Skip to main content
PMC home page
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1982 May 11;10(9):2963–2970. doi: 10.1093/nar/10.9.2963

The 5S ribosomal RNAs of Paracoccus denitrificans and Prochloron.

R M MacKay, D Salgado, L Bonen, E Stackebrandt, W F Doolittle
PMCID: PMC320668  PMID: 7099971

Abstract

The nucleotide sequences of the 5S rRNAs of Paracoccus denitrificans and Prochloron sp. are (formula: see text), respectively. Specific phylogenetic relationships of P. denitrificans with purple non-sulphur bacteria, and of Prochloron with cyanobacteria are demonstrated, and unique features of potential secondary structure are described.

Full text

PDF
2968

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Alexander L. J., Stewart T. S. Nucleotide sequence of Lactobacillus viridescens 5S RNA. Nucleic Acids Res. 1980 Mar 11;8(5):979–987. doi: 10.1093/nar/8.5.979. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Almassy R. J., Dickerson R. E. Pseudomonas cytochrome c551 at 2.0 A resolution: enlargement of the cytochrome c family. Proc Natl Acad Sci U S A. 1978 Jun;75(6):2674–2678. doi: 10.1073/pnas.75.6.2674. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bonen L., Cunningham R. S., Gray M. W., Doolittle W. F. Wheat embryo mitochondrial 18S ribosomal RNA: evidence for its prokaryotic nature. Nucleic Acids Res. 1977 Mar;4(3):663–671. doi: 10.1093/nar/4.3.663. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Bonen L., Doolittle W. F. On the prokaryotic nature of red algal chloroplasts. Proc Natl Acad Sci U S A. 1975 Jun;72(6):2310–2314. doi: 10.1073/pnas.72.6.2310. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Brownlee G. G., Sanger F., Barrell B. G. The sequence of 5 s ribosomal ribonucleic acid. J Mol Biol. 1968 Jun 28;34(3):379–412. doi: 10.1016/0022-2836(68)90168-x. [DOI] [PubMed] [Google Scholar]
  6. Corry M. J., Payne P. I., Dyer T. A. The nucleotide sequence of 5 S rRNA from the blue-green alga Anacystis nidulans. FEBS Lett. 1974 Sep 15;46(1):63–66. doi: 10.1016/0014-5793(74)80335-2. [DOI] [PubMed] [Google Scholar]
  7. Delihas N., Andersen J., Sprouse H. M., Dudock B. The nucleotide sequence of the chloroplast 5S ribosomal RNA from spinach. Nucleic Acids Res. 1981 Jun 25;9(12):2801–2805. doi: 10.1093/nar/9.12.2801. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Donis-Keller H., Maxam A. M., Gilbert W. Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res. 1977 Aug;4(8):2527–2538. doi: 10.1093/nar/4.8.2527. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Donis-Keller H. Phy M: an RNase activity specific for U and A residues useful in RNA sequence analysis. Nucleic Acids Res. 1980 Jul 25;8(14):3133–3142. doi: 10.1093/nar/8.14.3133. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Doolittle W. F., Bonen L. Molecular sequence data indicating an endosymbiotic origin for plastids. Ann N Y Acad Sci. 1981;361:248–259. doi: 10.1111/j.1749-6632.1981.tb46522.x. [DOI] [PubMed] [Google Scholar]
  11. DuBuy B., Weissman S. M. Nucleotide sequence of Pseudomonas fluorescens 5 S ribonucleic acid. J Biol Chem. 1971 Feb 10;246(3):747–761. [PubMed] [Google Scholar]
  12. Fox G. E., Woese C. R. 5S RNA secondary structure. Nature. 1975 Aug 7;256(5517):505–507. doi: 10.1038/256505a0. [DOI] [PubMed] [Google Scholar]
  13. Hori H., Osawa S., Murao K., Ishikura H. The nucleotide sequence of 5S ribosomal RNA from Micrococcus lysodeikticus. Nucleic Acids Res. 1980 Nov 25;8(22):5423–5426. doi: 10.1093/nar/8.22.5423. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. John P., Whatley F. R. Paracoccus denitrificans and the evolutionary origin of the mitochondrion. Nature. 1975 Apr 10;254(5500):495–498. doi: 10.1038/254495a0. [DOI] [PubMed] [Google Scholar]
