Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1992 Oct 11;20(19):4981–4985. doi: 10.1093/nar/20.19.4981

Alw26I, Eco31I and Esp3I--type IIs methyltransferases modifying cytosine and adenine in complementary strands of the target DNA.

J Bitinaite 1, Z Maneliene 1, S Menkevicius 1, S Klimasauskas 1, V Butkus 1, A Janulaitis 1
PMCID: PMC334273  PMID: 1408816

Abstract

The specificity of three DNA methyltransferases M.Alw26I, M.Eco31I and M.Esp3I, isolated from Acinetobacter Iwoffi RFL26, Escherichia coli RFL31 and Hafnia alvei RFL3+, respectively, was determined. All the enzymes methylate both strands of asymmetric recognition sites yielding m5C in the top-strand and m6A in the bottom-strand, as below: 5'-GTm5CTC 5'-GGTm5CTC 5'-CGTm5CTC 3'-Cm6AGAG 3'-CCm6AGAG 3'-GCm6AGAG (M.Alw26I) (M.Eco31I) (M.Esp3I) They are the first members of type IIs methyltransferases that modify different types of nucleotides in the recognition sequence.

Full text

PDF
4983

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bitinaite J., Grigaite R., Maneliene Z., Butkus V., Janulaitis A. Esp3I--a novel type IIs restriction endonuclease from Hafnia alvei that recognizes the sequence 5'-CGTCTC(N)1/5-3'. Nucleic Acids Res. 1991 Sep 25;19(18):5076–5076. doi: 10.1093/nar/19.18.5076. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bocklage H., Heeger K., Müller-Hill B. Cloning and characterization of the MboII restriction-modification system. Nucleic Acids Res. 1991 Mar 11;19(5):1007–1013. doi: 10.1093/nar/19.5.1007. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Bolton B. J., Schmitz G. G., Jarsch M., Comer M. J., Kessler C. Ksp632I, a novel class-IIS restriction endonuclease from Kluyvera sp. strain 632 with the asymmetric hexanucleotide recognition sequence: 5'-CTCTTC(N)1-3' 3'-GAGAAG(N)4-5'. Gene. 1988 Jun 15;66(1):31–43. doi: 10.1016/0378-1119(88)90222-3. [DOI] [PubMed] [Google Scholar]
  4. Butkus V., Bitinaité J., Kersulyté D., Janulaitis A. A new restriction endonuclease Eco31I recognizing a non-palindromic sequence. Biochim Biophys Acta. 1985 Dec 18;826(4):208–212. doi: 10.1016/0167-4781(85)90008-9. [DOI] [PubMed] [Google Scholar]
  5. Butkus V., Petrauskiene L., Maneliene Z., Klimasauskas S., Laucys V., Janulaitis A. Cleavage of methylated CCCGGG sequences containing either N4-methylcytosine or 5-methylcytosine with MspI, HpaII, SmaI, XmaI and Cfr9I restriction endonucleases. Nucleic Acids Res. 1987 Sep 11;15(17):7091–7102. doi: 10.1093/nar/15.17.7091. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Bächi B., Reiser J., Pirrotta V. Methylation and cleavage sequences of the EcoP1 restriction-modification enzyme. J Mol Biol. 1979 Feb 25;128(2):143–163. doi: 10.1016/0022-2836(79)90123-2. [DOI] [PubMed] [Google Scholar]
  7. Hümbelin M., Suri B., Rao D. N., Hornby D. P., Eberle H., Pripfl T., Kenel S., Bickle T. A. Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants. J Mol Biol. 1988 Mar 5;200(1):23–29. doi: 10.1016/0022-2836(88)90330-0. [DOI] [PubMed] [Google Scholar]
  8. Jay E., Bambara R., Padmanabhan R., Wu R. DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping. Nucleic Acids Res. 1974 Mar;1(3):331–353. doi: 10.1093/nar/1.3.331. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Klimasauskas S., Steponaviciene D., Maneliene Z., Petrusyte M., Butkus V., Janulaitis A. M.Smal is an N4-methylcytosine specific DNA-methylase. Nucleic Acids Res. 1990 Nov 25;18(22):6607–6609. doi: 10.1093/nar/18.22.6607. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Klimasauskas S., Timinskas A., Menkevicius S., Butkienè D., Butkus V., Janulaitis A. Sequence motifs characteristic of DNA[cytosine-N4]methyltransferases: similarity to adenine and cytosine-C5 DNA-methylases. Nucleic Acids Res. 1989 Dec 11;17(23):9823–9832. doi: 10.1093/nar/17.23.9823. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Landry D., Looney M. C., Feehery G. R., Slatko B. E., Jack W. E., Schildkraut I., Wilson G. G. M.FokI methylates adenine in both strands of its asymmetric recognition sequence. Gene. 1989 Apr 15;77(1):1–10. doi: 10.1016/0378-1119(89)90353-3. [DOI] [PubMed] [Google Scholar]
  12. Lauster R., Trautner T. A., Noyer-Weidner M. Cytosine-specific type II DNA methyltransferases. A conserved enzyme core with variable target-recognizing domains. J Mol Biol. 1989 Mar 20;206(2):305–312. doi: 10.1016/0022-2836(89)90480-4. [DOI] [PubMed] [Google Scholar]
  13. Looney M. C., Moran L. S., Jack W. E., Feehery G. R., Benner J. S., Slatko B. E., Wilson G. G. Nucleotide sequence of the FokI restriction-modification system: separate strand-specificity domains in the methyltransferase. Gene. 1989 Aug 15;80(2):193–208. doi: 10.1016/0378-1119(89)90284-9. [DOI] [PubMed] [Google Scholar]
  14. McClelland M., Nelson M., Cantor C. R. Purification of Mbo II methylase (GAAGmA) from Moraxella bovis: site specific cleavage of DNA at nine and ten base pair sequences. Nucleic Acids Res. 1985 Oct 25;13(20):7171–7182. doi: 10.1093/nar/13.20.7171. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. McClelland M. The effect of sequence specific DNA methylation on restriction endonuclease cleavage. Nucleic Acids Res. 1981 Nov 25;9(22):5859–5866. doi: 10.1093/nar/9.22.5859. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Nelson M., Christ C., Schildkraut I. Alteration of apparent restriction endonuclease recognition specificities by DNA methylases. Nucleic Acids Res. 1984 Jul 11;12(13):5165–5173. doi: 10.1093/nar/12.13.5165. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Piekarowicz A., Yuan R., Stein D. C. Purification and characterization of DNA methyltransferases from Neisseria gonorrhoeae. Nucleic Acids Res. 1988 Jul 11;16(13):5957–5972. doi: 10.1093/nar/16.13.5957. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Pósfai G., Szybalski W. A simple method for locating methylated bases in DNA, as applied to detect asymmetric methylation by M.FokIA. Gene. 1988 Sep 15;69(1):147–151. doi: 10.1016/0378-1119(88)90388-5. [DOI] [PubMed] [Google Scholar]
  19. Pósfai J., Bhagwat A. S., Pósfai G., Roberts R. J. Predictive motifs derived from cytosine methyltransferases. Nucleic Acids Res. 1989 Apr 11;17(7):2421–2435. doi: 10.1093/nar/17.7.2421. [DOI] [PMC free article] [PubMed] [Google Scholar]
  20. Roberts R. J., Macelis D. Restriction enzymes and their isoschizomers. Nucleic Acids Res. 1991 Apr 25;19 (Suppl):2077–2109. doi: 10.1093/nar/19.suppl.2077. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Szybalski W. Universal restriction endonucleases: designing novel cleavage specificities by combining adapter oligodeoxynucleotide and enzyme moieties. Gene. 1985;40(2-3):169–173. doi: 10.1016/0378-1119(85)90039-3. [DOI] [PubMed] [Google Scholar]
  22. Wilson G. G. Organization of restriction-modification systems. Nucleic Acids Res. 1991 May 25;19(10):2539–2566. doi: 10.1093/nar/19.10.2539. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES