Abstract
This study details the electronic structure of the heme-peroxo-copper adduct {[(F8)Fe(DCHIm)]-O2-[Cu(AN)]}+ (LSAN) in which bridges the metals in a μ-1,2 or “end-on” configuration. LSAN is generated by addition of coordinating base to the parent complex {[(F8)Fe]-O2-[Cu(AN)]}+ (HSAN) in which the bridges the metals in an μ-η2:η2 or “side-on” mode. In addition to the structural change of the bridging geometry, coordination of the base changes the spin state of the heme fragment (from S = 5/2 in HSAN to S = 1/2 in LSAN) that results in an anti-ferromagnetically coupled diamagnetic ground state in LSAN. The strong ligand field of the porphyrin modulates the high-spin to low-spin effect on Fe-peroxo bonding relative to non-heme complexes, which is important in the O—O bond cleavage process. Based on DFT calculations, the ground state of LSAN is dependent on the Fe—O—O—Cu dihedral angle, wherein acute angles (< ~150°) yield an anti-ferromagnetically coupled electronic structure, while more obtuse angles yield a ferromagnetic ground state. LSAN is diamagnetic, and thus has an antiferromagnetically coupled ground state with a calculated Fe—O—O—Cu dihedral angle of 137°. The nature of the bonding in LSAN, and the frontier molecular orbitals which lead to this magneto-structural correlation, provide insight into possible spin topology contributions to O—O bond cleavage by cytochrome c oxidase.
1. Introduction
Cytochrome c oxidase (CcO) catalyzes the terminal enzymatic step of the electron transport chain, the reduction of dioxygen to water.1,2 The source of the electrons is cytochrome c (cyt c), and the reaction is overall highly thermodynamically favorable. The excess free energy produced from the redox reaction is efficiently converted into a chemiosmotic potential by pumping protons from the mitochondrial matrix across the inner membrane into the intermembraneous space as follows:
The proton gradient is used downstream by ATP synthase to generate ATP. Despite the fact that the overall reaction is thermodynamically favorable, the first, one-electron reduction of dioxygen is uphill, necessitating sophistication at the oxygen reaction site to overcome this facet of catalysis. Nature has selected a unique hetero-bimetallic active site, which features a copper ion strategically juxtaposed ~5 Å above a heme cofactor.3,4 The copper is ligated by three histidine residues, one of which is covalently tethered to a nearby tyrosine residue, a crosslink that is thought to be functional.5
A simplified consensus mechanism for CcO is illustrated in Figure 1. Entry into catalysis begins from the reduced enzyme R with the binding of dioxygen to form intermediate A, which has been assigned as a formally ferric-superoxo species based on transient resonance Raman experiments.6–8 The next intermediate, PM, has been assigned as a ferryl-heme — cupric hydroxide — tyrosine radical based on a variety of spectral and chemical evidence. The existence of a high-valent Fe(IV)=O in PM is based on mixed O2 isotope resonance Raman spectral studies which unequivocally demonstrated that in PM, the O—O bond is broken.9 Evidence for the involvement of the crosslinked tyrosine, specifically as a net H• donor, comes from ATR-FTIR,10–12 EPR,13 and an iodination reaction followed by degradative mass spectrometry (MS).14
The conversion of state A to PM is of significant interest from a fundamental standpoint as it contains the reductive cleavage of the O—O bond. Moreover, the proposed net H• abstraction from tyrosine provides impetus for study of the nature of the active oxidant. Collman and co-workers have recently synthesized a binucleating scaffold derived from the picket-fence porphyrin motif wherein a copper binding site was engineered into the pocket above the heme. This system was able to abstract H• from phenols both inter-15 and intra-16 molecularly (when a phenol was tethered to one of the copper ligand arms) and reduce O2 to H2O under rate-limiting electron flux.17 An Fe(III)-superoxo species was trapped and is proposed to function as the active oxidant. We and others have hypothesized involvement of an unobserved peroxo intermediate during the A to PM conversion.18–20 A synthetic example that demonstrates the structural feasibility of such an intermediate comes from Naruta and coworkers, who succeeded in the crystallographic characterization of a heme—peroxo—copper adduct that has a μ-η2:η1 peroxo core.21 The synthetic strategies employed independently by Collman and Naruta involve a porphyrin ligand scaffold with a preorganized copper binding site in close proximity to the heme.22,23 An alternative strategy using discrete heme and copper monomer components has also been successful as a result of favorable reaction kinetics.24 In an early example,25 the reaction of a mixture of [(F8)FeII] and [(TMPA)CuI(CH3CN)]+ with dioxygen at subambient temperatures resulted in the formation of {[(F8)Fe]-O2-[Cu(TMPA)]}+ that, based on spectroscopic studies, also contains a μ-η2:η1 peroxo core.26,27 Neither the crystallographically characterized complex nor {[(F8)Fe]-O2-[Cu(TMPA)]}+ perform the biomimetic O—O bond cleavage reaction with phenols.
To test the ability of peroxo formulations for the net hydrogen atom abstraction from tyrosine, the systematic synthesis and spectroscopic definition of small molecule heme—peroxo—copper adducts with varying ligand scaffolds has been pursued. The studies have proven fruitful, including the recent preparation and spectroscopic elucidation of the heme-peroxo-copper adduct {[(F8)Fe(DCHIm)]-O2-[Cu(AN)]}+ (LSAN, AN = bis[3-(dimethylamino)propyl]amine]), in which the peroxo moiety bridges in a μ-1,2 (η1:η1) or “end-on” geometry. The heme fragment of LSAN is low-spin (S = 1/2) and is anti-ferromagnetically coupled to the Cu(II) (S = 1/2) to yield a diamagnetic ground state. LSAN is generated from the reaction of {[(F8)Fe]-O2-[Cu(AN)]}+ (HSAN)28,29 with coordinating base (dicyclohexyl imidazole, DCHIm) (Figure 2).29 HSAN contains a μ-η2:η2 or “side-on” peroxo structure type, with a high-spin (HS, S = 5/2) ferric heme antiferromagnetically coupled through the peroxo to the Cu(II) (S = 1/2) resulting in an ST = 2 ground state. Based on initial low-temperature studies,29 LSAN (but not HSAN) is reactive towards phenol, and thus provides a unique platform to survey the factors that contribute to reactivity in heme—peroxo—copper adducts. This manuscript details the electronic structure of LSAN, based on the correlation of spectral features with density functional theory calculations (Figure 3, using the geometry optimized truncated model from reference 30), and compares the spin-state/reactivity correlations in heme-copper adducts with that previously detailed for non-heme iron-peroxo complexes.31 During the course of these studies, we developed a magneto-structural correlation deriving from the mechanism of magnetic superexchange in LSAN, which has implications for spin topology contributions to O—O bond cleavage by CcO.
