Abstract
The complete nucleotide sequence of the rat 18S ribosomal RNA gene has been determined. A comparison of the rat 18S ribosomal RNA gene sequence with the known sequences of yeast and frog revealed three conserved (stable) regions, two unstable regions, and three large inserts. (A,T) leads to (G,C) changes were more frequent than (G,C) leads to (A,T) changes for three comparisons (yeast leads to frog, frog leads to rat, and yeast leads to rat). GC pairs were inserted preferentially over AT pairs for the same three comparisons. These two factors contribute to the progressively higher GC content of 18S ribosomal RNA of yeast, frog, and rat.
Full text
PDFImages in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Azad A. A., Deacon N. J. The 3'-terminal primary structure of five eukaryotic 18S rRNAs determined by the direct chemical method of sequencing. The highly conserved sequences include an invariant region complementary to eukaryotic 5S rRNA. Nucleic Acids Res. 1980 Oct 10;8(19):4365–4376. doi: 10.1093/nar/8.19.4365. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Free S. J., Rice P. W., Metzenberg R. L. Arrangement of the genes coding for ribosomal ribonucleic acids in Neurospora crassa. J Bacteriol. 1979 Mar;137(3):1219–1226. doi: 10.1128/jb.137.3.1219-1226.1979. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fuke M., Busch H. A T1 ribonuclease fragment present in 18 S ribosomal RNA of Novikoff rat ascites hepatoma cells and absent from 18 S ribosomal RNA of HeLa cells. J Mol Biol. 1975 Dec 5;99(2):277–281. doi: 10.1016/s0022-2836(75)80145-8. [DOI] [PubMed] [Google Scholar]
- Fuke M., Busch H. Comparison of nucleotide sequences of large T1 ribonuclease fragments of 18S ribosomal RNA of rat and chicken. Nucleic Acids Res. 1979 Nov 10;7(5):1131–1135. doi: 10.1093/nar/7.5.1131. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fuke M., Busch H. HindIII-sensitive sites present once in every four repeats of EcoRI-sensitive sites in Novikoff rat hepatoma DNA. FEBS Lett. 1979 Mar 1;99(1):136–140. doi: 10.1016/0014-5793(79)80265-3. [DOI] [PubMed] [Google Scholar]
- Fuke M., Busch H., Rao P. N. Evolutionary trends in 18S ribosomal RNA nucleotide sequences of rat, mouse, hamster and man. Nucleic Acids Res. 1976 Nov;3(11):2939–2957. doi: 10.1093/nar/3.11.2939. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fuke M., Dennis K. J., Busch H. Characterization of cloned rat ribosomal DNA fragments. Mol Gen Genet. 1981;182(1):25–30. doi: 10.1007/BF00422762. [DOI] [PubMed] [Google Scholar]
- Fuke M. Introduction of specific cleavages into RNAs of RNA bacteriophages for determination of base sequences. Proc Natl Acad Sci U S A. 1974 Mar;71(3):742–745. doi: 10.1073/pnas.71.3.742. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Georgiev O. I., Nikolaev N., Hadjiolov A. A., Skryabin K. G., Zakharyev V. M., Bayev A. A. The structure of the yeast ribosomal RNA genes. 4. Complete sequence of the 25 S rRNA gene from Saccharomyces cerevisae. Nucleic Acids Res. 1981 Dec 21;9(24):6953–6958. doi: 10.1093/nar/9.24.6953. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gerbi S. A. Fine structure of ribosomal RNA. I. Conservation of homologous regions within ribosomal RNA of eukaryotes. J Mol Biol. 1976 Sep 25;106(3):791–816. doi: 10.1016/0022-2836(76)90265-5. [DOI] [PubMed] [Google Scholar]
- Hagenbüchle O., Santer M., Steitz J. A., Mans R. J. Conservation of the primary structure at the 3' end of 18S rRNA from eucaryotic cells. Cell. 1978 Mar;13(3):551–563. doi: 10.1016/0092-8674(78)90328-8. [DOI] [PubMed] [Google Scholar]
- Hall L. M., Maden B. E. Nucleotide sequence through the 18S-28S intergene region of a vertebrate ribosomal transcription unit. Nucleic Acids Res. 1980 Dec 20;8(24):5993–6005. doi: 10.1093/nar/8.24.5993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lockard R. E., Connaughton J. F., Kumar A. Nucleotide sequence of the 5'- and 3'- domains for rabbit 18S ribosomal RNA. Nucleic Acids Res. 1982 Jun 11;10(11):3445–3457. doi: 10.1093/nar/10.11.3445. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Maden B. E., Forbes J., de Jonge P., Klootwijk J. Presence of a hypermodified nucleotide in HeLa cell 18 S and Saccharomyces carlsbergensis 17 S ribosomal RNAs. FEBS Lett. 1975 Nov 1;59(1):60–63. doi: 10.1016/0014-5793(75)80341-3. [DOI] [PubMed] [Google Scholar]
- Maden B. E., Moss M., Salim M. Nucleotide sequence of an external transcribed spacer in Xenopus laevis rDNA: sequences flanking the 5' and 3' ends of 18S rRNA are non-complementary. Nucleic Acids Res. 1982 Apr 10;10(7):2387–2398. doi: 10.1093/nar/10.7.2387. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mao J., Appel B., Schaack J., Sharp S., Yamada H., Söll D. The 5S RNA genes of Schizosaccharomyces pombe. Nucleic Acids Res. 1982 Jan 22;10(2):487–500. doi: 10.1093/nar/10.2.487. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Maxam A. M., Gilbert W. A new method for sequencing DNA. Proc Natl Acad Sci U S A. 1977 Feb;74(2):560–564. doi: 10.1073/pnas.74.2.560. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nath K., Bollon A. P. Organization of the yeast ribosomal RNA gene cluster via cloning and restriction analysis. J Biol Chem. 1977 Sep 25;252(18):6562–6571. [PubMed] [Google Scholar]
- Rubtsov P. M., Musakhanov M. M., Zakharyev V. M., Krayev A. S., Skryabin K. G., Bayev A. A. The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae. Nucleic Acids Res. 1980 Dec 11;8(23):5779–5794. doi: 10.1093/nar/8.23.5779. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Salim M., Maden B. E. Nucleotide sequence of Xenopus laevis 18S ribosomal RNA inferred from gene sequence. Nature. 1981 May 21;291(5812):205–208. doi: 10.1038/291205a0. [DOI] [PubMed] [Google Scholar]
- Saponara A. G., Enger M. D. The isolation from ribonucleic acid of substituted uridines containing alpha-aminobutyrate moieties derived from methionine. Biochim Biophys Acta. 1974 Apr 27;349(1):61–77. doi: 10.1016/0005-2787(74)90009-4. [DOI] [PubMed] [Google Scholar]
- Skriabin K. G., Kraev A. S., Rubtsov P. M., Baev A. A. Polnaia posledovatel'nost' nukleotidov speisernoi oblasti, raspolozhennoi mezhdu genami 18S i 5.8S RNK drozhzhei. Dokl Akad Nauk SSSR. 1979;247(3):761–765. [PubMed] [Google Scholar]
- Skriabin K. G., Zakhar'ev V. M., Rubtsov P. M., Baev A. A. Posledovatel'nost' nukleotidov predpolagaemoi oblasti initsiatsii transkriptsii ribosomnogo operona drozhzhei. Dokl Akad Nauk SSSR. 1979;247(5):1275–1277. [PubMed] [Google Scholar]
- Torczynski R., Bollon A. P., Fuke M. Nucleotide sequence of the 3'-terminal region of rat 18S ribosomal DNA. Mol Gen Genet. 1981;184(3):557–559. doi: 10.1007/BF00352540. [DOI] [PubMed] [Google Scholar]
- Veldman G. M., Klootwijk J., de Regt V. C., Planta R. J., Branlant C., Krol A., Ebel J. P. The primary and secondary structure of yeast 26S rRNA. Nucleic Acids Res. 1981 Dec 21;9(24):6935–6952. doi: 10.1093/nar/9.24.6935. [DOI] [PMC free article] [PubMed] [Google Scholar]