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. 1980 Dec 11;8(23):5567–5577. doi: 10.1093/nar/8.23.5567

Characterization of the Escherichia coli 23S Ribosomal RNA region associated with ribosomal protein L1. Evidence for homologies with the 5'-end region of the L11 operon.

C Branlant, A Krol, J P Ebel
PMCID: PMC324326  PMID: 6162152

Abstract

The results previously obtained upon studying the L1-23S RNA complex by the fingerprint technique have been reexamined in the light of new data on 23S RNA primary structure. The 23S RNA region that remains associated with the L1 ribosomal protein after RNase digestion of the synthetic complex lies between nucleotides 2067 and 2235 from the 5'-end of the molecule. This region contains a m7G near to the 5'-end and possesses a high degree of mutability in E. coli. Three different sequences were observed in E. coli MRE 600. All three sequences differ in two positions relative to the corresponding sequence in rrnB cistron from E. coli K12. Striking homology is observed between the 23S RNA region associated with protein L1 and the 5'-part of L11 operon. This observation supports the model of feedback regulation of r-proteins synthesis proposed by Yates et al. (PNAS, 77, 1837) and strongly suggests that the region of 23S RNA located between positions 2155 and 2202 is essential for the binding of protein L1.

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Selected References

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  1. Bram R. J., Young R. A., Steitz J. A. The ribonuclease III site flanking 23S sequences in the 30S ribosomal precursor RNA of E. coli. Cell. 1980 Feb;19(2):393–401. doi: 10.1016/0092-8674(80)90513-9. [DOI] [PubMed] [Google Scholar]
  2. Branlant C., Korobko V., Ebel J. P. The binding site of protein L1 on 23-S ribosomal RNA from Escherichia coli. 3. Nucleotide sequence. Eur J Biochem. 1976 Nov 15;70(2):471–482. doi: 10.1111/j.1432-1033.1976.tb11038.x. [DOI] [PubMed] [Google Scholar]
  3. Branlant C., Krol A., Machatt M. A., Ebel J. P. Structural study of ribosomal 23 S RNA from Escherichia coli. FEBS Lett. 1979 Nov 1;107(1):177–181. doi: 10.1016/0014-5793(79)80490-1. [DOI] [PubMed] [Google Scholar]
  4. Branlant C., Krol A., Sriwdada J., Ebel J. P., Sloof P., Garrett R. A. The binding site of protein L1 ON 23-S ribosomal RNA of Escherichia coli. 2. Identification of the rna region contained in the L1 ribonucleoproteins and determination of the order of the RNA subfragments within this region. Eur J Biochem. 1976 Nov 15;70(2):457–469. doi: 10.1111/j.1432-1033.1976.tb11037.x. [DOI] [PubMed] [Google Scholar]
  5. Branlant C., Krol A., Sriwidada J., Brimacombe R. RNA sequences associated with proteins L1, L9, and L5, L18, L25, in ribonucleoprotein fragments isolated from the 50-S subunit of Escherichia coli ribosomes. Eur J Biochem. 1976 Nov 15;70(2):483–492. doi: 10.1111/j.1432-1033.1976.tb11039.x. [DOI] [PubMed] [Google Scholar]
  6. Branlant C., Widada J. S., Krol A., Ebel J. P. Studies on the primary structure of the ribosomal 23S RNA of Escherichia coli: II. A characterisation and an alignment of 24 sections spanning the entire molecule and its application to the localisation of specific fragments. Nucleic Acids Res. 1977 Dec;4(12):4323–4345. doi: 10.1093/nar/4.12.4323. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Brosius J., Dull T. J., Noller H. F. Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A. 1980 Jan;77(1):201–204. doi: 10.1073/pnas.77.1.201. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Fellner P. Nucleotide sequences from specific areas of the 16S and 23S ribosomal RNAs of E. coli. Eur J Biochem. 1969 Nov;11(1):12–27. doi: 10.1111/j.1432-1033.1969.tb00733.x. [DOI] [PubMed] [Google Scholar]
  9. Garret R. A., Müller S., Spierer P., Zimmermann R. A. Letter: Binding of 50 S ribosomal subunit proteins to 23 S RNA of Escherichia coli. J Mol Biol. 1974 Sep 15;88(2):553–557. doi: 10.1016/0022-2836(74)90503-8. [DOI] [PubMed] [Google Scholar]
  10. Hernández F., Vázquez D., Ballesta J. P. Functional roles of 50-S ribosomal proteins. Eur J Biochem. 1977 Aug 15;78(1):267–272. doi: 10.1111/j.1432-1033.1977.tb11737.x. [DOI] [PubMed] [Google Scholar]
  11. Kazemie M. Binding of aminoacyl-tRNA to reconstituted subparticles of Escherichia coli large ribosomal subunits. Eur J Biochem. 1976 Aug 16;67(2):373–378. doi: 10.1111/j.1432-1033.1976.tb10701.x. [DOI] [PubMed] [Google Scholar]
  12. Konrad B., Kirschbaum J., Austin S. Isolation and characterization of phi80 transducing bacteriophage for a ribonucleic acid polymerase gene. J Bacteriol. 1973 Nov;116(2):511–516. doi: 10.1128/jb.116.2.511-516.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Krol A., Branlant C., Ebel J. P., Visentin L. P. Recognition of RNA by ribosomal protein S1: interaction of S1 with 23 S rRNA of Escherichia coli. FEBS Lett. 1977 Aug 15;80(2):255–260. doi: 10.1016/0014-5793(77)80452-3. [DOI] [PubMed] [Google Scholar]
  14. Mizushima S., Nomura M. Assembly mapping of 30S ribosomal proteins from E. coli. Nature. 1970 Jun 27;226(5252):1214–1214. doi: 10.1038/2261214a0. [DOI] [PubMed] [Google Scholar]
  15. Post L. E., Strycharz G. D., Nomura M., Lewis H., Dennis P. P. Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit beta in Escherichia coli. Proc Natl Acad Sci U S A. 1979 Apr;76(4):1697–1701. doi: 10.1073/pnas.76.4.1697. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Sri Widada J., Branlant C., Ebel J. P. Studies on the primary structure of Escherichia coli 23S rRNA. III. Nucleotide sequence of the T1 RNase digestion products containing one or no uridine residue. Biochimie. 1979;61(7):869–876. doi: 10.1016/s0300-9084(79)80283-7. [DOI] [PubMed] [Google Scholar]
  17. Stanley J., Sloof P., Ebel J. P. The binding site of ribosomal protein L1 from Escherichia coli on the 23-S ribosomal RNA from Bacillus stearothermophilus. A possible base-pairing scheme differing from that proposed for Escherichia coli. Eur J Biochem. 1978 Apr;85(1):309–316. doi: 10.1111/j.1432-1033.1978.tb12240.x. [DOI] [PubMed] [Google Scholar]
  18. Yates J. L., Arfsten A. E., Nomura M. In vitro expression of Escherichia coli ribosomal protein genes: autogenous inhibition of translation. Proc Natl Acad Sci U S A. 1980 Apr;77(4):1837–1841. doi: 10.1073/pnas.77.4.1837. [DOI] [PMC free article] [PubMed] [Google Scholar]

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