2. Results and Analysis
2.1. Resonance Raman Excitation Profile
The absorption spectrum of LSAN is shown in Figure 4 and is dominated by the heme spectral features at 421 nm (ε: 142.7 mM−1cm−1), 537 (ε: 11.5 mM−1cm−1), and two low energy features at 789 nm (ε: 1.5 mM−1cm−1) and 951 nm (ε: 0.9 mM−1cm−1). The resonance Raman spectrum of LSAN displays three oxygen isotope modes at 796 cm−1, 586 cm−1, and 394 cm−1. Previously, these bands were assigned as the νO—O (796 cm−1), νFe—O (586 cm−1), and tentatively as the δN—Fe—O (394 cm−1) modes.30 The excitation dependence of the intensity of the νO—O and νFe—O vibrational features (the δN—Fe—O feature was too weak to be profiled) correlate to the 789 nm absorption band in the UV-visible spectrum (Figure 4). The νFe—O is significantly more intense than the νO—O, indicating the absorption band is a CT transition. Such a low energy CT transition is unusual, and is indicative of a highly covalent peroxo-iron interaction (vide infra).
2.2 Electronic Structure Calculations: Correlations to Experimental Data
To further probe the spectral features of LSAN, DFT calculations were performed on a truncated model of LSAN (by changing the cyclohexyl rings of the bound imidazole to methyl groups). As detailed below, the computed properties of LSAN reproduce the experimentally observed diamagnetic ground state, the isotope sensitive vibrational modes, the low-energy CT transitions observed optically, and the coupling of the Raman vibrational modes to the CT transition. Thus, the calculations are used to enhance the spectral assignments, and to understand the peroxo-Fe and peroxo-Cu bonding in LSAN.
2.2.1. Analytical Frequencies
The normal modes derived from an analytical frequency calculation on the optimized geometric coordinates of LSAN were used to correlate to the resonance Raman data and to verify the assignment of the isotope sensitive bands. The potential energy distributions (PED) of the normal modes are given in Table 1. Due to the large size of the molecule, the Fe—O—O—Cu core modes coincide in energy with ligand modes, and thus mix, leading to fractional components of the core modes distributed over several modes of the molecule which adds complexity to the analysis. Nonetheless, it is clear that the DFT calculation predicts oxygen isotope sensitive clusters of modes at 840 cm−1 (ν166, ν167), ~594 cm−1 (ν129, ν131), and ~487 cm−1 (ν109, ν103) assigned as the νO—O, νFe—O, and νCu—O vibrations respectively. The PED of these modes support their assignment, as indicated by the high distribution of these respective internal coordinates in the corresponding normal modes. The DFT calculations also predict a low energy mode at 383 cm−1 (ν88), which downshifts to 379 cm−1 in the 18O2 isotopologue. This mode, although mixed with a variety of other motion, is best described as the trans-axial δNIm—Fe—O bend, consistent with the assignment in reference 30. No other modes with significant oxygen isotope dependence were found in the calculations. The νCu—O is not observed in the resonance Raman spectrum due to a lack of Cu—O excited state distortion upon excitation into the peroxo → Fe(III) CT transition (see Section 2.2.4.).
Table 1.
energy (cm−1) | potential energy distribution (%) | ||||||||
---|---|---|---|---|---|---|---|---|---|
mode | k | 16O2 | 18O2 | νO—O | νFe—O | νCu—O | δFe—O—O | δCu—O—O | δN—Fe—O |
υ88 | 0.80 | 383 | 379 | 0 | 6 | 7 | 6 | 0 | 8 |
υ103 | 0.43 | 460 | 452 | 0 | −2 | 18 | −1 | 0 | 0 |
υ109 | 0.75 | 487 | 477 | −1 | −8 | 35 | 0 | 0 | 0 |
υ129 | 1.84 | 589 | 562 | 0 | 26 | 4 | −11 | −2 | −1 |
υ131 | 1.79 | 594 | 0 | 20 | 3 | −10 | −1 | −2 | |
υ166 | 4.07 | 839 | 795 | 37 | −2 | 0 | 0 | 0 | 0 |
υ167 | 4.17 | 840 | 36 | −2 | 0 | 0 | 0 | 0 |
2.2.2. Electronic Structure
Consistent with the observed diamagnetism in the NMR spectrum,29 LSAN is well described as a broken-symmetry (BS) singlet (ST = 0) that is calculated to be 2.2 kcal/mol lower in energy than the triplet. In this singlet, the low-spin Fe(III) and the Cu(II) are anti-ferromagnetically coupled. The low-spin electronic configuration of the heme is a consequence of the axial ligation of imidazole. The molecular orbital diagram and key unoccupied molecular orbitals are shown in Figure 5 and Table 2. The unoccupied opposite-spin partner of a half occupied natural orbital reflects the uncompensated spin of the occupied orbital, and thus the unoccupied orbital can be used for the analysis of the bonding. The Fe(III) has a single unpaired d electron of α-spin which results in a localized unoccupied β-spin Fe 3dxz orbital (307β). Note that for these analyses the z-axis is along the Fe—O bond and the x-axis is perpendicular to the O—O bond. Two additional unoccupied α/β-spin orbital pairs exist at higher energy in the Fe 3d manifold (311α, 312α, mixture of 311–313β,32 314β) which correspond to the 3dx2−y2 and 3dz2 of the LS Fe(III). The Cu(II) center has a single unpaired electron of β-spin, which results in an unoccupied α-spin Cu 3dx2−y2 orbital (307α). These Fe 3dxz and Cu 3dx2−y2 are the magnetic orbitals, and productively overlap through the peroxo π* orbital as described below to yield an overall diamagnetic ground state. The magnitude of the coupling between the Fe and Cu centers is calculated from the splitting between the ST = 0 and 1 states using Equation 1.33 Expressed in terms of the Heisenberg-Dirac-van Vleck Hamiltonian, −2JS1•S2, the magnitude of the antiferromagnetic exchange parameter was calculated to be J = −611 cm−1.
(1) |
Table 2.
orbital | level | occ | E(eV) | Fe | O2 | Cu | rest | |
---|---|---|---|---|---|---|---|---|
307α | Cu x2–y2 − O2 | 0 | −5.131 | 6.1 | 29.3 | 42.7 | 21.8 | |
311α | Fe z2 − O2 | 0 | −3.418 | 59.4 | 11.6 | 0.7 | 28.3 | |
312α | Fe x2–y2 | 0 | −3.414 | 60.7 | 6.7 | 0.4 | 28.3 | |
307β |
|
0 | −4.965 | 39.8 | 32.3 | 2.4 | 25.5 | |
311β |
|
0 | −3.217 | 14.6 | 3.8 | 0.1 | 81.5 | |
312β |
|
0 | −3.203 | 31.1 | 8.0 | 0.2 | 60.7 | |
313β |
|
0 | −3.198 | 18.4 | 4.7 | 0.1 | 76.8 | |
314β | Fe x2–y2 | 0 | −3.102 | 65.1 | 0.0 | 0.0 | 34.9 | |
spin density | 0.63 | 0.12, −0.10 | −0.41 |
The magnitude of the antiferromagnetic exchange coupling constant in HSAN between the high-spin Fe(III) and Cu(II) centers, calculated from the splitting between the ST = 2 and 3 states (−6J), was previously determined to be J = −759 cm−1.29 In order to quantitatively compare the exchange interaction between LSAN and HSAN, J must be expressed in terms of a sum of the individual magnetic orbital pathway contributions (Equation 2) where nA and nB are the total number of unpaired electrons on the two metal centers, A and B, distributed over their respective 3d orbitals (i and j).34 As reported previously for HSAN,29 a single efficient (out of five possible) superexchange pathway exists between the five 3d orbitals on the Fe(III) and the single 3d orbital on the Cu(II) (the Fe 3dxz and the Cu 3dx2−y2 orbitals interact), and its contribution to the total J value is scaled by a factor of 1/5 (nA = 5, nB = 1, in Equation 2). A single pathway exists in LSAN between the Cu 3dx2−y2 and the Fe 3dxz and based on Equation 2 with nA = nB = 1, it is considerably less efficient relative to HSAN. The difference in efficiency is a result of the difference in core geometries between LSAN and HSAN. In HSAN, the side-on μ-η2:η2 peroxo core geometry allows for much better overlap between the respective Fe/Cu magnetic orbitals compared to the end-on μ-1,2 geometry for LSAN, the specific basis of which is explored below.
(2) |
2.2.3. Excited States
The absorption spectrum of LSAN (Figure 4) is dominated by the heme spectral features. Nonetheless, a relatively weak band is observed at 789 nm which is profiled by the νFe—O and the νO—O modes in the resonance Raman spectrum and thus assigned as a peroxo → Fe CT. To obtain quantitative insight into the origin of this feature, time-dependent (TD)-DFT calculations were performed on LSAN within the unrestricted formalism using the B3LYP functional on the BP86 optimized model. The B3LYP functional was selected based on the best correlation to the data.35 An absorption spectrum was simulated by assuming that each transition gives rise to a Gaussian band shape with a full-width at half maximum of 3000 cm−1 (Figure 6).
TD-DFT predicts two low-energy transitions at 7637 cm−1 (1309 nm) and 12894 cm−1 (776 nm), along with several transitions at higher energy (Table S2). As is evident from inspection of the electron density difference maps (EDDMs) in Figure 6, and analysis of the donor and acceptor orbitals, both transitions are peroxo LMCT in nature. An EDDM is calculated by evaluating the electron density difference (EDD, Equation 3) over space, where the Ψa and Ψd are the acceptor and donor orbital transition components evaluated at a point in space and c is the transition component coefficient, summed over all transition components i. The lowest energy transition (Table 3 and Figure 7) is the excitation based on the donor (306a) and acceptor (309a) orbitals (i.e. excitation of an electron from the peroxo-Cu σ-bonding MO to its σ-antibonding counterpart). This predicted transition is correlated to a low energy absorption feature experimentally observed at 951 nm (10515 cm−1, Figure 4) suggestive of an assignment; however, the experimental feature is too low in energy to probe via resonance Raman spectroscopy. The higher energy transition has two orbital components (306β to 307β and 306β to 309β) in which the donor (306β) is the orbital (Table 3, Figure 7). The acceptors are formally assigned as a porphyrin and Fe 3dxz MO, respectively, based on their populations. However, due to coincidental near degeneracy these orbitals are mixed. Specifically, the 307β MO contains 8.7 % Fe, 9.8 % , and 80.1% porphyrin character and the 309β MO is composed of 62.6 % Fe, 12.6 % , and 23.0 % porphyrin. Thus, the 12894 cm−1 transition is assigned as the transition (i.e. excitation of an electron from the peroxo-Fe π-bonding MO to its π-antibonding counterpart), which compares well with the experimentally determined peroxo → Fe CT at 789 nm (12674 cm−1). This assignment is consistent with the lack of porphyrin vibrations and the lack of enhancement of a νCu—O vibration in the resonance Raman spectrum upon excitation into this absorption envelope as described below.
(3) |
Table 3.
orbital | level | occ | E(eV) | Fe | O2 | Cu | rest | |
---|---|---|---|---|---|---|---|---|
302α |
|
1 | −7.807 | 14.8 | 18.0 | 4.9 | 62.3 | |
303α |
|
1 | −7.584 | 25.3 | 39.6 | 9.8 | 25.4 | |
306α |
|
1 | −6.783 | 6.0 | 79.1 | 7.6 | 7.3 | |
309α |
|
0 | −3.974 | 4.2 | 23.8 | 48.9 | 23.0 | |
317α |
|
0 | −2.187 | 62.8 | 16.1 | 1.5 | 19.6 | |
302β |
|
1 | −7.427 | 45.9 | 10.5 | 5.3 | 38.3 | |
303β |
|
1 | −7.207 | 18.5 | 47.2 | 11.9 | 22.5 | |
306β |
|
1 | −6.785 | 13.7 | 67.4 | 3.3 | 15.6 | |
307β | Por | 0 | −4.265 | 8.7 | 9.8 | 0.3 | 81.3 | |
309β |
|
0 | −3.306 | 62.6 | 12.6 | 0.2 | 24.6 | |
319β |
|
0 | −1.815 | 68.8 | 13.5 | 0.2 | 17.5 | |
spin density | 0.83 | 0.10, −0.19 | 0.52 |
2.2.4. Excited State Distortions
TD-DFT calculations were performed on LSAN to predict the excited state distortions (and thus resonance enhancements in the Raman spectrum) of the normal modes ν167, ν131, ν109, and ν88 (νO—O, νFe—O, νCu—O, and δNIm—Fe—O respectively, see Table 4 and Section 2.2.1.) to evaluate the assignment of the trans-axial bend (δNIm—Fe—O) at 394 cm−1 and to rationalize the lack of a copper-peroxo stretch (νCu—O) upon excitation into the charge transfer transition. The computational distortions were obtained by systematically varying the ground state geometry of LSAN in the positive and negative directions along the respective normal mode, and performing a TD-DFT calculation to determine the resulting change in the CT transition energy. The calculations provide a value for , the excited state distorting force along mode Qk, where ΔE is the change in the excitation energy and ΔQk is the dimensionless nuclear distortion parameter of the kth normal mode. The value is equivalent to a first order electron-nuclear coupling term when the distortion from the equilibrium geometry is small.
Table 4.
ν88 (δNIm—Fe—O) | ν109 (νCu—O) | ν131 (νFe—O) | ν167 (νO—O) | |||||
---|---|---|---|---|---|---|---|---|
O2→Cu | O2→Fe | O2→Cu | O2→Fe | O2→Cu | O2→Fe | O2→Cu | O2→Fe | |
(erg•1012) | 0.082 | −1.184 | −0.429 | 0.137 | 1.588 | 2.820 | 0.710 | 1.139 |
kcalc (mDyn/Å) | 0.797 | 0.749 | 1.789 | 4.17 |
The energy of the calculated CT transition (Table 4 and Figure 8) was significantly altered when the molecular geometry was stepped along the νO—O, νFe—O, and δNIm—Fe—O modes, indicating large excited state distortions (1.139, 2.820, −1.184 erg × 1012, respectively). In contrast, the CT energy perturbation by distortion along the νCu—O mode is minimal indicating a very small excited state distortion along this mode (0.137 erg × 1012). Thus, excitation into the CT transition is expected to produce little if any resonance Raman intensity for the νCu—O mode, consistent with experiment. The excited state distortion forces were also calculated for the CT transition predicted at 7627 cm−1. Excitation into this band would lead to enhancement of the νCu—O, νO—O, and νFe—O modes, and little (if any) enhancement of the δNIm—Fe—O mode.
2.3. Electronic Structure Calculations: Nature of Bonding
2.3.1. The Fe-peroxo bond
The composition and assignment of key unoccupied molecular orbitals are given in Table 2 and are graphically depicted in the diagram in Figure 5 (key occupied molecular orbitals are given in Table S1). Upon binding to Fe, the doubly degenerate fully occupied peroxo π* orbitals split into and the where the z-axis is along the Fe—O vector and the is in the Fe—O—O plane. Both the and the contribute to the bond with the Fe in LSAN. The dominant interaction is of σ-bonding character and consists of donation from the filled of the peroxo (299α and 304β) into the unoccupied Fe dz2 (the unoccupied spin-up dz2 mixes into 311α–312α, and the unoccupied spin-down dz2 mixes into 311β–313β). The second significant interaction which is of π-bonding character is the donation of the filled of the peroxo (303β) into the half-occupied Fe dxz orbital (307β). These interactions between the and the Fe(III) lead to a net very covalent bond, as quantified by the mixing of character into the unoccupied Fe d orbitals. In the spin-up σ-antibonding orbital ( , 311α), the contributions are 59.4 % Fe and 11.6 % , and in the spin-down partner (mixture of 311β–313β), 64.1 % Fe and 16.5 % . The π-antibonding orbital ( , 307β) is composed of 32.3 % and 39.8 % Fe.
The Fe-peroxo interaction in LSAN is significantly more covalent than that found for HSAN. Quantitatively, the σ and π bonding in HSAN consist of a single peroxo donor interaction with a half occupied Fe d orbital in which the anti-bonding orbital contributions are 18.5 % for σ and 13.4 % for π. As described above, the peroxo total σ and π donor contributions for LSAN are 28.1 % and 32.3 % respectively. The increase in Fe-peroxo covalency of LSAN results from: 1) the LS Fe(III) electronic structure that leads to a lack of repulsion in the σ-bonding framework because the Fe 3dz2 is unoccupied, and 2) a strong π donor bonding interaction between the peroxo π* orbital and the Fe due to the shorter Fe-O distance (LSAN = 1.82 Å; HSAN = 2.06, 1.90). The increased Fe-peroxo covalency of LSAN significantly impacts the O—O bond relative to HSAN due to the nature of the peroxo donor orbitals that are π anti-bonding with respect to the O—O bond. A stronger Fe—O bond would be expected to strengthen the O—O bond. A strengthening of the O—O bond in LSAN is reflected in the shorter O—O bond distance (1.40 Å) compared to that of HSAN (1.47 Å). However, this correlation is complicated by differences in Cu bonding (side-on versus end-on) which dominates the O—O bond strength for HSAN and is considered further below.