  15. MacKay R. M., Doolittle W. F. Nucleotide sequences of Acanthamoeba castellanii 5S and 5.8S ribosomal ribonucleic acids: phylogenetic and comparative structural analyses. Nucleic Acids Res. 1981 Jul 24;9(14):3321–3334. doi: 10.1093/nar/9.14.3321. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. MacKay R. M., Gray M. W., Doolittle W. F. Nucleotide sequence of Crithidia fasciculata cytosol 5S ribosomal ribonucleic acid. Nucleic Acids Res. 1980 Nov 11;8(21):4911–4917. doi: 10.1093/nar/8.21.4911. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Marotta C. A., Varricchio F., Smith I., Weissman S. M. The primary structure of Bacillus subtilis and Bacillus stearothermophilus 5 S ribonucleic acids. J Biol Chem. 1976 May 25;251(10):3122–3127. [PubMed] [Google Scholar]
  18. Nazar R. N., Matheson A. T. Nucleotide sequence of Thermus aquaticus ribosomal 5 S ribonucleic acid. Sequence homologies in thermophilic organisms. J Biol Chem. 1977 Jun 25;252(12):4256–4261. [PubMed] [Google Scholar]
  19. Newhouse N., Nicoghosian K., Cedergren R. J. The nucleotide sequence of phenylalanine tRNA and 5S RNA from Rhodospirillum rubrum. Can J Biochem. 1981 Nov-Dec;59(11-12):921–932. doi: 10.1139/o81-130. [DOI] [PubMed] [Google Scholar]
  20. Parish J. H., Kirby K. S. Reagents which reduce interactions between ribosomal RNA and rapidly labelled RNA from rat liver. Biochim Biophys Acta. 1966 Dec 21;129(3):554–562. doi: 10.1016/0005-2787(66)90070-0. [DOI] [PubMed] [Google Scholar]
  21. Peattie D. A. Direct chemical method for sequencing RNA. Proc Natl Acad Sci U S A. 1979 Apr;76(4):1760–1764. doi: 10.1073/pnas.76.4.1760. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Pribula C. D., Fox G. E., Woese C. R. Nucleotide sequence of Clostridium pasteurianum 5S rRNA. FEBS Lett. 1976 May 1;64(2):350–352. doi: 10.1016/0014-5793(76)80326-2. [DOI] [PubMed] [Google Scholar]
  23. Sanger F., Brownlee G. G., Barrell B. G. A two-dimensional fractionation procedure for radioactive nucleotides. J Mol Biol. 1965 Sep;13(2):373–398. doi: 10.1016/s0022-2836(65)80104-8. [DOI] [PubMed] [Google Scholar]
  24. Simoncsits A. 3' Terminal labelling of RNA of RNA with beta-32P-pyrophosphate group and its application to the sequence analysis of 5S RNA from Streptomyces griseus. Nucleic Acids Res. 1980 Sep 25;8(18):4111–4124. doi: 10.1093/nar/8.18.4111. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Spencer D. F., Bonen L., Gray M. W. Primary sequence of wheat mitochondrial 5S ribosomal ribonucleic acid: functional and evolutionary implications. Biochemistry. 1981 Jul 7;20(14):4022–4029. doi: 10.1021/bi00517a011. [DOI] [PubMed] [Google Scholar]
  26. Stahl D. A., Luehrsen K. R., Woese C. R., Pace N. R. An unusual 5S rRNA, from Sulfolobus acidocaldarius, and its implications for a general 5S rRNA structure. Nucleic Acids Res. 1981 Nov 25;9(22):6129–6137. doi: 10.1093/nar/9.22.6129. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Studnicka G. M., Eiserling F. A., Lake J. A. A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes. Nucleic Acids Res. 1981 Apr 24;9(8):1885–1904. doi: 10.1093/nar/9.8.1885. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Timkovich R., Dickerson R. E., Margoliash E. Amino acid sequence of Paracoccus denitrificans cytochrome c550. J Biol Chem. 1976 Apr 25;251(8):2197–2206. [PubMed] [Google Scholar]
  29. Uchida T., Bonen L., Schaup H. W., Lewis B. J., Zablen L., Woese C. The use of ribonuclease U2 in RNA sequence determination. Some corrections in the catalog of oligomers produced by ribonuclease T1 digestion of Escherichia coli 16S ribosomal RNA. J Mol Evol. 1974 Feb 28;3(1):63–77. doi: 10.1007/BF01795977. [DOI] [PubMed] [Google Scholar]
  30. Withers N. W., Alberte R. S., Lewin R. A., Thornber J. P., Britton G., Goodwin T. W. Photosynthetic unit size, carotenoids, and chlorophyll-protein composition of Prochloron sp., a prokaryotic green alga. Proc Natl Acad Sci U S A. 1978 May;75(5):2301–2305. doi: 10.1073/pnas.75.5.2301. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Woese C., Sogin M., Stahl D., Lewis B. J., Bonen L. A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic bacilli: some modifications in the Sanger method for RNA sequencing. J Mol Evol. 1976 Apr 9;7(3):197–213. doi: 10.1007/BF01731489. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES