Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1994 Sep;22(17):3583–3589.

PROSITE: recent developments.

A Bairoch 1, P Bucher 1
PMCID: PMC308326  PMID: 7937064

Abstract

PROSITE is a compilation of sites and patterns found in protein sequences; it can be used as a method of determining the function of uncharacterized proteins translated from genomic or cDNA sequences.

Full text

PDF
3585

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Appel R. D., Bairoch A., Hochstrasser D. F. A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. Trends Biochem Sci. 1994 Jun;19(6):258–260. doi: 10.1016/0968-0004(94)90153-8. [DOI] [PubMed] [Google Scholar]
  2. Argos P. A sequence motif in many polymerases. Nucleic Acids Res. 1988 Nov 11;16(21):9909–9916. doi: 10.1093/nar/16.21.9909. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Barker W. C., Hunt L. T., George D. G. Identifying domains in protein sequences. Protein Seq Data Anal. 1988;1(5):363–373. [PubMed] [Google Scholar]
  4. Braithwaite D. K., Ito J. Compilation, alignment, and phylogenetic relationships of DNA polymerases. Nucleic Acids Res. 1993 Feb 25;21(4):787–802. doi: 10.1093/nar/21.4.787. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Fuchs R. Predicting protein function: a versatile tool for the Apple Macintosh. Comput Appl Biosci. 1994 Apr;10(2):171–178. doi: 10.1093/bioinformatics/10.2.171. [DOI] [PubMed] [Google Scholar]
  6. Gribskov M., McLachlan A. D., Eisenberg D. Profile analysis: detection of distantly related proteins. Proc Natl Acad Sci U S A. 1987 Jul;84(13):4355–4358. doi: 10.1073/pnas.84.13.4355. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Henikoff S., Henikoff J. G. Automated assembly of protein blocks for database searching. Nucleic Acids Res. 1991 Dec 11;19(23):6565–6572. doi: 10.1093/nar/19.23.6565. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Henikoff S. Sequence analysis by electronic mail server. Trends Biochem Sci. 1993 Jul;18(7):267–268. doi: 10.1016/0968-0004(93)90179-q. [DOI] [PubMed] [Google Scholar]
  9. Hodgman T. C. The elucidation of protein function by sequence motif analysis. Comput Appl Biosci. 1989 Feb;5(1):1–13. doi: 10.1093/bioinformatics/5.1.1. [DOI] [PubMed] [Google Scholar]
  10. Kolakowski L. F., Jr, Leunissen J. A., Smith J. E. ProSearch: fast searching of protein sequences with regular expression patterns related to protein structure and function. Biotechniques. 1992 Dec;13(6):919–921. [PubMed] [Google Scholar]
  11. Ogiwara A., Uchiyama I., Seto Y., Kanehisa M. Construction of a dictionary of sequence motifs that characterize groups of related proteins. Protein Eng. 1992 Sep;5(6):479–488. doi: 10.1093/protein/5.6.479. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Sibbald P. R., Sommerfeldt H., Argos P. Automated protein sequence pattern handling and PROSITE searching. Comput Appl Biosci. 1991 Oct;7(4):535–536. doi: 10.1093/bioinformatics/7.4.535. [DOI] [PubMed] [Google Scholar]
  13. Smith H. O., Annau T. M., Chandrasegaran S. Finding sequence motifs in groups of functionally related proteins. Proc Natl Acad Sci U S A. 1990 Jan;87(2):826–830. doi: 10.1073/pnas.87.2.826. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Stoehr P. J., Omond R. A. The EMBL Network File Server. Nucleic Acids Res. 1989 Aug 25;17(16):6763–6764. doi: 10.1093/nar/17.16.6763. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES