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. 1986 Oct 10;14(19):7633–7646. doi: 10.1093/nar/14.19.7633

Sequences coding for the ribosomal protein L14 in Xenopus laevis and Xenopus tropicalis; homologies in the 5' untranslated region are shared with other r-protein mRNAs.

E Beccari, P Mazzetti, A Mileo, I Bozzoni, P Pierandrei-Amaldi, F Amaldi
PMCID: PMC311785  PMID: 3774540

Abstract

In the haploid genome of Xenopus laevis there are two genes coding for the r-protein L14. It is not known if they are located on the same chromosome. cDNA clones deriving from the transcripts of the two genes have been isolated from an oocyte messenger cDNA bank showing that they are both expressed. We have studied the structure of one of the L14 genes by Electron Microscopy, restriction mapping and sequencing. An allelic form of the L14 gene was also isolated. It contains a large deletion covering the 5' end region up to the middle of the third intron. The 5' end of the X. laevis L14 gene was compared to that of the corresponding gene in the closely related species X. tropicalis and found to be highly conserved. The L14 gene has multiple initiation sites, but the large majority of the transcripts start in the middle of a pyrimidine tract not preceded by a canonical TATA box as in other eukaryotic housekeeping genes. The X. laevis L1 and L14 genes have a common decanucleotide in the first exon in the same position with regard to the initiator ATG which just precedes the first intron. The decanucleotide shows homology with the X. laevis 18S rRNA.

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Selected References

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  1. Amaldi F., Beccari E., Bozzoni I., Luo Z. X., Pierandrei-Amaldi P. Nucleotide sequences of cloned cDNA fragments specific for six Xenopus laevis ribosomal proteins. Gene. 1982 Mar;17(3):311–316. doi: 10.1016/0378-1119(82)90147-0. [DOI] [PubMed] [Google Scholar]
  2. Bozzoni I., Fragapane P., Annesi F., Pierandrei-Amaldi P., Amaldi F., Beccari E. Expression of two Xenopus laevis ribosomal protein genes in injected frog oocytes. A specific splicing block interferes with the L1 RNA maturation. J Mol Biol. 1984 Dec 25;180(4):987–1005. doi: 10.1016/0022-2836(84)90267-5. [DOI] [PubMed] [Google Scholar]
  3. Bozzoni I., Tognoni A., Pierandrei-Amaldi P., Beccari E., Buongiorno-Nardelli M., Amaldi F. Isolation and structural analysis of ribosomal protein genes in Xenopus laevis. Homology between sequences present in the gene and in several different messenger RNAs. J Mol Biol. 1982 Nov 5;161(3):353–371. doi: 10.1016/0022-2836(82)90244-3. [DOI] [PubMed] [Google Scholar]
  4. Burns D. K., Stark B. C., Macklin M. D., Chooi W. Y. Isolation and characterization of cloned DNA sequences containing ribosomal protein genes of Drosophila melanogaster. Mol Cell Biol. 1984 Dec;4(12):2643–2652. doi: 10.1128/mcb.4.12.2643. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Dudov K. P., Perry R. P. The gene family encoding the mouse ribosomal protein L32 contains a uniquely expressed intron-containing gene and an unmutated processed gene. Cell. 1984 Jun;37(2):457–468. doi: 10.1016/0092-8674(84)90376-3. [DOI] [PubMed] [Google Scholar]
  6. Fabijanski S., Pellegrini M. Isolation of a cloned DNA segment containing a ribosomal protein gene of Drosophila melanogaster. Gene. 1982 Jun;18(3):267–276. doi: 10.1016/0378-1119(82)90165-2. [DOI] [PubMed] [Google Scholar]
  7. Loreni F., Ruberti I., Bozzoni I., Pierandrei-Amaldi P., Amaldi F. Nucleotide sequence of the L1 ribosomal protein gene of Xenopus laevis: remarkable sequence homology among introns. EMBO J. 1985 Dec 16;4(13A):3483–3488. doi: 10.1002/j.1460-2075.1985.tb04107.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
  9. Pierandrei-Amaldi P., Beccari E. Messenger RNA for ribosomal proteins in Xenopus laevis oocytes. Eur J Biochem. 1980 May;106(2):603–611. doi: 10.1111/j.1432-1033.1980.tb04608.x. [DOI] [PubMed] [Google Scholar]
  10. Rubin C. M., Schmid C. W. Pyrimidine-specific chemical reactions useful for DNA sequencing. Nucleic Acids Res. 1980 Oct 24;8(20):4613–4619. doi: 10.1093/nar/8.20.4613. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Salim M., Maden B. E. Nucleotide sequence of Xenopus laevis 18S ribosomal RNA inferred from gene sequence. Nature. 1981 May 21;291(5812):205–208. doi: 10.1038/291205a0. [DOI] [PubMed] [Google Scholar]
  12. Wittmann-Liebold B., Geissler A. W., Lin A., Wool I. G. Sequence of the amino-terminal region of rat liver ribosomal proteins S4, S6, S8, L6, L7a, L18, L27, L30, L37, L37a, and L39. J Supramol Struct. 1979;12(4):425–433. doi: 10.1002/jss.400120403. [DOI] [PubMed] [Google Scholar]

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