Abstract
We previously showed that: (i) E.coli threonyl-tRNA synthetase (ThrRS) binds to the leader of its mRNA and represses translation by preventing ribosome binding to its loading site; (ii) the translational operator shares sequence and structure similarities with tRNA(Thr); (iii) it is possible to switch the specificity of the translational control from ThrRS to methionyl-tRNA synthetase (MetRS) by changing the CGU anticodon-like sequence to CAU, the tRNA(Met) anticodon. Here, we show that the wild type (CGU) and the mutated (CAU) operators act as competitive inhibitors of tRNA(Thr) and tRNA(fMet) for aminoacylation catalyzed by E.coli ThrRS and MetRS, respectively. The apparent Kd of the MetRS/CAU operator complex is one order magnitude higher than that of the ThrRS/CGU operator complex. Although ThrRS and MetRS shield the anticodon- and acceptor-like domains of their respective operators, the relative contribution of these two domains differs significantly. As in the threonine system, the interaction of MetRS with the CAU operator occludes ribosome binding to its loading site. The present data demonstrate that the anticodon-like sequence is one major determinant for the identity of the operator and the regulation specificity. It further shows that the tRNA-like operator obeys to tRNA identity rules.
Full text
PDFImages in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Butler J. S., Springer M., Dondon J., Grunberg-Manago M. Posttranscriptional autoregulation of Escherichia coli threonyl tRNA synthetase expression in vivo. J Bacteriol. 1986 Jan;165(1):198–203. doi: 10.1128/jb.165.1.198-203.1986. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eriani G., Delarue M., Poch O., Gangloff J., Moras D. Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature. 1990 Sep 13;347(6289):203–206. doi: 10.1038/347203a0. [DOI] [PubMed] [Google Scholar]
- Graffe M., Dondon J., Caillet J., Romby P., Ehresmann C., Ehresmann B., Springer M. The specificity of translational control switched with transfer RNA identity rules. Science. 1992 Feb 21;255(5047):994–996. doi: 10.1126/science.1372129. [DOI] [PubMed] [Google Scholar]
- Hartz D., McPheeters D. S., Gold L. Influence of mRNA determinants on translation initiation in Escherichia coli. J Mol Biol. 1991 Mar 5;218(1):83–97. doi: 10.1016/0022-2836(91)90875-7. [DOI] [PubMed] [Google Scholar]
- Hartz D., McPheeters D. S., Gold L. Selection of the initiator tRNA by Escherichia coli initiation factors. Genes Dev. 1989 Dec;3(12A):1899–1912. doi: 10.1101/gad.3.12a.1899. [DOI] [PubMed] [Google Scholar]
- Hartz D., McPheeters D. S., Traut R., Gold L. Extension inhibition analysis of translation initiation complexes. Methods Enzymol. 1988;164:419–425. doi: 10.1016/s0076-6879(88)64058-4. [DOI] [PubMed] [Google Scholar]
- Hasegawa T., Miyano M., Himeno H., Sano Y., Kimura K., Shimizu M. Identity determinants of E. coli threonine tRNA. Biochem Biophys Res Commun. 1992 Apr 15;184(1):478–484. doi: 10.1016/0006-291x(92)91219-g. [DOI] [PubMed] [Google Scholar]
- Lestienne P., Plumbridge J. A., Grunberg-Manago M., Blanquet S. Autogenous repression of Escherichia coli threonyl-tRNA synthetase expression in vitro. J Biol Chem. 1984 Apr 25;259(8):5232–5237. [PubMed] [Google Scholar]
- Martinis S. A., Schimmel P. Enzymatic aminoacylation of sequence-specific RNA minihelices and hybrid duplexes with methionine. Proc Natl Acad Sci U S A. 1992 Jan 1;89(1):65–69. doi: 10.1073/pnas.89.1.65. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McClain W. H., Nicholas H. B., Jr Differences between transfer RNA molecules. J Mol Biol. 1987 Apr 20;194(4):635–642. doi: 10.1016/0022-2836(87)90240-3. [DOI] [PubMed] [Google Scholar]
- Meinnel T., Mechulam Y., Blanquet S., Fayat G. Binding of the anticodon domain of tRNA(fMet) to Escherichia coli methionyl-tRNA synthetase. J Mol Biol. 1991 Jul 20;220(2):205–208. doi: 10.1016/0022-2836(91)90003-o. [DOI] [PubMed] [Google Scholar]
- Meinnel T., Mechulam Y., Dardel F., Schmitter J. M., Hountondji C., Brunie S., Dessen P., Fayat G., Blanquet S. Methionyl-tRNA synthetase from E. coli--a review. Biochimie. 1990 Aug;72(8):625–632. doi: 10.1016/0300-9084(90)90126-2. [DOI] [PubMed] [Google Scholar]
- Meinnel T., Mechulam Y., Le Corre D., Panvert M., Blanquet S., Fayat G. Selection of suppressor methionyl-tRNA synthetases: mapping the tRNA anticodon binding site. Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):291–295. doi: 10.1073/pnas.88.1.291. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Moine H., Romby P., Springer M., Grunberg-Manago M., Ebel J. P., Ehresmann B., Ehresmann C. Escherichia coli threonyl-tRNA synthetase and tRNA(Thr) modulate the binding of the ribosome to the translational initiation site of the thrS mRNA. J Mol Biol. 1990 Nov 20;216(2):299–310. doi: 10.1016/S0022-2836(05)80321-3. [DOI] [PubMed] [Google Scholar]
- Moine H., Romby P., Springer M., Grunberg-Manago M., Ebel J. P., Ehresmann C., Ehresmann B. Messenger RNA structure and gene regulation at the translational level in Escherichia coli: the case of threonine:tRNAThr ligase. Proc Natl Acad Sci U S A. 1988 Nov;85(21):7892–7896. doi: 10.1073/pnas.85.21.7892. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mougel M., Eyermann F., Westhof E., Romby P., Expert-Bezançon A., Ebel J. P., Ehresmann B., Ehresmann C. Binding of Escherichia coli ribosomal protein S8 to 16 S rRNA. A model for the interaction and the tertiary structure of the RNA binding site. J Mol Biol. 1987 Nov 5;198(1):91–107. doi: 10.1016/0022-2836(87)90460-8. [DOI] [PubMed] [Google Scholar]
- Muramatsu T., Nishikawa K., Nemoto F., Kuchino Y., Nishimura S., Miyazawa T., Yokoyama S. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature. 1988 Nov 10;336(6195):179–181. doi: 10.1038/336179a0. [DOI] [PubMed] [Google Scholar]
- Normanly J., Abelson J. tRNA identity. Annu Rev Biochem. 1989;58:1029–1049. doi: 10.1146/annurev.bi.58.070189.005121. [DOI] [PubMed] [Google Scholar]
- Park S. J., Schimmel P. Evidence for interaction of an aminoacyl transfer RNA synthetase with a region important for the identity of its cognate transfer RNA. J Biol Chem. 1988 Nov 15;263(32):16527–16530. [PubMed] [Google Scholar]
- Pelka H., Schulman L. H. Study of the interaction of Escherichia coli methionyl-tRNA synthetase with tRNAfMet using chemical and enzymatic probes. Biochemistry. 1986 Jul 29;25(15):4450–4456. doi: 10.1021/bi00363a042. [DOI] [PubMed] [Google Scholar]
- Romby P., Moine H., Lesage P., Graffe M., Dondon J., Ebel J. P., Grunberg-Manago M., Ehresmann B., Ehresmann C., Springer M. The relation between catalytic activity and gene regulation in the case of E coli threonyl-tRNA synthetase. Biochimie. 1990 Jun-Jul;72(6-7):485–494. doi: 10.1016/0300-9084(90)90072-o. [DOI] [PubMed] [Google Scholar]
- Rould M. A., Perona J. J., Söll D., Steitz T. A. Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution. Science. 1989 Dec 1;246(4934):1135–1142. doi: 10.1126/science.2479982. [DOI] [PubMed] [Google Scholar]
- Ruff M., Krishnaswamy S., Boeglin M., Poterszman A., Mitschler A., Podjarny A., Rees B., Thierry J. C., Moras D. Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp). Science. 1991 Jun 21;252(5013):1682–1689. doi: 10.1126/science.2047877. [DOI] [PubMed] [Google Scholar]
- Schatz D., Leberman R., Eckstein F. Interaction of Escherichia coli tRNA(Ser) with its cognate aminoacyl-tRNA synthetase as determined by footprinting with phosphorothioate-containing tRNA transcripts. Proc Natl Acad Sci U S A. 1991 Jul 15;88(14):6132–6136. doi: 10.1073/pnas.88.14.6132. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schulman L. H., Pelka H. An anticodon change switches the identity of E. coli tRNA(mMet) from methionine to threonine. Nucleic Acids Res. 1990 Jan 25;18(2):285–289. doi: 10.1093/nar/18.2.285. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schulman L. H., Pelka H. Anticodon loop size and sequence requirements for recognition of formylmethionine tRNA by methionyl-tRNA synthetase. Proc Natl Acad Sci U S A. 1983 Nov;80(22):6755–6759. doi: 10.1073/pnas.80.22.6755. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schulman L. H., Pelka H. Anticodon switching changes the identity of methionine and valine transfer RNAs. Science. 1988 Nov 4;242(4879):765–768. doi: 10.1126/science.3055296. [DOI] [PubMed] [Google Scholar]
- Springer M., Graffe M., Butler J. S., Grunberg-Manago M. Genetic definition of the translational operator of the threonine-tRNA ligase gene in Escherichia coli. Proc Natl Acad Sci U S A. 1986 Jun;83(12):4384–4388. doi: 10.1073/pnas.83.12.4384. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Springer M., Graffe M., Butler J. S., Grunberg-Manago M. Genetic definition of the translational operator of the threonine-tRNA ligase gene in Escherichia coli. Proc Natl Acad Sci U S A. 1986 Jun;83(12):4384–4388. doi: 10.1073/pnas.83.12.4384. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Springer M., Graffe M., Dondon J., Grunberg-Manago M. tRNA-like structures and gene regulation at the translational level: a case of molecular mimicry in Escherichia coli. EMBO J. 1989 Aug;8(8):2417–2424. doi: 10.1002/j.1460-2075.1989.tb08372.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Theobald A., Springer M., Grunberg-Manago M., Ebel J. P., Giege R. Tertiary structure of Escherichia coli tRNA(3Thr) in solution and interaction of this tRNA with the cognate threonyl-tRNA synthetase. Eur J Biochem. 1988 Aug 15;175(3):511–524. doi: 10.1111/j.1432-1033.1988.tb14223.x. [DOI] [PubMed] [Google Scholar]