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. 1988 Jul 11;16(13):5863–5878. doi: 10.1093/nar/16.13.5863

Genome organization of the killer plasmid pGK12 from Kluyveromyces lactis.

M Tommasino 1, S Ricci 1, C L Galeotti 1
PMCID: PMC336834  PMID: 3041369

Abstract

We have determined the entire sequence of the plasmid K2 from Kluyveromyces lactis which is involved in the maintenance of both killer plasmids in the cell. K2 shares many of the characteristics of the smaller killer plasmid K1: high A+T content (74.7%) and very compact genomic organization. K2 contains ten open reading frames. Some of them overlap on different strands and some on the same strand. Northern blotting of K2 transcripts shows that at least eight ORFs are transcribed. Analysis of the predicted aminoacid sequence of ORF2 from K2 reveals homology with the aminoacid sequence of ORF 1 from K1 and with several viral DNA polymerases. The sequence of K2 from Saccaromyces cerevisiae F102-2 was also determined. Only one nucleotide difference was found between the K2 sequence from the two yeasts. This mutation does not change the genome organization of the plasmid and has only minimal effect on the structure of the encoded proteins.

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Selected References

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  1. Argos P., Tucker A. D., Philipson L. Primary structural relationships may reflect similar DNA replication strategies. Virology. 1986 Mar;149(2):208–216. doi: 10.1016/0042-6822(86)90122-4. [DOI] [PubMed] [Google Scholar]
  2. Clare J., Farabaugh P. Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression. Proc Natl Acad Sci U S A. 1985 May;82(9):2829–2833. doi: 10.1073/pnas.82.9.2829. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387–395. doi: 10.1093/nar/12.1part1.387. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Earl P. L., Jones E. V., Moss B. Homology between DNA polymerases of poxviruses, herpesviruses, and adenoviruses: nucleotide sequence of the vaccinia virus DNA polymerase gene. Proc Natl Acad Sci U S A. 1986 Jun;83(11):3659–3663. doi: 10.1073/pnas.83.11.3659. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Feinberg A. P., Vogelstein B. "A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity". Addendum. Anal Biochem. 1984 Feb;137(1):266–267. doi: 10.1016/0003-2697(84)90381-6. [DOI] [PubMed] [Google Scholar]
  6. Friefeld B. R., Lichy J. H., Field J., Gronostajski R. M., Guggenheimer R. A., Krevolin M. D., Nagata K., Hurwitz J., Horwitz M. S. The in vitro replication of adenovirus DNA. Curr Top Microbiol Immunol. 1984;110:221–255. doi: 10.1007/978-3-642-46494-2_8. [DOI] [PubMed] [Google Scholar]
  7. Fukuhara H. The RF1 gene of the killer DNA of yeast may encode a DNA polymerase. Nucleic Acids Res. 1987 Dec 10;15(23):10046–10046. doi: 10.1093/nar/15.23.10046. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Gunge N., Murata K., Sakaguchi K. Transformation of Saccharomyces cerevisiae with linear DNA killer plasmids from Kluyveromyces lactis. J Bacteriol. 1982 Jul;151(1):462–464. doi: 10.1128/jb.151.1.462-464.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Gunge N., Sakaguchi K. Intergeneric transfer of deoxyribonucleic acid killer plasmids, pGKl1 and pGKl2, from Kluyveromyces lactis into Saccharomyces cerevisiae by cell fusion. J Bacteriol. 1981 Jul;147(1):155–160. doi: 10.1128/jb.147.1.155-160.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Gunge N., Tamaru A., Ozawa F., Sakaguchi K. Isolation and characterization of linear deoxyribonucleic acid plasmids from Kluyveromyces lactis and the plasmid-associated killer character. J Bacteriol. 1981 Jan;145(1):382–390. doi: 10.1128/jb.145.1.382-390.1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Hishinuma F., Nakamura K., Hirai K., Nishizawa R., Gunge N., Maeda T. Cloning and nucleotide sequences of the linear DNA killer plasmids from yeast. Nucleic Acids Res. 1984 Oct 11;12(19):7581–7597. doi: 10.1093/nar/12.19.7581. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Kuzmin E. V., Levchenko I. V. S1 plasmid from cms-S-maize mitochondria encodes a viral type DNA-polymerase. Nucleic Acids Res. 1987 Aug 25;15(16):6758–6758. doi: 10.1093/nar/15.16.6758. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Lichy J. H., Field J., Horwitz M. S., Hurwitz J. Separation of the adenovirus terminal protein precursor from its associated DNA polymerase: role of both proteins in the initiation of adenovirus DNA replication. Proc Natl Acad Sci U S A. 1982 Sep;79(17):5225–5229. doi: 10.1073/pnas.79.17.5225. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Maundrell K., Nurse P., Schönholzer F., Schweingruber M. E. Cloning and characterization of two genes restoring acid phosphatase activity in pho1- mutants of Schizosaccharomyces pombe. Gene. 1985;39(2-3):223–230. doi: 10.1016/0378-1119(85)90316-6. [DOI] [PubMed] [Google Scholar]
  15. Mellor J., Fulton S. M., Dobson M. J., Wilson W., Kingsman S. M., Kingsman A. J. A retrovirus-like strategy for expression of a fusion protein encoded by yeast transposon Ty1. Nature. 1985 Jan 17;313(5999):243–246. doi: 10.1038/313243a0. [DOI] [PubMed] [Google Scholar]
  16. Murphy S., Tripodi M., Melli M. A sequence upstream from the coding region is required for the transcription of the 7SK RNA genes. Nucleic Acids Res. 1986 Dec 9;14(23):9243–9260. doi: 10.1093/nar/14.23.9243. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Paillard M., Sederoff R. R., Levings C. S. Nucleotide sequence of the S-1 mitochondrial DNA from the S cytoplasm of maize. EMBO J. 1985 May;4(5):1125–1128. doi: 10.1002/j.1460-2075.1985.tb03749.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Quinn J. P., McGeoch D. J. DNA sequence of the region in the genome of herpes simplex virus type 1 containing the genes for DNA polymerase and the major DNA binding protein. Nucleic Acids Res. 1985 Nov 25;13(22):8143–8163. doi: 10.1093/nar/13.22.8143. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Salas M. A new mechanism for the initiation of replication of phi 29 and adenovirus DNA: priming by the terminal protein. Curr Top Microbiol Immunol. 1984;109:89–106. doi: 10.1007/978-3-642-69460-8_4. [DOI] [PubMed] [Google Scholar]
  20. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. doi: 10.1073/pnas.74.12.5463. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Sor F., Wésolowski M., Fukuhara H. Inverted terminal repetitions of the two linear DNA associated with the killer character of the yeast Kluyveromyces lactis. Nucleic Acids Res. 1983 Aug 11;11(15):5037–5044. doi: 10.1093/nar/11.15.5037. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Stam J. C., Kwakman J., Meijer M., Stuitje A. R. Efficient isolation of the linear DNA killer plasmid of Kluyveromyces lactis: evidence for location and expression in the cytoplasm and characterization of their terminally bound proteins. Nucleic Acids Res. 1986 Sep 11;14(17):6871–6884. doi: 10.1093/nar/14.17.6871. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Stark M. J., Boyd A. The killer toxin of Kluyveromyces lactis: characterization of the toxin subunits and identification of the genes which encode them. EMBO J. 1986 Aug;5(8):1995–2002. doi: 10.1002/j.1460-2075.1986.tb04455.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Stark M. J., Mileham A. J., Romanos M. A., Boyd A. Nucleotide sequence and transcription analysis of a linear DNA plasmid associated with the killer character of the yeast Kluyveromyces lactis. Nucleic Acids Res. 1984 Aug 10;12(15):6011–6030. doi: 10.1093/nar/12.15.6011. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Stillman B. W., Tamanoi F., Mathews M. B. Purification of an adenovirus-coded DNA polymerase that is required for initiation of DNA replication. Cell. 1982 Dec;31(3 Pt 2):613–623. doi: 10.1016/0092-8674(82)90317-8. [DOI] [PubMed] [Google Scholar]
  26. Tokunaga M., Wada N., Hishinuma F. Expression and identification of immunity determinants on linear DNA killer plasmids pGKL1 and pGKL2 in Kluyveromyces lactis. Nucleic Acids Res. 1987 Feb 11;15(3):1031–1046. doi: 10.1093/nar/15.3.1031. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Yoshikawa H., Ito J. Nucleotide sequence of the major early region of bacteriophage phi 29. Gene. 1982 Mar;17(3):323–335. doi: 10.1016/0378-1119(82)90149-4. [DOI] [PubMed] [Google Scholar]

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