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. 1983 May 25;11(10):3019–3025. doi: 10.1093/nar/11.10.3019

Complete nucleotide sequence of alfalfa mosaic virus RNA 2.

B J Cornelissen, F T Brederode, G H Veeneman, J H van Boom, J F Bol
PMCID: PMC325944  PMID: 6304618

Abstract

Double-stranded cDNA of in vitro polyadenylated alfalfa mosaic virus (AlMV) RNA 2 has been cloned and sequenced. The use of an oligodeoxyribonucleotide corresponding to the known sequence of the 5'-end of RNA 2 to prime second-strand DNA synthesis, enabled us to construct the complete primary structure of AlMV RNA 2. The sequence of 2,593 nucleotides contains a long open reading frame for a protein of Mr 89,753 starting at the first AUG codon from the 5'-end. This coding region is flanked by a 5'-terminal sequence of 54 nucleotides and a 3'-noncoding region of 166 nucleotides which includes the sequence of 145 nucleotides the three genomic RNAs of AlMV have in common.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Ahlquist P., Luckow V., Kaesberg P. Complete nucleotide sequence of brome mosaic virus RNA3. J Mol Biol. 1981 Nov 25;153(1):23–38. doi: 10.1016/0022-2836(81)90524-6. [DOI] [PubMed] [Google Scholar]
  2. Bol J. F., Brederode F. T., Janze G. C., Rauh D. K. Studies on sequence homology between the RNA's of alfalfa mosaic virus. Virology. 1975 May;65(1):1–15. doi: 10.1016/0042-6822(75)90002-1. [DOI] [PubMed] [Google Scholar]
  3. Brederode F. T., Koper-Zwarthoff E. C., Bol J. F. Complete nucleotide sequence of alfalfa mosaic virus RNA 4. Nucleic Acids Res. 1980 May 24;8(10):2213–2223. doi: 10.1093/nar/8.10.2213. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Cornelissen B. J., Brederode F. T., Moormann R. J., Bol J. F. Complete nucleotide sequence of alfalfa mosaic virus RNA 1. Nucleic Acids Res. 1983 Mar 11;11(5):1253–1265. doi: 10.1093/nar/11.5.1253. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Devos R., van Emmelo J., Seurinck-Opsomer C., Gillis E., Fiers W. Addition by ATP: RNA adenylyltransferase from Escherichia coli of 3'-linked oligo(A) to bacteriophage Qbeta RNA and its effect on RNA replication. Biochim Biophys Acta. 1976 Oct 18;447(3):319–327. doi: 10.1016/0005-2787(76)90055-1. [DOI] [PubMed] [Google Scholar]
  6. Goelet P., Lomonossoff G. P., Butler P. J., Akam M. E., Gait M. J., Karn J. Nucleotide sequence of tobacco mosaic virus RNA. Proc Natl Acad Sci U S A. 1982 Oct;79(19):5818–5822. doi: 10.1073/pnas.79.19.5818. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Gould A. R., Symons R. H. Alfalfa mosaic virus RNA. Determination of the sequence homology between the four RNA species and a comparison with the four RNA species of cucumber mosaic virus. Eur J Biochem. 1978 Nov 2;91(1):269–278. doi: 10.1111/j.1432-1033.1978.tb20962.x. [DOI] [PubMed] [Google Scholar]
  8. Gould A. R., Symons R. H. Cucumber mosaic virus RNA 3. Determination of the nucleotide sequence provides the amino acid sequences of protein 3A and viral coat protein. Eur J Biochem. 1982 Aug;126(2):217–226. [PubMed] [Google Scholar]
  9. Koper-Zwarthoff E. C., Brederode F. T., Veeneman G., van Boom J. H., Bol J. F. Nucleotide sequences at the 5'-termini of the alfalfa mosaic virus RNAs and the intercistronic junction in RNA 3. Nucleic Acids Res. 1980 Dec 11;8(23):5635–5647. doi: 10.1093/nar/8.23.5635. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Koper-Zwarthoff E. C., Brederode F. T., Walstra P., Bol J. F. Nucleotide sequence of the 3'-noncoding region of alfalfa mosaic virus RNA 4 and its homology with the genomic RNAs. Nucleic Acids Res. 1979 Dec 11;7(7):1887–1900. doi: 10.1093/nar/7.7.1887. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
  12. Mohier E., Hirth L., Le Meur M. A., Gerlinger P. Translation of alfalfa mosaic virus RNA's in mammalian cell-free systems. Virology. 1975 Dec;68(2):349–359. doi: 10.1016/0042-6822(75)90278-0. [DOI] [PubMed] [Google Scholar]
  13. Sippel A. E. Purification and characterization of adenosine triphosphate: ribonucleic acid adenyltransferase from Escherichia coli. Eur J Biochem. 1973 Aug 1;37(1):31–40. doi: 10.1111/j.1432-1033.1973.tb02953.x. [DOI] [PubMed] [Google Scholar]
  14. van Tol R. G., van Vloten-Doting L. Translation of alfalfa-mosaic-virus RNA 1 in the mRNA-dependent translation system from rabbit reticulocyte lysates. Eur J Biochem. 1979 Feb 1;93(3):461–468. doi: 10.1111/j.1432-1033.1979.tb12844.x. [DOI] [PubMed] [Google Scholar]

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