Abstract
The endoplasmic reticulum (ER)-resident protein kinase/endoribonuclease inositol-requiring enzyme 1 (IRE1) is activated through transautophosphorylation in response to protein folding overload in the ER lumen and maintains ER homeostasis by triggering a key branch of the unfolded protein response. Here we show that mammalian IRE1α in liver cells is also phosphorylated by a kinase other than itself in response to metabolic stimuli. Glucagon-stimulated protein kinase PKA, which in turn phosphorylated IRE1α at Ser724, a highly conserved site within the kinase activation domain. Blocking Ser724 phosphorylation impaired the ability of IRE1α to augment the up-regulation by glucagon signaling of the expression of gluconeogenic genes. Moreover, hepatic IRE1α was highly phosphorylated at Ser724 by PKA in mice with obesity, and silencing hepatic IRE1α markedly reduced hyperglycemia and glucose intolerance. Hence, these results suggest that IRE1α integrates signals from both the ER lumen and the cytoplasm in the liver and is coupled to the glucagon signaling in the regulation of glucose metabolism.
Keywords: endoplasmic reticulum stress, G protein-coupled receptor, metabolic disease
Homeostasis in the endoplasmic reticulum (ER) is central to the proper function and survival of eukaryotic cells. Accumulation of unfolded/misfolded proteins in the ER lumen triggers the unfolded protein response (UPR), which reduces ER stress by enhancing the ER's capacity to manage the workload of protein folding (1). The mammalian UPR is executed through three canonical signaling branches mediated by the ER-localized transmembrane proteins, inositol-requiring enzyme 1 (IRE1), PKR-like endoplasmic reticulum kinase (PERK), and activating transcription factor 6 (ATF6). Conserved from yeast to humans, IRE1 is the most ancient sensor of ER stress and possesses both protein Ser/Thr kinase and endoribonuclease (RNase) activities (1–5). Under ER stress conditions, IRE1 is activated through dimerization and transautophosphorylation (6, 7). Activation of IRE1α results in the nonconventional splicing of X-box binding protein 1 (Xbp1) mRNA to generate an active form of this transcription factor that induces a major transcriptional program of the UPR (8–10). Interestingly, chemical manipulation of the activation mode of IRE1α has been shown to generate alternate RNase outputs (11), suggesting complex structural features of this molecule upon autophosphorylation within its kinase domain to activate its RNase activity. Recently reported crystal structures of the cytoplasmic kinase/endoribonuclease region of yeast Ire1, as well as the dephosphorylated human IRE1α, revealed a dimeric orientation (12, 13) or oligomeric arrangements (14) for transautophosphorylation, implying that this kinase is unlikely to be accessible for phosphorylation by other kinases than itself (14) and the XBP1-specific RNase activity is dependent on autophosphorylation (12). However, it remains largely unknown if mechanisms aside from autophosphorylation are operative in activating IRE1, particularly under physiological or pathophysiological conditions.
The ER is thought to be a critical nutrient-sensing organelle that is functionally linked with metabolic responses (15). Emerging evidence has shown that in mammals, the UPR pathways are associated with changes in metabolic cues (15–19), as well as with obesity-associated metabolic stress conditions (20–23). Given our previous finding that glucose stimulation of IRE1α phosphorylation in pancreatic β-cells represents a glucose-sensing event (18), we considered the possibility that induction of IRE1α phosphorylation in response to metabolic stimuli could reflect a general phenomenon of physiological activation of this UPR sensor. Here we show that IRE1α can integrate metabolic signals through phosphorylation by PKA of the G protein-coupled receptor (GPCR) pathway and is coupled to glucose metabolism in liver cells, thereby contributing to disruption of glucose homeostasis under obesity-associated metabolic ER stress.
Results
IRE1α Is Metabolically Activated by Glucagon in the Liver.
To test if mammalian IRE1α is able to sense changes in metabolic cues, we first examined the phosphorylation status of liver IRE1α in mice under fasted or fed states. In parallel with elevated phosphorylation of cAMP response element-binding protein (CREB), phosphorylation of IRE1α at Ser724, a highly conserved positive regulatory site (Ser841 in yeast Ire1) within its activation segment of the kinase domain (12–14), markedly increased upon fasting as detected by a phospho-site–specific antibody (Fig. 1A). In contrast, fasting did not enhance the phosphorylation of eukaryotic translation initiation factor 2α (eIF2α), the downstream target of the PERK pathway of the UPR (1). Furthermore, glucagon, the principal hormone that regulates hepatic glucose production in the fasted state, robustly augmented the phosphorylation of IRE1α but not eIF2α in livers of mice (Fig. 1B), as well as in isolated primary hepatocytes (Fig. 1C), suggesting that glucagon selectively affected the IRE1α branch of the UPR pathways. Notably, glucagon-induced IRE1α phosphorylation at Ser724 did not increase the splicing of Xbp1 mRNA (Fig. 1 B and C), contrasting that observed upon treatment with thapsigargin, a chemical inducer of ER stress (Fig. 1C). Although up-regulating the mRNA expression of two gluconeogenic genes, G6pase and Pepck (SI Appendix, Figs. S1A and S2A), glucagon did not increase the mRNA abundance of two UPR genes, Chop and Bip (SI Appendix, Figs. S1B and S2A). On the other hand, thapsigargin-induced phosphorylation of IRE1α (Fig. 1C) was accompanied by increased mRNA abundance of Chop and Bip but not that of G6pase and Pepck (SI Appendix, Fig. S2B). As an internal control, actin mRNA expression was not affected in hepatocytes when exposed to either glucagon or thapsigargin (SI Appendix, Fig. S2C). These results indicate that glucagon-induced acute phosphorylation of IRE1α represents a metabolic activation event, which is distinct from that induced by typical ER stress. In keeping with this idea, glucagon-stimulated phosphorylation did not cause a detectable shift of the IRE1α protein when examined by immunoblot analysis (Fig. 1D), in contrast to the thapsigargin-induced shift that most likely resulted from multiple-site autophosphorylation of IRE1α upon ER stress (13, 14). These data thus raise the possibility that mechanisms aside from transautophosphorylation are operative in initiating the metabolic activation of the IRE1α pathway.
Next, we investigated whether IRE1α acts as a critical component in mediating glucagon's metabolic effects. In comparison with primary liver cells infected with a scrambled control adenovirus (Ad-shCON), knockdown of the expression of IRE1α with Ad-shIRE1α-#1 or -#2, which expressed one of two shRNAs directed against IRE1α, significantly compromised the stimulation by glucagon of the mRNA expression of G6pase and Pepck without affecting the phosphorylation of CREB (Fig. 2A). Moreover, transcriptomic analysis (SI Appendix, Fig. S3A) revealed a remarkable blunting effect of IRE1α knockdown on glucagon-regulated gene-expression programs in liver cells, as indicated by a Pearson Correlation Coefficient (PCC) of −0.64 (Fig. 2B). Among genes that were significantly up-regulated or down-regulated by glucagon induction, ∼37% or ∼43% were oppositely affected by IRE1α knockdown (Fig. 2B), which were enriched by ∼9.5- or ∼11.5-fold over all array-probed genes (P < 2.2E-16, Fisher's exact test) (SI Appendix, Fig. S3B). Parametric analysis of gene set enrichment (PAGE) also showed a profound influence of IRE1α deficiency upon glucagon-regulated cellular pathways and biological processes (SI Appendix, Fig. S3C), including those associated with carbohydrate, lipid, and amino acid metabolism. Notably, among transcription factors involved in the regulation of lipid metabolism and enzymes related to triglyceride synthesis, which were found to be up-regulated under ER stress in hepatocytes from mice with liver-specific deletion of IRE1α (24), IRE1α knockdown under glucagon-stimulated conditions did not cause prominent changes in the expression of C/ebpβ, C/ebpδ, or Pparγ, but resulted in increased expression of Scd1, Dgat1/2, and Acc1 (SI Appendix, Fig. S3D). Importantly, knockdown of hepatic IRE1α markedly decreased the glucose production capacity (Fig. 2C) of hepatocytes isolated from Ad-shIRE1α-#2–infected mice in the absence or presence of stimulation with forskolin, a chemical activator of protein kinase A (PKA) of the glucagon signaling pathway. Suppression of hepatic IRE1α in mice also led to a significant attenuation of the hyperglycemic response to glucagon (Fig. 2D). Together, these results demonstrate that the IRE1α pathway of the UPR in the liver is responsive to glucagon stimulation and is functionally implicated in mediating glucagon's regulatory actions in glucose metabolism.
