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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Nov 9;67(Pt 12):o3226. doi: 10.1107/S1600536811046320

N,N′-Dimethyl-N,N′-bis­(pyridin-2-yl)methane­diamine

Moon-Sun Lee a, Minyoung Yoon b, O-bong Yang c, Dong-Heon Lee a,*, Gyungse Park d,*
PMCID: PMC3238888  PMID: 22199741

Abstract

The title compound, C13H16N4, consists of two pyridine rings which are linked by an N,N′-dimethyl­methane­amine chain. The pyridine rings adopt a twist conformation and the dihedral angle between them is 60.85 (5)°. The crystal packing is stabilized by weak C—H⋯π inter­actions.

Related literature

For the synthesis of the title compound, see: Kahn et al. (1945). For applications of heteroaromatic amines, see: Mehrkhodavandi & Schrock (2001); Hall et al. (1998); Lee (2003).graphic file with name e-67-o3226-scheme1.jpg

Experimental

Crystal data

  • C13H16N4

  • M r = 228.30

  • Monoclinic, Inline graphic

  • a = 11.6652 (7) Å

  • b = 8.3921 (5) Å

  • c = 12.8966 (7) Å

  • β = 106.634 (2)°

  • V = 1209.69 (12) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 100 K

  • 0.12 × 0.08 × 0.08 mm

Data collection

  • Bruker APEXII diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.963, T max = 0.986

  • 27844 measured reflections

  • 2516 independent reflections

  • 2105 reflections with I > 2σ(I)

  • R int = 0.050

Refinement

  • R[F 2 > 2σ(F 2)] = 0.038

  • wR(F 2) = 0.125

  • S = 0.96

  • 2516 reflections

  • 218 parameters

  • All H-atom parameters refined

  • Δρmax = 0.23 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811046320/bx2378sup1.cif

e-67-o3226-sup1.cif (20.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046320/bx2378Isup2.hkl

e-67-o3226-Isup2.hkl (123.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811046320/bx2378Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg1 and Cg2 are the centroids of the N1/C1–C5 and N4/C9–C15 rings, respectively.

D—H⋯A D—H H⋯A DA D—H⋯A
C1—H1⋯Cg2i 0.99 (2) 2.64 (2) 3.484 (1) 143 (1)
C6—H7⋯Cg2ii 1.00 (2) 2.75 (2) 3.545 (2) 137 (1)
C10—H13⋯Cg1iii 0.95 (2) 2.90 (1) 3.637 (1) 135 (1)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

This work was supported by the "Human Resource Development (project name: Advanced track for Si-based solar cell materials and devices, project No. 201040100660)" of the Korea Institute of Energy Technology Evaluation and Planning (KETEP) grant funded by the Korean Government Ministry of Knowledge Economy.

supplementary crystallographic information

Comment

Heteroaromatic amines based metal complexes have been extensively studied due to their numerous potential applications as catalysts, drugs, biomimetic chemistry, and so on. (Mehrkhodavandi, et al., (2001) , Hall, et al.,(1998), Lee, (2003). We are interested in the use of chelates containing pyridylamine. We report here the crystal structure of the title compound, Fig. 1, which consists of two 2-pyridyl rings which are linked together by a N,N'-dimethylmethaneamine chain .The pyridine rings adopt a twist conformation and the dihedral angle between them is 60.85 (5)°. The crystal packing is stabilized by weak C—H···π interactions, Fig. 2, Table 1.

Experimental

N,N'-dimethyl-N,N'-di(pyridin-2-yl)methanediamine was prepared by a reported method, Kahn, et al., (1945). A solution of 2-(methylamino)pyridine (5.00 g, 4.62 × 10 -2 mol) in water (50 ml) was added dropwise to 37% formaldehyde solution (1.83 ml, 2.31 × 10-2 mol) at 0°C. The reation mixture was stirred at room temperature for overnight and the white precipitate formed was filtered,washed with water and dried. It was dissolved in acetone, dried over MgSO4 and concentrated. It was recrystallized in acetonitrile. Yield: 92% (4.88 g)

Refinement

All H atoms were geometrically positioned and refined using a riding model, with C—H = 0.95 Å for the aryl, 0.99 Å for the methylene, and 0.00 Å for the methyl H atoms, respectively, and with Uiso(H) = 1.2Ueq(C) for the aryl and methylene H atoms, and 1.5Ueq(C) for the methyl H atoms.

Figures

Fig. 1.

Fig. 1.

A view of the title compound showing the labelling of the atoms. Displacement ellipsoids are shown at the 50% probability level.

Fig. 2.

Fig. 2.

Part of the crystal structure of (I) showing the formation of a C—H···π interactions.

Crystal data

C13H16N4 F(000) = 488
Mr = 228.30 Dx = 1.254 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P2yn Cell parameters from 2516 reflections
a = 11.6652 (7) Å θ = 2.1–26.5°
b = 8.3921 (5) Å µ = 0.08 mm1
c = 12.8966 (7) Å T = 100 K
β = 106.634 (2)° Rod, colourless
V = 1209.69 (12) Å3 0.12 × 0.08 × 0.08 mm
Z = 4

Data collection

Bruker APEXII diffractometer 2105 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.050
graphite θmax = 26.5°, θmin = 2.1°
θ/2φ scans h = −14→14
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) k = −10→10
Tmin = 0.963, Tmax = 0.986 l = −16→14
27844 measured reflections 4 standard reflections every 30 min
2516 independent reflections intensity decay: 0.0%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125 All H-atom parameters refined
S = 0.96 w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
2516 reflections (Δ/σ)max < 0.001
218 parameters Δρmax = 0.23 e Å3
0 restraints Δρmin = −0.21 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.43474 (8) 0.22148 (11) 0.82931 (7) 0.0194 (3)
N2 0.61745 (8) 0.11262 (11) 0.82658 (8) 0.0203 (3)
N3 0.59838 (8) −0.15394 (11) 0.89105 (8) 0.0189 (3)
N4 0.79220 (8) −0.22454 (12) 0.98754 (7) 0.0182 (3)
C1 0.34526 (10) 0.32394 (15) 0.78856 (9) 0.0211 (3)
C2 0.33876 (11) 0.42500 (14) 0.70242 (9) 0.0214 (3)
C3 0.43186 (10) 0.41792 (14) 0.65514 (9) 0.0200 (3)
C4 0.52555 (10) 0.31431 (14) 0.69472 (9) 0.0173 (3)
C5 0.52473 (10) 0.21664 (13) 0.78366 (9) 0.0160 (3)
C6 0.71691 (12) 0.09942 (17) 0.78056 (12) 0.0272 (3)
C7 0.62117 (10) 0.01339 (13) 0.91939 (9) 0.0173 (3)
C8 0.47475 (11) −0.19594 (16) 0.83643 (11) 0.0240 (3)
C9 0.67862 (10) −0.27049 (13) 0.94043 (8) 0.0163 (3)
C10 0.64315 (11) −0.43154 (14) 0.93928 (9) 0.0205 (3)
C11 0.72811 (12) −0.54307 (15) 0.98755 (9) 0.0248 (3)
C12 0.84533 (12) −0.49686 (15) 1.03581 (9) 0.0255 (3)
C13 0.87199 (11) −0.33721 (14) 1.03368 (9) 0.0221 (3)
H1 0.2816 (13) 0.3259 (16) 0.8256 (12) 0.031 (4)*
H2 0.2701 (12) 0.4955 (17) 0.6790 (10) 0.029 (4)*
H3 0.4313 (12) 0.4841 (17) 0.5946 (11) 0.028 (4)*
H4 0.5883 (13) 0.3065 (16) 0.6629 (11) 0.025 (3)*
H5 0.7601 (15) 0.201 (2) 0.7856 (14) 0.048 (5)*
H6 0.7696 (15) 0.022 (2) 0.8232 (13) 0.047 (4)*
H7 0.6898 (15) 0.059 (2) 0.7046 (14) 0.045 (4)*
H8 0.5576 (11) 0.0536 (14) 0.9520 (10) 0.018 (3)*
H9 0.6997 (13) 0.0194 (15) 0.9712 (11) 0.023 (3)*
H10 0.4350 (13) −0.1019 (18) 0.8023 (12) 0.032 (4)*
H11 0.4723 (12) −0.2806 (19) 0.7818 (13) 0.035 (4)*
H12 0.4316 (13) −0.2327 (17) 0.8900 (12) 0.033 (4)*
H13 0.5616 (13) −0.4628 (16) 0.9100 (11) 0.028 (4)*
H14 0.7042 (13) −0.6532 (18) 0.9862 (12) 0.032 (4)*
H15 0.9091 (13) −0.5706 (18) 1.0696 (11) 0.033 (4)*
H16 0.9557 (12) −0.3009 (15) 1.0693 (11) 0.021 (3)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0190 (5) 0.0203 (5) 0.0189 (5) 0.0021 (4) 0.0054 (4) 0.0009 (4)
N2 0.0208 (5) 0.0187 (5) 0.0239 (5) 0.0052 (4) 0.0102 (4) 0.0059 (4)
N3 0.0177 (5) 0.0145 (5) 0.0211 (5) −0.0003 (4) 0.0003 (4) 0.0002 (4)
N4 0.0185 (5) 0.0185 (5) 0.0166 (5) 0.0017 (4) 0.0035 (4) 0.0008 (4)
C1 0.0178 (6) 0.0235 (6) 0.0218 (6) 0.0025 (5) 0.0051 (5) −0.0018 (5)
C2 0.0200 (6) 0.0186 (6) 0.0218 (6) 0.0038 (5) −0.0002 (5) −0.0010 (5)
C3 0.0260 (6) 0.0146 (6) 0.0170 (6) −0.0035 (5) 0.0021 (5) 0.0005 (4)
C4 0.0186 (6) 0.0159 (6) 0.0177 (6) −0.0029 (4) 0.0055 (5) −0.0019 (4)
C5 0.0178 (6) 0.0133 (6) 0.0162 (5) −0.0015 (4) 0.0037 (4) −0.0029 (4)
C6 0.0236 (7) 0.0254 (7) 0.0363 (8) 0.0077 (6) 0.0145 (6) 0.0075 (6)
C7 0.0197 (6) 0.0149 (6) 0.0159 (6) 0.0004 (5) 0.0030 (5) 0.0000 (4)
C8 0.0196 (6) 0.0204 (7) 0.0274 (7) −0.0006 (5) −0.0007 (5) −0.0002 (5)
C9 0.0208 (6) 0.0172 (6) 0.0120 (5) 0.0008 (5) 0.0063 (4) 0.0005 (4)
C10 0.0254 (7) 0.0185 (6) 0.0178 (6) −0.0024 (5) 0.0067 (5) −0.0015 (4)
C11 0.0400 (8) 0.0151 (6) 0.0208 (6) 0.0022 (5) 0.0111 (6) 0.0001 (5)
C12 0.0342 (7) 0.0219 (6) 0.0202 (6) 0.0119 (5) 0.0072 (5) 0.0039 (5)
C13 0.0224 (6) 0.0258 (7) 0.0173 (6) 0.0063 (5) 0.0044 (5) 0.0011 (5)