2.3.2. The Cu-peroxo bond
The composition and assignments of key unoccupied molecular orbitals are given in Table 2 and are graphically depicted in the diagram in Figure 5 (key occupied molecular orbitals are given in Table S1). The Cu—peroxo bonding in LSAN is dominated by a single interaction of σ character. This interaction consists of donation from the filled into the singly occupied Cu 3dx2−y2 orbital (307α). The interaction is also very covalent, with 29.3 % of character mixed into the spin-up Cu based hole (307a). The contribution is a mixture of orbital components (19.7 % and 9.4 % respectively),36 as a result of maximizing overlap between the and the Cu 3d hole, which is dictated by the Fe—O—O—Cu dihedral angle competing against the sterics of the ligand scaffold (see below).
The magnitude of the Cu-peroxo donor interactions in LSAN and HSAN are similar. In HSAN, in which the interacts with the Cu 3dx2−y2, the Cu based hole is composed of 41.4 % Cu and 29.6 % O2 character.29 Thus, despite the fact that in HSAN the peroxo is bound η2 rather than η1 as in LSAN, the Cu-peroxo covalencies are equivalent. While the σ-donor covalencies are similar in magnitude, the side-on geometry of HSAN allows for a backbonding interaction between Cu and , in which a filled Cu d orbital contributes electron density into the antibonding orbital (see reference29 for details). This backbonding is not present in LSAN due to the η1 peroxo coordination to the Cu.
2.3.3. Dependence of the ground state on Fe—O—O—Cu dihedral angle
A relaxed potential energy scan was performed on LSAN with the BP86 functional to assess the behavior of the singlet and triplet PES along the Fe—O—O—Cu coordinate. Calculations using the B3LYP functional and performed in an analogous manner qualitatively reproduce the results of the BP86 calculations. The Fe—O—O—Cu dihedral angle of LSAN was distorted in 5° increments from 135° to 180°, and the remaining geometric parameters were allowed to relax on the triplet surface. Single point energies on the BS (ST = 0) surface were performed at each point and spin projected (Figure 9) to allow comparison between the energies of the singlet and triplet surfaces. At Fe—O—O—Cu dihedral angles less than ~150°, the calculations predict the singlet to be lower in energy. In contrast, at dihedral angles above ~150°, the triplet state is predicted to be lowest in energy. Consequently, DFT calculations predict minima on the triplet and BS surface which vary in the Fe—O—O—Cu dihedral angle, with minimum energy values at ~155° and ~140° respectively.
An angular overlap model can be used to describe the spin state dependence on the Fe—O—O—Cu dihedral angle. In the planar Fe—O—O—Cu dihedral limit (180°, Figure 10, right), the interacts with the singly occupied Cu dx2−y2 and the unoccupied Fe 3dz2 orbitals, and the orthogonal orbital interacts with the Fe 3dxz. In this case, the magnetic orbitals (Fe 3dxz and Cu 3dx2−y2) are orthogonal, resulting in a ferromagnetically coupled electronic configuration. As the Fe—O—O—Cu dihedral angle distorts away from planar, the Cu 3dx2−y2 overlap with the decreases and overlap with the increases. In the 90° limit (not accessible in LSAN due to sterics) the Cu 3dx2−y2 would interact exclusively with the (Figure 10 left). The also interacts with the singly occupied Fe 3dxz orbital, and thus there is overlap of the magnetic orbitals that results in an antiferromagnetically coupled ground state for dihedral angles < ~150°. Note that the low efficiency of superexchange in LSAN compared to HSAN as quantified by a smaller J reflects the decreased overlap with the peroxo as a result of the Fe—O—O—Cu dihedral angle of 137°, as the peroxo is the only pathway in LSAN that can allow for superexchange between the half-occupied Fe and Cu orbitals. In contrast, the Fe—O—O—Cu dihedral has minimal impact on the superexchange in HSAN because both overlap with magnetic orbitals on the Fe and thus are effective pathways.
3. Discussion
Impact of Heme Spin State on the O—O Bond and Correlation to Non-Heme Iron
To assess the impact of the spin state of the heme on the peroxo moiety in heme-peroxo-copper complexes, three species were compared (LSAN, HSAN, and {[(F8)Fe]-O2-[Cu(TMPA)]}+, (HSTMPA)). These three complexes are spectroscopically well-characterized and DFT structures are available wherein the peroxo group bridges the metals in a μ-1,2, μ-η2: η2, and μ-η2:η1 fashion respectively (Figure 3). The DFT calculated O—O bond lengths are used as a probe of the bonding within the peroxo group. Previously, we described the affect of η2 coordination of peroxo to copper in HSAN. In this configuration, backbonding from the Cu d manifold into the significantly weakens the O—O bond, and is reflected in a long (1.47 Å) O—O bond length. In both HSTMPA and HSAN the peroxo is coordinated η2 to Fe, and the Fe—O bonds lengths are the same. However, HSTMPA has η1 coordination to Cu and thus no backbonding, which results in significantly shorter O—O bond length (1.43 Å) in HSTMPA. LSAN has the shortest calculated O—O bond length (1.40 Å), indicating LSAN has a significantly stronger O—O bond than both HSAN and HSTMPA.