PKA Is Required for Glucagon-Induced Phosphorylation of IRE1α.
Glucagon triggers a cascade of signal transduction events through activation of its seven-transmembrane GPCR. Stimulation of adenylate cyclase activity through the stimulatory G protein (Gαs) leads to increased cAMP production, thereby activating PKA for CREB phosphorylation (25). Glucagon can also increase the intracellular calcium in a phospholipase C (PLC)-dependent manner (26). To test the idea that a protein kinase other than IRE1α itself may link glucagon receptor signaling with the observed stimulation of IRE1α phosphorylation, we examined whether PKA is involved. Interestingly, pharmacological PKA inhibitor H89, but not PLC inhibitor U73122, blunted glucagon-stimulated phosphorylation of IREα as well as CREB in primary hepatocytes (Fig. 3A). In contrast, H89 showed no such inhibitory effect on thapsigargin-induced phosphorylation of IRE1α (SI Appendix, Fig. S4A). Epinephrine, another agonist of Gαs-coupled receptor and regulator of hepatic glucose metabolism, could also stimulate the phosphorylation of IRE1α, which was likewise attenuated by H89 (Fig. 3B). Arguing for a direct connection of cAMP-dependent PKA activation with IRE1α phosphorylation, both forskolin (an activator of adenylate cyclase) and Br-cAMP (a cAMP analog) were able to increase the phosphorylation of IRE1α in liver cells (SI Appendix, Fig. S4B). Ruling out possible nonspecific effects of H89 (27), adenovirus-mediated knockdown of hepatic PKA expression with Ad-shPKA abolished glucagon-stimulated but not thapsigargin-induced phosphorylation of IRE1α (Fig. 3C). These results clearly demonstrate that PKA is required for the phosphorylation of IRE1α evoked by the GPCR-cAMP pathway. To verify further that glucagon-induced phosphorylation of IRE1α is independent of its capability of transautophophorylation, we used a Lys599→Ala599 (K599A) substitution kinase-dead mutant of human IRE1α that was unable to autophosphorylate spontaneously (18) when adenovirally overexpressed in primary hepatocytes, as analyzed using the phospho-site–specific antibody that could not detect the Ser724→Ala724 (S724A) mutant of IRE1α (Fig. 3D). Overexpressed S724A mutant failed to be autophosphorylated at this site located within the structurally disordered central activation segment of IRE1α (12), and blocking its phosphorylation may cause disruption of IRE1α's functional outputs (17, 18). Consistently, glucagon increased the phosphorylation at Ser724 of IRE1α-K599A, which did not alter its inactivity for splicing Xbp1 mRNA (Fig. 3D). In contrast, thapsigargin was unable to increase overtly the phosphorylation of IRE1α-K599A (SI Appendix, Fig. S5A) through activation of the endogenous IRE1α. Because the IRE1α-K599A mutant could be transphosphorylated at a detectable level by the overexpressed EGFP-IRE1α-WT fusion protein that was robustly autophosphorylated (SI Appendix, Fig. S5B), Ser724 within the IRE1α-K599A mutant might be more preferably phosphorylated by PKA than by the endogenous IRE1α. In addition, H89 attenuated glucagon-induced phosphorylation of IRE1α-K599A at Ser724, but not that of IRE1α-WT resulting from forced autophosphorylation (Fig. 3D). Notably, the S724A mutant retained its ability to splice Xbp1 mRNA, suggesting that phosphorylation at this single site may not be essential for activating its RNase activity. Given that Ser724 is positioned within a consensus target sequence (RHS) of PKA (28), we reasoned that IRE1α may be a direct phosphorylation substrate of PKA. Indeed, purified recombinant PKA (SI Appendix, Fig. S6A) but not PKCε (SI Appendix, Fig. S6B) increased the phosphorylation at Ser724 of immunoprecipitated Flag-tagged IRE1α-WT or IRE1α-K599A from hepatocytes (Fig. 3E), as well as a purified cytoplasmic fragment of IRE1α (Fig. 3F), both of which could be inhibited by H89. Thus, these data revealed a previously unanticipated PKA-dependent mechanism by which hepatic IRE1α phosphorylation is metabolically linked to the GPCR pathway.
Blocking Phosphorylation at Ser724 Affects the Metabolic Output of IRE1α.
We then sought to assess the functional significance of PKA-directed phosphorylation at Ser724 of hepatic IRE1α. First, band-shift analysis by immunoblotting showed a considerably less extent of shift of the adenovirally overexpressed IRE1α-S724A mutant protein than that of IRE1α-WT (Fig. 4A), whereas glucagon-induced phosphorylation did not cause a detectable shift of the autophosphorylation-deficient mutant IRE1α-K599A (Fig. 4A). This finding indicates that blocking Ser724 phosphorylation might impede IRE1α from being fully activated through transautophosphorylation. Next, we examined the effects of deficiency in Ser724 phosphorylation upon IRE1α-evoked changes of the hepatic transcriptome. Genome-wide transcriptional profiling analysis (SI Appendix, Fig. S7A) showed that S724A mutation significantly attenuated IRE1α-induced changes of gene-expression profiles, as indicated by a PCC of −0.51 (Fig. 4B). For genes significantly up-regulated or down-regulated by IRE1α, ∼21% or ∼13% were oppositely influenced by S724A mutation (Fig. 4B), which were enriched by ∼5.3- or ∼9.0-fold, respectively, relative to all genes (P < 2.2E-16, Fisher's exact test) (SI Appendix, Fig. S7B). PAGE analysis also revealed a large impact of S724A mutation upon IRE1α-elicited alterations in metabolism-related cellular pathways (SI Appendix, Fig. S7C), including gluconeogenesis. Next, we verified the importance of Ser724 phosphorylation in IRE1α regulation of gluconeogenic genes by quantitative RT-PCR. Under glucagon-stimulated conditions, S724A mutation significantly blunted—and K599A mutation completely abolished—the ability of IRE1α to augment the mRNA abundance of G6pase and Pepck (Fig. 4C). These data suggest that phosphorylation of hepatic IRE1α at Ser724, which is also targeted by PKA, dictates the functional output of IRE1α, and may constitute a key step in glucagon regulation of the gluconeogenic program. As genetic ablation of hepatic IRE1α or XBP1 has been shown to affect lipid metabolism (24, 29, 30), we wondered whether XBP1 can mediate IRE1α's effect on the up-regulation of gluconeogenic genes. Surprisingly, adenoviral overexpression in hepatocytes of the spliced form of XBP1 (SI Appendix, Fig. S8A) did not enhance, but rather suppressed, the expression of G6pase and Pepck upon glucagon stimulation (SI Appendix, Fig. S8B), and markedly increased the expression of Bip. This finding is consistent with a recent study documenting that modest hepatic overexpression of the spliced form of XBP1 protein in mouse models suppressed the gluconeogenic program and improved glucose metabolism (31). Moreover, adenovirus-mediated knockdown of XBP1 expression in hepatocytes (SI Appendix, Fig. S8C) significantly reduced the expression of the XBP1 target gene Erdj4 upon ER stress, but did not affect glucagon-induced expression of G6pase and Pepck (SI Appendix, Fig. S8D). Consistent with the reported findings that sXBP1 levels were increased in a pancreatic β-cell line upon prolonged exposure (14 h) to forskolin (32), chronic treatment of hepatocytes with glucagon for 16 h also increased Xbp1 mRNA splicing (SI Appendix, Fig. S9A), without further influencing the expression of G6pase and Pepck (SI Appendix, Fig. S9B). These results thus argue for a lesser role for sXBP1 in glucagon up-regulation of gluconeogenic genes, further suggesting that IRE1α most likely contributes, in an XBP1-independent manner, to glucagon-elicited metabolic regulatory programs in the liver.
Highly Phosphorylated Hepatic IRE1α Is a Hyperglycemic Driver Under Metabolic ER Stress.
To gain insights into the physiological significance of PKA-mediated crosstalk between IRE1α and the glucagon signaling pathway, we determined the phosphorylation status of hepatic IRE1α from leptin receptor-deficient db/db mice (18), which displayed hyperglycemia and hyperglucagonemia in the fasted state (SI Appendix, Fig. S10A). In comparison with wild-type (+/+) littermates, db/db animals showed markedly increased phosphorylation of hepatic IRE1α, CREB, and eIF2α (Fig. 5A), suggesting simultaneous hyperactivation of PKA and PERK or PKR kinases under obesity-associated metabolic ER stress (20, 33, 34). Surprisingly, this hyperactivation state of IRE1α in db/db livers, as detected by prominently elevated Ser724 phosphorylation, was not associated with increased Xbp1 mRNA splicing (Fig. 5B); nor did this increased phosphorylation cause a shift of IRE1α protein as that observed upon thapsigargin treatment (Fig. 5C). Supporting the idea that increased hepatic PKA activity could largely account for the increased phosphorylation of IRE1α in db/db mice, treatment by H89 substantially decreased the phosphorylation of IRE1α as well as CREB but not that of eIF2α (Fig. 5A and SI Appendix, Fig. S10B), accompanied by a considerable reduction of XBP1 splicing. This finding clearly demonstrates that the obesity-associated increase of hepatic IRE1α phosphorylation indeed primarily stemmed from dysregulation of PKA activity (33), rather than from classical ER stress resulting from increased workload of protein folding. Conceivably, in the face of obesity, this PKA-dependent hyperactivation of IRE1α may arise largely from hyperglucagonemia, which plays a critical part in type 2 diabetes (26, 35). Next, we examined whether the highly phosphorylated IRE1α in the liver is an essential contributor to hyperglycemia. Compared with the Ad-shCON–infected control group, adenovirus-mediated knockdown of hepatic IRE1α by Ad-shIRE1α-#2 (SI Appendix, Fig. S11A) markedly decreased the mRNA abundance of G6pase and Pepck (Fig. 5D), as well as that of the spliced form of XBP1 (SI Appendix, Fig. S11B), ruling out the involvement of XBP1 in the observed repression of gluconeogenic genes. Moreover, knockdown of hepatic IRE1α expression substantially normalized fasting hyperglycemia in db/db mice (Fig. 5E) without significantly affecting their body weight (SI Appendix, Fig. S11C). Additionally, animals with hepatic IRE1α suppression not only exhibited significantly reduced hyperglycemic responses to pyruvate (Fig. 5F) or glucagon (SI Appendix, Fig. S11D), but also showed markedly improved glucose tolerance (Fig. 5G). These results further demonstrate that obesity-associated, PKA-dependent hyperactivation enables hepatic IRE1α to act as a critical driver in disrupting glucose homeostasis, suggesting that targeted inhibition of hepatic IRE1α may bear therapeutic benefits against hyperglycemia.
Discussion
Taken together, our findings establish a PKA-dependent mechanism that links the UPR sensor IRE1α to the GPCR signaling pathway in the liver under both physiological and pathophysiological states. As depicted in our proposed model (SI Appendix, Fig. S12), upon stimulation by metabolic signals like the GPCR-agonist glucagon, PKA can directly phosphorylate IRE1α at Ser724, a regulatory site that governs its function. This PKA-mediated phosphorylation represents a hitherto unanticipated cytoplasmic event leading to the metabolic activation of IRE1α, which is distinct from that initiated through autophosphorylation in response to the ER luminal events during ER stress (i.e., accumulation of unfolded/misfolded proteins). Metabolic activation by the glucagon pathway of hepatic IRE1α can exert a range of metabolic effects, including regulation of the gluconeogenic program in an XBP1-independent manner.
Currently, it remains an open question how IRE1α, upon phosphorylation by PKA from the cytoplasm, can exert its effect on glucagon-regulated metabolic programs in the liver. Because we observed a lack of involvement of XBP1 splicing in IRE1α-dependent up-regulation of gluconeogenic genes, it is possible that the acute activation mode of IRE1α evoked by the glucagon-PKA pathway may be separated from activation of its XBP1-specific RNase activity. On the other hand, under conditions of chronic glucagon exposure, it is unclear whether PKA-dependent IRE1α phosphorylation can promote the activation of its RNase activity for XBP1 splicing, and the precise metabolic action of the endogenous sXBP1 in this setting also remains elusive. However, given the multitude of downstream signaling events that can be engaged following IRE1α activation (36), it is not unreasonable to speculate that RNase-independent mechanisms may exist to execute its metabolic actions in response to glucagon stimulation.
It is interesting to note that another UPR sensor ATF6, upon activation by classic ER stress, was reported to interact with CRTC2 and disturb its ability to coactivate CREB for up-regulating gluconeogenic genes (16). In addition, hepatic overexpression of the sXBP1 protein, the molecule targeted by IRE1α during typical ER stress, was shown to repress the expression of gluconeogenic genes and improve glucose metabolism in the insulin resistant ob/ob mice (31). Whereas a recent study showed that alterations of lipid composition in the ER contributed to increased phosphorylation of IRE1α in the obese livers (37), our results apparently unmasked a distinct PKA-dependent activation mode of IRE1α that acted, without involving the splicing of Xbp1 mRNA, as a critical driver of hyperglycemia in db/db mice. Thus, it seems that dysregulated metabolic signals leading to an increase in the PKA activity in the cytoplasm, as well as aberrant lipid and calcium metabolism in the ER, are both responsible for the metabolic hyperactivation of IRE1α under obesity-associated ER stress conditions. Nonetheless, given the broad roles of the GPCR-PKA pathway in a myriad of biological processes, modulation of the IRE1α pathway in this context may offer valuable therapeutic leads against many human diseases including diabetes.
Materials and Methods
Animal Studies.
Male wild-type C57BL/6J mice were purchased from Shanghai Laboratory Animal Co. Ltd., and male C57BL/6J db/db mice and their wild-type littermates were from Model Animal Research Center, Nanjing University. Animals were housed in laboratory cages at a temperature of 23 ± 3 °C and a humidity of 35 ± 5% under a 12-h dark/light cycle with free access to standard chow (Shanghai Laboratory Animals Co.) and water in accredited animal facilities. All animals were killed under anesthetic conditions or by cervical dislocation. Livers were snap-frozen in liquid nitrogen immediately after resection and stored at −80 °C. All experimental protocols were approved by the Institutional Animal Care and Use Committee at the Institute for Nutritional Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences. Adenovirus administration, glucagon challenge test, and glucose or pyruvate tolerance test were carried out as described in the SI Appendix, Materials and Methods.
Isolation of Primary Hepatocytes and Adenovirus Infection.
Primary hepatocytes were isolated from male C57BL/6J mice at 8 to 12 wk of age. Hepatocytes were infected for 48 or 72 h with adenoviruses at a multiplicity of infection of 40 and were treated with the desired reagents before protein extraction for Western immunoblot analysis. Generation of recombinant adenoviruses was as described in the SI Appendix, Materials and Methods.
Detailed materials and experimental procedures for immunoblotting, RT-PCR, IRE1α phosphorylation analyses, glucose production assays, and microarray analyses were all described in SI Appendix, Materials and Methods.
Statistical Analysis.
All data are presented as the mean ± SEM. Statistical analysis was performed using unpaired two-tailed t test, and one-way or two-way ANOVA followed by Bonferroni's post test with GraphPad Prism 5.0. P < 0.05 was considered to be statistically significant.
Supplementary Material
Acknowledgments
We thank Hua-sheng Xiao and Li Zhu for conducting microarray assays, Shan-shan Pang for assisting with tail-vein adenoviral injection, and Zheng-Gang Liu and Charles E. Samuel for critical reading of the manuscript. This work was supported by Grants 81021002, 30988002, 90713027, 30830033, and 30970584 from the National Natural Science Foundation, the Ministry of Science and Technology (973 Program 2011CB910900 and 2007CB947100), the Chinese Academy of Sciences (Knowledge Innovation Programs KSCX2-EW-R-09 and KSCX1-YW-02; Chief Scientist Program-SIBS2008006; and the Chinese Academy of Sciences/State Administration of Foreign Experts Affairs International Partnership Program); Science and Technology Commission of Shanghai Municipality Grants 10XD1406400 and 08dj1400601 (to Yong Liu and W.L.); and Ministry of Science and Technology Grant 2006BAI23B00 (to X.G.).
Footnotes
The authors declare no conflict of interest.
Data deposition: The microarray data are to be deposited in the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database, www.ncbi.nlm.nih.gov/geo (accession nos. GSE31638).
This article is a PNAS Direct Submission.
This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1107394108/-/DCSupplemental.
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