Geometric parameters (Å, °)

N1—C1 1.3382 (15) C4—H4 0.938 (15)
N1—C5 1.3431 (15) C6—H5 0.983 (17)
N2—C5 1.3769 (15) C6—H6 0.951 (18)
N2—C7 1.4485 (14) C6—H7 0.998 (17)
N2—C6 1.4508 (15) C7—H8 1.010 (13)
N3—C9 1.3773 (15) C7—H9 0.968 (14)
N3—C8 1.4556 (15) C8—H10 0.957 (16)
N3—C7 1.4563 (15) C8—H11 0.996 (16)
N4—C13 1.3406 (15) C8—H12 1.012 (16)
N4—C9 1.3463 (15) C9—C10 1.4123 (16)
C1—C2 1.3823 (17) C10—C11 1.3756 (17)
C1—H1 0.992 (15) C10—H13 0.954 (14)
C2—C3 1.3907 (17) C11—C12 1.3858 (19)
C2—H2 0.972 (14) C11—H14 0.964 (15)
C3—C4 1.3753 (17) C12—C13 1.3775 (18)
C3—H3 0.957 (15) C12—H15 0.969 (15)
C4—C5 1.4121 (16) C13—H16 1.001 (14)
C1—N1—C5 117.83 (10) H6—C6—H7 108.0 (13)
C5—N2—C7 122.07 (9) N2—C7—N3 112.76 (9)
C5—N2—C6 120.81 (10) N2—C7—H8 107.5 (7)
C7—N2—C6 117.12 (9) N3—C7—H8 108.9 (7)
C9—N3—C8 119.99 (10) N2—C7—H9 109.8 (8)
C9—N3—C7 121.18 (9) N3—C7—H9 107.0 (8)
C8—N3—C7 116.06 (10) H8—C7—H9 111.0 (10)
C13—N4—C9 117.83 (10) N3—C8—H10 107.8 (9)
N1—C1—C2 124.54 (11) N3—C8—H11 109.9 (8)
N1—C1—H1 115.4 (8) H10—C8—H11 110.5 (12)
C2—C1—H1 120.0 (8) N3—C8—H12 111.2 (8)
C1—C2—C3 117.13 (11) H10—C8—H12 107.2 (12)
C1—C2—H2 118.3 (8) H11—C8—H12 110.2 (13)
C3—C2—H2 124.6 (8) N4—C9—N3 117.13 (10)
C4—C3—C2 120.11 (11) N4—C9—C10 121.76 (10)
C4—C3—H3 119.2 (9) N3—C9—C10 121.10 (10)
C2—C3—H3 120.7 (9) C11—C10—C9 118.39 (11)
C3—C4—C5 118.62 (11) C11—C10—H13 119.9 (9)
C3—C4—H4 121.2 (9) C9—C10—H13 121.6 (8)
C5—C4—H4 120.1 (9) C10—C11—C12 120.22 (12)
N1—C5—N2 117.75 (10) C10—C11—H14 118.5 (9)
N1—C5—C4 121.76 (10) C12—C11—H14 121.3 (9)
N2—C5—C4 120.49 (10) C13—C12—C11 117.55 (11)
N2—C6—H5 111.2 (10) C13—C12—H15 118.8 (9)
N2—C6—H6 106.0 (10) C11—C12—H15 123.7 (9)
H5—C6—H6 108.4 (14) N4—C13—C12 124.25 (12)
N2—C6—H7 111.2 (10) N4—C13—H16 116.8 (7)
H5—C6—H7 111.7 (14) C12—C13—H16 118.9 (7)

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the N1/C1–C5 and N4/C9–C15 rings, respectively.
D—H···A D—H H···A D···A D—H···A
C1—H1···Cg2i 0.99 (2) 2.64 (2) 3.484 (1) 143 (1)
C6—H7···Cg2ii 1.00 (2) 2.75 (2) 3.545 (2) 137 (1)
C10—H13···Cg1iii 0.95 (2) 2.90 (1) 3.637 (1) 135 (1)

Symmetry codes: (i) −x+1, −y, −z+2; (ii) −x+3/2, y+1/2, −z+3/2; (iii) x, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BX2378).

References

  1. Brandenburg, K. & Putz, H. (2005). DIAMOND Crystal Impact, Bonn, Germany.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Hall, J., Haner, R., Aime, S., Botta, M., Faulkner, S., Parker, D. & de Sousa, S. S. (1998). New J. Chem. pp. 627–631.
  4. Kahn, H. J., Petrow, V. A., Wien, R. & Harrison, J. (1945). J. Chem. Soc. pp. 858–861 [DOI] [PubMed]
  5. Lee, D.-H. (2003). J. Kor. Chem. Soc. 47, 427–431.
  6. Mehrkhodavandi, P. & Schrock, R. R. (2001). J. Am. Chem. Soc 123, 10746–10747. [DOI] [PubMed]
  7. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  8. Sheldrick, G. M. (2008). Acta Cryst A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811046320/bx2378sup1.cif

e-67-o3226-sup1.cif (20.5KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046320/bx2378Isup2.hkl

e-67-o3226-Isup2.hkl (123.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811046320/bx2378Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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