To achieve a stronger O—O bond in LSAN, the peroxo group must be a better donor to the Fe, which is strongly modulated by the spin of the heme. Upon binding the axial base, the Fe eg orbitals are destabilized as the Fe is pulled into the porphyrin plane. The Fe dz2 is destabilized by virtue of having an additional axial donor interaction, and the Fe dx2−y2 orbital is strongly destabilized by more efficient interaction with the porphyrin, which together result in a low-spin heme ground state in LSAN. The low-spin ground state of the heme yields a significantly more covalent Fe-peroxo interaction in LSAN due to lack of the electron-electron repulsion between the and Fe dz2. This stronger Fe—O interaction leads to a stronger O—O bond, due to nature of the peroxo donor orbital which is anti-bonding with respect to the O—O bond.
The correlation of a more covalent Fe—O interaction in the LS heme of LSAN leading to a stronger O—O bond is opposite of the behavior observed in non-heme iron, in which a more covalent Fe—O in LS adducts results in a weaker O—O bond.31,37 In HS and LS non-heme iron complexes, the π bonding contributions are of similar magnitude, and the bonding differences are found in the σ bonding framework. Specifically, in non-heme iron the valence orbitals of the Fe are of appropriate energy to potentially interact with the in-plane π* or π orbitals of the peroxo. Upon going from HS to LS in non-heme Fe, the peroxo donor contribution to the Fe-O σ bonding shifts from π* to πb in character. In contrast, upon going from HS to LS in heme, where the ligand field of the porphyrin in the LS case strongly destabilizes the Fe eg orbitals, a bonding interaction with the in-plane πb of the peroxo is not available. The general result obtained here for HS to LS correlation in heme versus non-heme iron has important implications for reactivity of a putative peroxo level intermediate in CcO. Namely, the putative LS peroxo-heme intermediate would have a strong O—O bond that would disfavor O—O bond homolysis. A strong O—O bond in LS peroxo-heme indicates a less reduced peroxo moiety, which would suggest a more electrophilic reactivity behavior, consistent with the possibility of net H-atom abstraction from the active site tyrosine as is proposed to generate the consensus tyrosyl radical in CcO intermediate state PM.
Magneto-Structural Correlation of LSAN
The singly occupied orbital on the Fe in LSAN is of 3dxz character (where the O—O vector defines the y axis), as a result of the π donor interaction with the peroxo orbital. To achieve an efficient superexchange pathway, the Fe—O—O—Cu dihedral angle is torsionally distorted to maximize the overlap between the magnetic orbitals on the metals, for which there is an energetic advantage (calculated to be 2.2 kcal/mol with BP86), consistent with the observed diamagnetism of LSAN. Specifically, since the magnetic orbital on the Fe is 3dxz and interacts with the peroxo , the singly occupied orbital on the Cu must also interact with the to participate in a magnetic exchange interaction. A planar core (Figure 10, right) would result in the magnetic orbital on the Cu interacting with the peroxo , an orbital which donates into the unoccupied Fe 3dz2. Under this scenario, the magnetic orbitals on the Cu and Fe would be orthogonal, and thus ferromagnetically coupled. This possibility of ferromagnetic coupling can only exist when the Fe is LS, as any Fe—O—O—Cu angle in a HS heme (S = 5/2) would result in the overlap of magnetic orbitals, and an anti-ferromagnetic ground state. The fact that the 1/2 occupied Cu d orbital has 9.4 % and only 19.7 % explains its relatively low J value. The possibility of ferromagnetic coupling for a LS Fe(III)—peroxo—Cu(II) species is potentially important for O—O bond cleavage as described below.
Effect of magnetic coupling on the spin topology of O—O bond rupture
We and others have hypothesized the involvement of an unobserved, intermediate peroxo moiety during CcO catalysis. Due to the architecture of the CcO active site, namely the distance between the heme a3 and the CuB that has been crystallographically determined as > 4.5 Å, a putative end-on bridging peroxo intermediate would be expected to adopt an Fe—O—O—Cu dihedral angle > 150° in order to span the metals. From Figure 9, this would be within the ferromagnetic regime developed for LSAN. Ferromagnetic coupling in such a putative species could impart a significant functional role, namely, the ability to cleave the O—O bond without a spin surface crossing.
Cleavage of the peroxo O—O bond requires two electrons. A μ-1,2 peroxo bridged state could be either anti-ferromagnetic or ferromagnetic coupled (Figure 11 left), with ST = 0 or 1 respectively, as a consequence of coupling between the LS ferric heme (S = ½) and the Cu(II) ion (S = ½). The final state, PM, consists of an Fe(IV)=O (S = 1), a Cu(II)-OH (S = ½) and a Tyr244• (S = ½). The spectroscopic data of PM suggests the Cu(II)-OH and Tyr244• are anti-ferromagnetically coupled.38 Thus, the final two electrons required to cleave the peroxo O—O bond would come from the Fe(III) (to generate the Fe(IV)=O) and the Tyr244 (to generate a Tyr244• radical). These two electrons are accepted by the peroxo σ* orbital, and hence must be of opposite spin. In order to generate an S = 1 Fe(IV)=O, wherein the singly occupied orbitals are of 3dxz and 3dyz character, the electron that originates from the Fe 3dyz and is accepted by the peroxide σ* is spin-down. The second electron that comes from the Tyr, therefore, must be spin-up. In a situation where the Cu and Fe in the putative peroxo intermediate are antiferromagnetically coupled, the removal of a spin-up electron from the Tyr would result in an electronic configuration where the unpaired electrons in both the CuII and Tyr• would be spin-down (Figure 11 top right) and would necessitate a spin-surface crossing to access the final anti-ferromagnetic state for Tyr• and CuII in PM. In contrast, in a situation where the Cu and Fe in the putative peroxo intermediate are ferromagnetically coupled (Figure 11 bottom left), removal of a spin-up electron from Tyr would result in an unpaired spin-down electron on Tyr•, and thus the final anti-ferromagnetically coupled Cu(II)-Tyr• state would be reached without a surface crossing. The anti-ferromagnetic coupling of the Tyr• with the Cu(II) reflects an efficient superexchange pathway, which in turn means overlap of the redox active molecular orbitals. The overlap of these orbitals is a necessary condition for facile electron transfer of the fourth and final electron from the crosslinked Tyr through the copper to cleave the O—O bond. Current studies (both chemical and computational) are underway to develop further quantitative insight into the mechanism of O—O bond cleavage in LSAN and its relation to O—O bond cleavage by CcO where the Tyr is covalently tethered to the Cu bound His ligand.
5. Experimental Methods
Resonance Raman
Samples were prepared by exposure of a 1 mM solution of [(F8)Fe(II)] and [(AN)Cu(I)]B(C6F5)4 in THF to dioxygen at subambient temperatures (−80°C) in 5 mm rubber septa capped NMR tubes. DCHIm (1eq) was added and the tube was flame sealed. Isotopically labelled (18O2) samples were prepared with 18O2 in an analogous manner. Samples were excited at a variety of wavelengths, using either a Coherent I90C-K Kr+ ion laser, a Coherent 25/7 Sabre Ar+ ion laser, or an Ar+ pumped Coherent Ti:Saph laser while the sample was immersed in a liquid nitrogen cooled (77 K) EPR finger dewar (Wilmad). The power was ~2 mW at the sample for the high energy lines and >200 mW at the low energy lines. Data were recorded while rotating the sample to minimize photodecomposition. The spectra were recorded using a Spex 1877 CP triple monochromator with either a 600, 1200, or 2400 groves/mm holographic spectrograph grating, and detected by an Andor Newton CCD cooled to −80° C (for high energy excitation) or an Andor IDus CCD cooled to −80°C (for the low energy excitation). Spectra were calibrated on the energy axis to toluene. Excitation profiles were intensity calibrated to the solvent (THF) by peak fitting in the program Origin.
Calculations
Density functional theory (DFT) calculations were performed using Gaussian03.39 The optimized molecular structure of LSAN, HSAN, and HSTMPA have been reported previously (with cyclohexyl rings truncated to methyl groups in the case of LSAN), in which the molecular structures were optimized using the BP86 functional within the spin-unrestricted formalism.26 The basis sets employed on Fe, Cu and O2 were of triple-ζ quality with polarization (6–311g*). A double- ζ quality, split-valence basis was used on all other atoms (6–31g), and was augmented with polarization on the metal bound N atoms (6–31g*). An ultrafine integration grid was employed as was auto density fitting. Due to spin effects on the Fe—O—O—Cu dihedral angle (vide supra), a one dimensional relaxed potential energy surface (1D PES) scan was performed in 5° steps from 135 – 180° using both the BP86 and B3LYP functionals. The scans were performed on the HS surface, then single point energies were calculated on the BS surface. Molecular orbitals, transition densities, and simulated TD absorption spectra were visualized using Lumo.40 Mulliken population analyses were performed using QMForge.41 Vibrational frequency analysis was performed using VEDA4 adapted for large molecules (XL version).42
Supplementary Material
Acknowledgements
These studies were supported by the National Institutes of Health (NIH) (DK031450 to EIS; GM60353 to KDK). MKE is supported by an NIH post-doctoral fellowship (GM085914). Computational resources were provided in part by the NSF through Teragrid resources provided by the NCSA (CHE080054N).
Footnotes
Supporting Information Available. Additional computational output. This material is available free of charge via the Internet at http://pubs.acs.org.
References
- 1.Ferguson-Miller S, Babcock GT. Chem. Rev. 1996;96:2889. doi: 10.1021/cr950051s. [DOI] [PubMed] [Google Scholar]
- 2.Kaila VRI, Verkhovsky MI, Wikström M. Chem. Rev. 2010;110:7062. doi: 10.1021/cr1002003. [DOI] [PubMed] [Google Scholar]
- 3.Tsukihara T, Aoyama H, Yamashita E, Tomizaki T, Yamaguchi H, Shinzawa-Itoh K, Nakashima R, Yaono R, Yoshikawa S. Science. 1996;272:1136. doi: 10.1126/science.272.5265.1136. [DOI] [PubMed] [Google Scholar]
- 4.Iwata S, Ostermeier C, Ludwig B, Michel H. Nature. 1995;376:660. doi: 10.1038/376660a0. [DOI] [PubMed] [Google Scholar]
- 5.Das TK, Pecoraro C, Tomson FL, Gennis RB, Rousseau DL. Biochemistry. 1998;37:14471. doi: 10.1021/bi981500w. [DOI] [PubMed] [Google Scholar]
- 6.Varotsis C, Woodruff WH, Babcock GT. J. Biol. Chem. 1990;265:11131. [PubMed] [Google Scholar]
- 7.Han S, Ching YC, Rousseau DL. Biochemistry. 1990;29:1380. doi: 10.1021/bi00458a006. [DOI] [PubMed] [Google Scholar]
- 8.Han SW, Ching YC, Rousseau DL. Proc. Natl. Acad. Sci. U. S. A. 1990;87:2491. doi: 10.1073/pnas.87.7.2491. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Proshlyakov DA, Ogura T, Shinzawa-Itoh K, Yoshikawa S, Appelman EH, Kitagawa T. J. Biol. Chem. 1994;269:29385. [PubMed] [Google Scholar]
- 10.Iwaki M, Breton J, Rich PR. Biochim. Biophys. Acta. 2002;1555:116. doi: 10.1016/s0005-2728(02)00265-7. [DOI] [PubMed] [Google Scholar]
- 11.Iwaki M, Puustinen A, Wikström M, Rich PR. Biochemistry. 2003;42:8809. doi: 10.1021/bi034522d. [DOI] [PubMed] [Google Scholar]
- 12.Iwaki M, Puustinen A, Wikström M, Rich PR. Biochemistry. 2004;43:14370. doi: 10.1021/bi048545j. [DOI] [PubMed] [Google Scholar]
- 13.Oganesyan VS, White GF, Field S, Marritt S, Gennis RB, Yap LL, Thomson AJ. J. Biol. Inorg. Chem. 2010;15:1255. doi: 10.1007/s00775-010-0683-5. [DOI] [PubMed] [Google Scholar]
- 14.Proshlyakov DA, Pressler MA, DeMaso C, Leykam JF, DeWitt DL, Babcock GT. Science. 2000;290:1588. doi: 10.1126/science.290.5496.1588. [DOI] [PubMed] [Google Scholar]
- 15.Collman JP, Decreau RA, Sunderland CJ. Chem. Commun. 2006:3894. doi: 10.1039/b607277a. [DOI] [PubMed] [Google Scholar]
- 16.Collman JP, Decreau RA, Yan YL, Yoon J, Solomon EI. J. Am. Chem. Soc. 2007;129:5794. doi: 10.1021/ja0690969. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Collman JP, Devaraj NK, Decreau RA, Yang Y, Yan YL, Ebina W, Eberspacher TA, Chidsey CED. Science. 2007;315:1565. doi: 10.1126/science.1135844. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Blomberg MRA, Siegbahn PEM, Babcock GT, Wikström M. J. Inorg. Biochem. 2000;80:261. doi: 10.1016/s0162-0134(00)00080-5. [DOI] [PubMed] [Google Scholar]
- 19.Blomberg MRA, Siegbahn PEM, Wikström M. Inorg. Chem. 2003;42:5231. doi: 10.1021/ic034060s. [DOI] [PubMed] [Google Scholar]
- 20.Proshlyakov DA, Pressler MA, Babcock GT. Proc. Natl. Acad. Sci. U. S. A. 1998;95:8020. doi: 10.1073/pnas.95.14.8020. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Chishiro T, Shimazaki Y, Tani F, Tachi Y, Naruta Y, Karasawa S, Hayami S, Maeda Y. Angew. Chem., Int. Ed. Engl. 2003;42:2788. doi: 10.1002/anie.200351415. [DOI] [PubMed] [Google Scholar]
- 22.Collman JP, Boulatov R, Sunderland CJ, Fu L. Chem. Rev. 2004;104:561. doi: 10.1021/cr0206059. [DOI] [PubMed] [Google Scholar]
- 23.Kim E, Chufan EE, Kamaraj K, Karlin KD. Chem. Rev. 2004;104:1077. doi: 10.1021/cr0206162. [DOI] [PubMed] [Google Scholar]
- 24.Chufan EE, Puiu SC, Karlin KD. Acc. Chem. Res. 2007;40:563. doi: 10.1021/ar700031t. [DOI] [PubMed] [Google Scholar]
- 25.Ghiladi RA, Hatwell KR, Karlin KD, Huang HW, Moënne-Loccoz P, Krebs C, Huynh BH, Marzilli LA, Cotter RJ, Kaderli S, Zuberbühler AD. J. Am. Chem. Soc. 2001;123:6183. doi: 10.1021/ja010602y. [DOI] [PubMed] [Google Scholar]
- 26.del Rio D, Sarangi R, Chufan EE, Karlin KD, Hedman B, Hodgson KO, Solomon EI. J. Am. Chem. Soc. 2005;127:11969. doi: 10.1021/ja043374r. [DOI] [PubMed] [Google Scholar]
- 27.Ghiladi RA, Chufan EE, del Rio D, Solomon EI, Krebs C, Huynh BH, Huang HW, Moënne-Loccoz P, Kaderli S, Honecker M, Zuberbühler AD, Marzilli L, Cotter RJ, Karlin KD. Inorg. Chem. 2007;46:3889. doi: 10.1021/ic061726k. [DOI] [PubMed] [Google Scholar]
- 28.Chufan EE, Mondal B, Gandhi T, Kim E, Rubie ND, Moenne-Loccoz P, Karlin KD. Inorg. Chem. 2007;46:6382. doi: 10.1021/ic700363k. [DOI] [PubMed] [Google Scholar]
- 29.Halime Z, Kieber-Emmons MT, Qayyum MF, Mondal B, Gandhi T, Puiu SC, Chufán EE, Sarjeant AAN, Hodgson KO, Hedman B, Solomon EI, Karlin KD. Inorg. Chem. 2010;49:3629. doi: 10.1021/ic9020993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Kieber-Emmons MT, Qayyum MF, Li Y, Halime Z, Hodgson KO, Hedman B, Karlin KD, Solomon EI. doi: 10.1002/anie.201104080. Submitted. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Lehnert N, Ho RY, Que L, Solomon EI. J. Am. Chem. Soc. 2001;123:12802. doi: 10.1021/ja011450+. [DOI] [PubMed] [Google Scholar]
- 32.The β-spin 3dz2 is mixed with nearby porphoryn orbitals which results in the z2 character spread over 311–313β.
- 33.Yamaguchi K, Jensen F, Dorigo A, Houk KN. Chem. Phys. Lett. 1988;149:537. [Google Scholar]
- 34.Ferguson J, Guggenheim HJ, Tanabe Y. J. Phys. Soc. Jpn. 1966;21:692. [Google Scholar]
- 35.The BP86 functional predicts the porphyrin orbitals at too high in energy, and thus gives non-physical TD results.
- 36.Components were determined by orienting the O—O bond along the y-axis and performing a Mulliken population analysis of the O22− px and pz contributions to 307α.
- 37.Lehnert N, Ho RY, Que L, Solomon EI. J. Am. Chem. Soc. 2001;123:8271. doi: 10.1021/ja010165n. [DOI] [PubMed] [Google Scholar]
- 38.Rich PR, Rigby SE, Heathcote P. Biochim. Biophys. Acta. 2002;1554:137. doi: 10.1016/s0005-2728(02)00228-1. [DOI] [PubMed] [Google Scholar]
- 39.Frisch MJ, et al. Wallingford, CT: Gaussian, Inc.; 2004. [Google Scholar]
- 40.Kieber-Emmons MTLumo. Version 0.9b. Burlingame, CA USA: [Google Scholar]
- 41.Tenderholt AdamLQMForge. Version 2.1. Stanford, CA USA: Stanford University; [Google Scholar]
- 42.Jamroz MH. Veda4XL. Warsaw,Poland: Drug Institute; [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.