Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1980 Nov 11;8(21):5057–5070. doi: 10.1093/nar/8.21.5057

Ribonucleotide sequences non-adjacent to poly(A) participate in the poly(A)-protein complex in 15S duck globin mRNP particles.

S Goldenberg, A Vincent, K Scherrer
PMCID: PMC324279  PMID: 7443531

Abstract

The study of the interaction between mRNA and proteins in the polyribosomal 15 S duck globin messenger ribonucleoprotein complex showed that proteins protect specific mRNA sequences against digestion by the nonspecific micrococcal nuclease (Nucleic Acids Research 6 (8) 2787, 1979). Here we report the isolation of the poly(A)-protein RNP complex from nuclease digested 15 S mRNP by two different methods: sucrose gradient sedimentation and oligo(dT)-cellulose chromatography. We show by fingerprint analysis, that aprt from the periodically fragmented poly(A) segment, mRNA sequences adjacent and non-adjacent to the poly(A) segment are protected by the poly(A) binding proteins against nuclease digestion. The duck globin poly(A)-protein RNP complex, with a sedimentation coefficient between 7 S and 10 S, shows a characteristic protein composition, with a major 73,000 MW polypeptide and some minor components. The results are discussed in view of a dynamic ribonucleoprotein structure.

Full text

PDF
5061

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Adams D. S., Noonan D., Jeffery W. R. A model for the organization of the poly(A) . protein complex in messenger ribonucleoprotein. FEBS Lett. 1980 May 19;114(1):115–118. doi: 10.1016/0014-5793(80)80872-6. [DOI] [PubMed] [Google Scholar]
  2. Augenlicht L. H. Protected nucleotide sequences in nuclear ribonucleoprotein. Biochemistry. 1979 Aug 21;18(17):3780–3786. doi: 10.1021/bi00584a022. [DOI] [PubMed] [Google Scholar]
  3. Baer B. W., Kornberg R. D. Repeating structure of cytoplasmic poly(A)-ribonucleoprotein. Proc Natl Acad Sci U S A. 1980 Apr;77(4):1890–1892. doi: 10.1073/pnas.77.4.1890. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Blobel G. A protein of molecular weight 78,000 bound to the polyadenylate region of eukaryotic messenger RNAs. Proc Natl Acad Sci U S A. 1973 Mar;70(3):924–928. doi: 10.1073/pnas.70.3.924. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Cardelli J., Pitot H. C. Isolation and characterization of rat liver free and membrane-bound polysomal messenger ribonucleoprotein particles. Biochemistry. 1977 Nov 15;16(23):5127–5134. doi: 10.1021/bi00642a028. [DOI] [PubMed] [Google Scholar]
  6. Civelli O., Vincent A., Buri J. F., Scherrer K. Evidence for a translational inhibitor linked to globin mRNA in untranslated free cytoplasmic messenger ribonucleoprotein complexes. FEBS Lett. 1976 Dec 15;72(1):71–76. doi: 10.1016/0014-5793(76)80815-0. [DOI] [PubMed] [Google Scholar]
  7. Dubochet J., Morel C., Lebleu B., Herzberg M. Structure of globin mRNA and mRNA-protein particles. Use of dark-field electron microscopy. Eur J Biochem. 1973 Jul 16;36(2):465–472. doi: 10.1111/j.1432-1033.1973.tb02931.x. [DOI] [PubMed] [Google Scholar]
  8. Efstratiadis A., Vournakis J. N., Donis-Keller H., Chaconas G., Dougall D. K., Kafatos F. C. End labeling of enzymatically decapped mRNA. Nucleic Acids Res. 1977 Dec;4(12):4165–4174. doi: 10.1093/nar/4.12.4165. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Favre A., Morel C., Scherrer K. The secondary structure and poly(A) content of globin messenger RNA as a pure RNA and in polyribosome-derived ribonucleoprotein complexes. Eur J Biochem. 1975 Sep 1;57(1):147–157. doi: 10.1111/j.1432-1033.1975.tb02285.x. [DOI] [PubMed] [Google Scholar]
  10. Gander E. S., Mueller R. U., Goldenberg S., Morel C. EDTA-and puromycin-derived duck- and rabbit globin-messenger ribonucleoprotein complexes isolated by oligo (dT)-cellulose chromatography. Mol Biol Rep. 1975 Dec;2(4):343–349. doi: 10.1007/BF00357022. [DOI] [PubMed] [Google Scholar]
  11. Geller A. I., Rich A. A UGA termination suppression tRNATrp active in rabbit reticulocytes. Nature. 1980 Jan 3;283(5742):41–46. doi: 10.1038/283041a0. [DOI] [PubMed] [Google Scholar]
  12. Goldenberg S., Vincent A., Scherrer K. Evidence for the protection of specific RNA sequences in globin messenger ribonucleoprotein particles. Nucleic Acids Res. 1979 Jun 25;6(8):2787–2797. doi: 10.1093/nar/6.8.2787. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Heindell H. C., Liu A., Paddock G. V., Studnicka G. M., Salser W. A. The primary sequence of rabbit alpha-globin mRNA. Cell. 1978 Sep;15(1):43–54. doi: 10.1016/0092-8674(78)90081-8. [DOI] [PubMed] [Google Scholar]
  14. Jeffery W. R., Brawerman G. Characterization of the steady-state population of messenger RNA and its poly(adenylic acid) segment in mammalian cells. Biochemistry. 1974 Oct 22;13(22):4633–4637. doi: 10.1021/bi00719a026. [DOI] [PubMed] [Google Scholar]
