Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1981 Apr 24;9(8):1949–1961. doi: 10.1093/nar/9.8.1949

Properties of a DNA-dependent ATPase from rat mitochondria.

K Yaginuma, K Koike
PMCID: PMC326815  PMID: 6264401

Abstract

A DNA-dependent ATPase has been highly purified from rat liver mitochondria and characterized. The enzyme catalyzes the hydrolysis of ATP or dATP in the presence of single-stranded DNA cofactor and a divalent cation. The Km values for ATP and dATP are 0.15 mM and 0.35 mM, respectively. The enzyme activity is highly sensitive to N-ethylmaleimide. The sedimentation coefficient of the enzyme is 8.3 S in a glycerol gradient. From this and data on Sephadex G-200 gel filtration, the molecular weight of the native enzyme was calculated to be about 190,000. All the natural single-stranded DNAs tested were equally effective for the ATPase activity, but synthetic deoxyhomopolymer poly(dC) was found to be more effective than natural single-stranded DNAs. Synthetic and natural RNAs had no effect on the activity.

Full text

PDF
1954

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Abdel-Monem M., Chanal M. C., Hoffmann-Berling H. DNA unwinding enzyme II of Escherichia coli. 1. Purification and characterization of the ATPase activity. Eur J Biochem. 1977 Sep 15;79(1):33–38. doi: 10.1111/j.1432-1033.1977.tb11780.x. [DOI] [PubMed] [Google Scholar]
  2. Abdel-Monem M., Hoffmann-Berling H. Enzymic unwinding of DNA. 1. Purification and characterization of a DNA-dependent ATPase from Escherichia coli. Eur J Biochem. 1976 Jun 1;65(2):431–440. doi: 10.1111/j.1432-1033.1976.tb10358.x. [DOI] [PubMed] [Google Scholar]
  3. Assairi L. M., Johnston I. R. A DNA-dependent ATPase of calf-thymus. Eur J Biochem. 1979 Aug 15;99(1):71–79. doi: 10.1111/j.1432-1033.1979.tb13232.x. [DOI] [PubMed] [Google Scholar]
  4. Bolden A., Noy G. P., Weissbach A. DNA polymerase of mitochondria is a gamma-polymerase. J Biol Chem. 1977 May 25;252(10):3351–3356. [PubMed] [Google Scholar]
  5. Cobianchi F., Riva S., Mastromei G., Spadari S., Pedrali-Noy G., Falaschi A. Enhancement of the rate of DNA polymerase-alpha activity on duplex DNA by a DNA-binding protein and a DNA-dependent ATPase of mammalian cells. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 1):639–647. doi: 10.1101/sqb.1979.043.01.071. [DOI] [PubMed] [Google Scholar]
  6. Fairfield F. R., Bauer W. R., Simpson M. V. Mitochondria contain a distinct DNA topoisomerase. J Biol Chem. 1979 Oct 10;254(19):9352–9354. [PubMed] [Google Scholar]
  7. Fujisawa T., Tanaka S., Kobayashi M., Koike K. Mitochondrial DNA polymerase from rat liver. Biochim Biophys Acta. 1977 Apr 19;475(4):611–622. doi: 10.1016/0005-2787(77)90322-7. [DOI] [PubMed] [Google Scholar]
  8. Gellert M., Mizuuchi K., O'Dea M. H., Nash H. A. DNA gyrase: an enzyme that introduces superhelical turns into DNA. Proc Natl Acad Sci U S A. 1976 Nov;73(11):3872–3876. doi: 10.1073/pnas.73.11.3872. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Giacherio D., Hager L. P. A poly(dT)-stimulated ATPase activity associated with simian virus 40 large T antigen. J Biol Chem. 1979 Sep 10;254(17):8113–8116. [PubMed] [Google Scholar]
  10. Glynn I. M., Chappell J. B. A simple method for the preparation of 32-P-labelled adenosine triphosphate of high specific activity. Biochem J. 1964 Jan;90(1):147–149. doi: 10.1042/bj0900147. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Hachmann H. J., Lezius A. G. An ATPase depending on the presence of single-stranded DNA from mouse myeloma. Eur J Biochem. 1976 Jan 15;61(2):325–330. doi: 10.1111/j.1432-1033.1976.tb10025.x. [DOI] [PubMed] [Google Scholar]
  12. Koike K., Kobayashi M., Sekiya T. Cloning and characterization of the replication origin from rat mitochondrial DNA. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 1):193–201. doi: 10.1101/sqb.1979.043.01.025. [DOI] [PubMed] [Google Scholar]
  13. Koike K., Kobayashi M. Synthesis of mitochondrial DNA in vitro: two classes of nascent DNAs. Biochim Biophys Acta. 1973 Nov 14;324(4):452–460. doi: 10.1016/0005-2787(73)90204-9. [DOI] [PubMed] [Google Scholar]
  14. Kolodner R., Richardson C. C. Replication of duplex DNA by bacteriophage T7 DNA polymerase and gene 4 protein is accompanied by hydrolysis of nucleoside 5'-triphosphates. Proc Natl Acad Sci U S A. 1977 Apr;74(4):1525–1529. doi: 10.1073/pnas.74.4.1525. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Kornberg A. Aspects of DNA replication. Cold Spring Harb Symp Quant Biol. 1979;43(Pt 1):1–9. doi: 10.1101/sqb.1979.043.01.003. [DOI] [PubMed] [Google Scholar]
  16. McMacken R., Ueda K., Kornberg A. Migration of Escherichia coli dnaB protein on the template DNA strand as a mechanism in initiating DNA replication. Proc Natl Acad Sci U S A. 1977 Oct;74(10):4190–4194. doi: 10.1073/pnas.74.10.4190. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Sharp P. A., Sugden B., Sambrook J. Detection of two restriction endonuclease activities in Haemophilus parainfluenzae using analytical agarose--ethidium bromide electrophoresis. Biochemistry. 1973 Jul 31;12(16):3055–3063. doi: 10.1021/bi00740a018. [DOI] [PubMed] [Google Scholar]
  18. Siegel L. M., Monty K. J. Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases. Biochim Biophys Acta. 1966 Feb 7;112(2):346–362. doi: 10.1016/0926-6585(66)90333-5. [DOI] [PubMed] [Google Scholar]
  19. Tanaka S., Koike K. DNA polymerase-gamma is localized in mitochondria. Biochem Biophys Res Commun. 1978 Apr 14;81(3):791–797. doi: 10.1016/0006-291x(78)91421-3. [DOI] [PubMed] [Google Scholar]
  20. Tanaka S., Koike K. Template specificity of rat mitochondrial DNA polymerase. Biochim Biophys Acta. 1977 Dec 2;479(3):290–299. doi: 10.1016/0005-2787(77)90111-3. [DOI] [PubMed] [Google Scholar]
  21. Yarranton G. T., Das R. H., Gefter M. L. Enzyme-catalyzed DNA unwinding. A DNA-dependent ATPase from E. coli. J Biol Chem. 1979 Dec 10;254(23):11997–12001. [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES