoutse O, Sopko R, Jurisica I, Emili A. Impaired tRNA nuclear export links DNA damage and cell cycle checkpoint. Cell. 2007;131:915–926. doi: 10.1016/j.cell.2007.09.042. [DOI] [PubMed] [Google Scholar]
- 5.Bernstein KA, Baserga SJ. The small subunit processome is required for cell cycle progression at G1. Mol Biol Cell. 2004;15:5038–5046. doi: 10.1091/mbc.E04-06-0515. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Shaheen HH, Horetsky RL, Kimball SR, Murthi A, Jefferson LS, Hopper AK. Retrograde nuclear accumulation of cytoplasmic tRNA in rat hepatoma cells in response to amino acid deprivation. Proc Natl Acad Sci USA. 2007;104:8845–8850. doi: 10.1073/pnas.0700765104. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Shaheen HH, Hopper AK. Retrograde movement of tRNAs from the cytoplasm to the nucleus in Saccharomyces cerevisiae. Proc Natl Acad Sci USA. 2005;102:11290–11295. doi: 10.1073/pnas.0503836102. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Whitney ML, Hurto RL, Shaheen HH, Hopper AK. Rapid and reversible nuclear accumulation of cytoplasmic tRNA in response to nutrient availability. Mol Biol Cell. 2007;18:2678–2686. doi: 10.1091/mbc.E07-01-0006. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Schmidt WM, Kraus C, Hoger H, Hochmeister S, Oberndorfer F, Branks M, et al. Mutation in the Scyl1 gene encoding amino-terminal kinase-like protein causes a recessive form of spinocerebellar neurodegeneration. EMBO Rep. 2007;8:691–697. doi: 10.1038/sj.embor.7401001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Sone M, Uchida A, Komatsu A, Suzuki E, Ibuki I, Asada M, et al. Loss of yata, a novel gene regulating the subcellular localization of APPL, induces deterioration of neural tissues and lifespan shortening. PLoS One. 2009;4:4466. doi: 10.1371/journal.pone.0004466. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Hopper AK, Phizicky EM. tRNA transfers to the limelight. Genes Dev. 2003;17:162–180. doi: 10.1101/gad.1049103. [DOI] [PubMed] [Google Scholar]
- 12.Huh WK, Falvo JV, Gerke LC, Carroll AS, Howson RW, Weissman JS, et al. Global analysis of protein localization in budding yeast. Nature. 2003;425:686–691. doi: 10.1038/nature02026. [DOI] [PubMed] [Google Scholar]
- 13.Yoshihisa T, Yunoki-Esaki K, Ohshima C, Tanaka N, Endo T. Possibility of cytoplasmic pre-tRNA splicing: the yeast tRNA splicing endonuclease mainly localizes on the mitochondria. Mol Biol Cell. 2003;14:3266–3279. doi: 10.1091/mbc.E02-11-0757. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Yoshihisa T, Ohshima C, Yunoki-Esaki K, Endo T. Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae. Genes Cells. 2007;12:285–297. doi: 10.1111/j.1365-2443.2007.01056.x. [DOI] [PubMed] [Google Scholar]
- 15.Paushkin SV, Patel M, Furia BS, Peltz SW, Trotta CR. Identification of a human endonuclease complex reveals a link between tRNA splicing and Pre-mRNA 3′ end formation. Cell. 2004;117:311–321. doi: 10.1016/s0092-8674(04)00342-3. [DOI] [PubMed] [Google Scholar]
- 16.Englert M, Latz A, Becker D, Gimple O, Beier H, Akama K. Plant pre-tRNA splicing enzymes are targeted to multiple cellular compartments. Biochimie. 2007;89:1351–1365. doi: 10.1016/j.biochi.2007.06.014. [DOI] [PubMed] [Google Scholar]
- 17.Takano A, Endo T, Yoshihisa T. tRNA actively shuttles between the nucleus and cytosol in yeast. Science. 2005;309:140–142. doi: 10.1126/science.1113346. [DOI] [PubMed] [Google Scholar]
- 18.Steiner-Mosonyi M, Mangroo D. The nuclear tRNA aminoacylation-dependent pathway may be the principal route used to export tRNA from the nucleus in Saccharomyces cerevisiae. Biochemical J. 2004;378:809–816. doi: 10.1042/BJ20031306. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Sarkar S, Azad AK, Hopper AK. Nuclear tRNA aminoacylation and its role in nuclear export of endogenous tRNAs in Saccharomyces cerevisiae. Proc Natl Acad Sci USA. 1999;96:14366–14371. doi: 10.1073/pnas.96.25.14366. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Grosshans H, Hurt E, Simos G. An aminoacylation-dependent nuclear tRNA export pathway in yeast. Genes Dev. 2000;14:830–840. [PMC free article] [PubMed] [Google Scholar]
- 21.Hurt DJ, Wang SS, Lin YH, Hopper AK. Cloning and characterization of LOS1, a Saccharomyces cerevisiae gene that affects tRNA splicing. Mol Cell Biol. 1987;7:1208–1216. doi: 10.1128/mcb.7.3.1208. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Steiner-Mosonyi M, Leslie DM, Dehghani H, Aitchison JD, Mangroo D. Utp8p is an essential intranuclear component of the nuclear tRNA export machinery of Saccharomyces cerevisiae. J Biol Chem. 2003;278:32236–32245. doi: 10.1074/jbc.M302779200. [DOI] [PubMed] [Google Scholar]
- 23.Feng W, Hopper AK. A Los1p-independent pathway for nuclear export of intronless tRNAs in Saccharomyces cerevisiae. Proc Natl Acad Sci USA. 2002;99:5412–5417. doi: 10.1073/pnas.082682699. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.Hurto RL, Tong AHY, Boone C, Hopper AK. Inorganic phosphate deprivation causes tRNA nuclear accumulation via retrograde transport in Saccharomyces cerevisiae. Genetics. 2007;176:841–852. doi: 10.1534/genetics.106.069732. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Eswara MB, McGuire AT, Pierce JB, Mangroo D. Utp9p Facilitates Msn5p-mediated Nuclear Re-export of Retrograded tRNAs in Saccharomyces cerevisiae. Mol Biol Cell. 2009;20:5007–5025. doi: 10.1091/mbc.E09-06-0490. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Hellmuth K, Lau DM, Bischoff FR, Kunzler M, Hurt E, Simos G. Yeast Los1p has properties of an exportin-like nucleocytoplasmic transport factor for tRNA. Mol Cell Biol. 1998;18:6374–6386. doi: 10.1128/mcb.18.11.6374. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Arts GJ, Fornerod M, Mattaj IW. Identification of a nuclear export receptor for tRNA. Curr Biol. 1998;8:305–314. doi: 10.1016/s0960-9822(98)70130-7. [DOI] [PubMed] [Google Scholar]
- 28.Kutay U, Lipowsky G, Izaurralde E, et al. Identification of a tRNA-specific nuclear export receptor. Mol Cell. 1998;1:359–369. doi: 10.1016/s1097-2765(00)80036-2. [DOI] [PubMed] [Google Scholar]
- 29.Bohnsack MT, Regener K, Schwappach B, Saffrich R, Paraskeva E, Hartmann E, et al. Exp5 exports eEF1A via tRNA from nuclei and synergizes with other transport pathways to confine translation to the cytoplasm. EMBO J. 2002;21:6205–6215. doi: 10.1093/emboj/cdf613. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Calado A, Treichel N, Muller EC, Otto A, Kutay U. Exportin-5-mediated nuclear export of eukaryotic elongation factor 1A and tRNA. EMBO J. 2002;21:6216–6224. doi: 10.1093/emboj/cdf620. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Strub BR, Eswara MBK, Pierce JB, Mangroo D. Utp8p is a nucleolar tRNA-binding protein that forms a complex with components of the nuclear tRNA export machinery in Saccharomyces cerevisiae. Mol Biol Cell. 2007;18:3845–3859. doi: 10.1091/mbc.E06-11-1016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.McGuire AT, Keates RAB, Cook S, Mangroo D. Structural modeling identified the tRNA-binding domain of Utp8p, an essential nucleolar component of the nuclear tRNA export machinery of Saccharomyces cerevisiae. Biochem Cell Biol. 2009;87:431–443. doi: 10.1139/o08-145. [DOI] [PubMed] [Google Scholar]
- 33.McGuire AT, Mangroo D. Cex1p is a novel cytoplasmic component of the Saccharomyces cerevisiae nuclear tRNA export machinery. EMBO J. 2007;26:288–300. doi: 10.1038/sj.emboj.7601493. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Krogan NJ, Peng WT, Cagney G, Robinson MD, Haw R, Zhong G, et al. High-definition macromolecular composition of yeast RNA-processing complexes. Mol Cell. 2004;13:225–239. doi: 10.1016/s1097-2765(04)00003-6. [DOI] [PubMed] [Google Scholar]
- 35.Gallagher JEG, Dunbar DA, Granneman S, Mitchell BM, Osheim Y, Beyer AL, et al. RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components. Genes Dev. 2004;18:2506–2517. doi: 10.1101/gad.1226604. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Dragon F, Gallagher JEG, Compagnone-Post PA, Mitchell BM, Porwancher KA, Wehner KA, et al. A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature. 2002;417:967–970. doi: 10.1038/nature00769. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Wullschleger S, Loewith R, Hall MN. TOR signaling in growth and metabolism. Cell. 2006;124:471–484. doi: 10.1016/j.cell.2006.01.016. [DOI] [PubMed] [Google Scholar]