  15. Korwek E. L., Nakazato N., Edmonds M., Venkatesan S. Poly(uridylic acid) sequences in messenger ribonucleic acid of HeLa cells. Biochemistry. 1976 Oct 19;15(21):4643–4649. doi: 10.1021/bi00666a015. [DOI] [PubMed] [Google Scholar]
  16. Kozak M. Influence of mRNA secondary structure on binding and migration of 40S ribosomal subunits. Cell. 1980 Jan;19(1):79–90. doi: 10.1016/0092-8674(80)90390-6. [DOI] [PubMed] [Google Scholar]
  17. Kwan S. W., Brawerman G. A particle associated with the polyadenylate segment in mammalian messenger RNA. Proc Natl Acad Sci U S A. 1972 Nov;69(11):3247–3250. doi: 10.1073/pnas.69.11.3247. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Liautard J. P., Jeanteur P. Purification of histone messenger ribonucleoprotein particles from HeLa cell S-phase polysomes. Characterization of associated proteins. Nucleic Acids Res. 1979 Sep 11;7(1):135–150. doi: 10.1093/nar/7.1.135. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Lindberg U., Sundquist B. Isolation of messenger ribonucleoproteins from mammalian cells. J Mol Biol. 1974 Jun 25;86(2):451–468. doi: 10.1016/0022-2836(74)90030-8. [DOI] [PubMed] [Google Scholar]
  20. Maundrell K., Maxwell E. S., Civelli O., Vincent A., Goldenberg S., Buri J. F., Imaizumi-Scherrer M. T., Scherrer K. Messenger ribonucleoprotein complexes in avian erythroblasts: carriers of post-transcriptional regulation? Mol Biol Rep. 1979 May 31;5(1-2):43–51. doi: 10.1007/BF00777487. [DOI] [PubMed] [Google Scholar]
  21. Maundrell K., Scherrer K. Characterization of pre-messenger-RNA-containing nuclear ribonucleoprotein particles from avian erythroblasts. Eur J Biochem. 1979 Sep;99(2):225–238. doi: 10.1111/j.1432-1033.1979.tb13249.x. [DOI] [PubMed] [Google Scholar]
  22. Morel C., Gander E. S., Herzberg M., Dubochet J., Scherrer K. The duck-globin messenger-ribonucleoprotein complex. Resistance to high ionic strength, particle gel electrophoresis, composition and visualisation by dark-field electron microscopy. Eur J Biochem. 1973 Jul 16;36(2):455–464. doi: 10.1111/j.1432-1033.1973.tb02930.x. [DOI] [PubMed] [Google Scholar]
  23. Morel Carlos, Kayibanda Boniface, Scherrer Klaus. Proteins associated with globin messenger RNA in avian erythroblasts: Isolation and comparison with the proteins bound to nuclear messenger-likie RNA. FEBS Lett. 1971 Oct 15;18(1):84–88. doi: 10.1016/0014-5793(71)80413-1. [DOI] [PubMed] [Google Scholar]
  24. Nakazato H., Edmonds M. The isolation and purification of rapidly labeled polysome-bound ribonucleic acid on polythymidylate cellulose. J Biol Chem. 1972 May 25;247(10):3365–3367. [PubMed] [Google Scholar]
  25. Pavlakis G. N., Lockard R. E., Vamvakopoulos N., Rieser L., RajBhandary U. L., Vournakis J. N. Secondary structure of mouse and rabbit alpha- and beta-globin mRNAs: differential accessibility of alpha and beta initiator AUG codons towards nucleases. Cell. 1980 Jan;19(1):91–102. doi: 10.1016/0092-8674(80)90391-8. [DOI] [PubMed] [Google Scholar]
  26. Pelham H. R. Leaky UAG termination codon in tobacco mosaic virus RNA. Nature. 1978 Mar 30;272(5652):469–471. doi: 10.1038/272469a0. [DOI] [PubMed] [Google Scholar]
  27. Samarina O. P., Krichevskaya A. A., Georgiev G. P. Nuclear ribonucleoprotein particles containing messenger ribonucleic acid. Nature. 1966 Jun 25;210(5043):1319–1322. doi: 10.1038/2101319a0. [DOI] [PubMed] [Google Scholar]
  28. Sonenberg N., Morgan M. A., Testa D., Colonno R. J., Shatkin A. J. Interaction of a limited set of proteins with different mRNAs and protection of 5'-caps against pyrophosphatase digestion in initiation complexes. Nucleic Acids Res. 1979 Sep 11;7(1):15–29. doi: 10.1093/nar/7.1.15. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Stewart A. G., Gander E. S., Morel C., Luppis B., Scherrer K. Differential translation of duck- and rabbit-globin messenger RNAs in reticulocyte-lysate systems. Eur J Biochem. 1973 Apr;34(2):205–212. doi: 10.1111/j.1432-1033.1973.tb21105.x. [DOI] [PubMed] [Google Scholar]
  30. Sundquist B., Persson T., Lindberg U. Characterization of mRNA-protein complexes from mammalian cells. Nucleic Acids Res. 1977 Apr;4(4):899–915. doi: 10.1093/nar/4.4.899. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Vincent A., Civelli O., Buri J. F., Scherrer K. Correlation of specific coding sequences with specific proteins associated in untranslated cytoplasmic messenger ribonucleoprotein complexes of duck erythroblasts. FEBS Lett. 1977 May 15;77(2):281–286. [PubMed] [Google Scholar]
  32. Williamson R. The protein moieties of animal messenger ribonucleoproteins. FEBS Lett. 1973 Nov 15;37(1):1–6. doi: 10.1016/0014-5793(73)80413-2. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES