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. 1985 Apr 11;13(7):2267–2279. doi: 10.1093/nar/13.7.2267

Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.

N Ogasawara, S Moriya, H Yoshikawa
PMCID: PMC341154  PMID: 2987848

Abstract

We have determined nucleotide sequence of some 10,000 base pairs (bp) in the oriC region of the Bacillus subtilis chromosome. Initiation sites of transcription from this region were determined in vivo by the S1-mapping method. Five major initiation sites were found in the leader sequences of five open reading frames (ORF) deduced from the nucleotide sequence. The sixth site is located inside the ORF323("recF"). Putative promoters were found for each transcript. Function of these promoters was demonstrated in Escherichia coli by the Maxi-cell method using appropriate fragments cloned in pBR vectors. Based on these results, genes in 10,000 bp oriC region are divided into 4 transcriptional units. GyrB composes one unit with two other ORFs, while gyrA constitutes a single unit by itself. The promoters for ORF446("dnaA") and ORF378("dnaN") are located within the putative signal sequences for oriC. Transcription from these promoters is dependent on a dna-initiation gene, dnaB.

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Selected References

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  1. Blanar M. A., Sandler S. J., Armengod M. E., Ream L. W., Clark A. J. Molecular analysis of the recF gene of Escherichia coli. Proc Natl Acad Sci U S A. 1984 Aug;81(15):4622–4626. doi: 10.1073/pnas.81.15.4622. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Fuller R. S., Funnell B. E., Kornberg A. The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites. Cell. 1984 Oct;38(3):889–900. doi: 10.1016/0092-8674(84)90284-8. [DOI] [PubMed] [Google Scholar]
  3. Hansen E. B., Hansen F. G., von Meyenburg K. The nucleotide sequence of the dnaA gene and the first part of the dnaN gene of Escherichia coli K-12. Nucleic Acids Res. 1982 Nov 25;10(22):7373–7385. doi: 10.1093/nar/10.22.7373. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Hansen F. G., Hansen E. B., Atlung T. The nucleotide sequence of the dnaA gene promoter and of the adjacent rpmH gene, coding for the ribosomal protein L34, of Escherichia coli. EMBO J. 1982;1(9):1043–1048. doi: 10.1002/j.1460-2075.1982.tb01294.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Horii T., Ogawa T., Ogawa H. Nucleotide sequence of the lexA gene of E. coli. Cell. 1981 Mar;23(3):689–697. doi: 10.1016/0092-8674(81)90432-3. [DOI] [PubMed] [Google Scholar]
  6. Leonard A. C., Hucul J. A., Helmstetter C. E. Kinetics of minichromosome replication in Escherichia coli B/r. J Bacteriol. 1982 Feb;149(2):499–507. doi: 10.1128/jb.149.2.499-507.1982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Meadow N. D., Saffen D. W., Dottin R. P., Roseman S. Molecular cloning of the crr gene and evidence that it is the structural gene for IIIGlc, a phosphocarrier protein of the bacterial phosphotransferase system. Proc Natl Acad Sci U S A. 1982 Apr;79(8):2528–2532. doi: 10.1073/pnas.79.8.2528. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Murakami S., Inuzuka N., Yamaguchi M., Yamaguchi K., Yoshikawa H. Initiation of DNA replication in Bacillus subtilis. III. Analysis of molecular events involved in the initiation using a temperature-sensitive dna mutant. J Mol Biol. 1976 Dec 25;108(4):683–704. doi: 10.1016/s0022-2836(76)80112-x. [DOI] [PubMed] [Google Scholar]
  9. Ogasawara N., Mizumoto S., Yoshikawa H. Replication origin of the Bacillus subtilis chromosome determined by hybridization of the first-replicating DNA with cloned fragments from the replication origin region of the chromosome. Gene. 1984 Oct;30(1-3):173–182. doi: 10.1016/0378-1119(84)90118-5. [DOI] [PubMed] [Google Scholar]
  10. Ogasawara N., Moriya S., Yoshikawa H. Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome. Nucleic Acids Res. 1983 Sep 24;11(18):6301–6318. doi: 10.1093/nar/11.18.6301. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Ogasawara N., Seiki M., Yoshikawa H. Initiation of DNA replication in Bacillus subtilis. V. Role of DNA gyrase and superhelical structure in initiation. Mol Gen Genet. 1981;181(3):332–337. doi: 10.1007/BF00425607. [DOI] [PubMed] [Google Scholar]
  12. Ogasawara N., Seiki M., Yoshikawa H. Replication origin region of Bacillus subtilis chromosome contains two rRNA operons. J Bacteriol. 1983 Apr;154(1):50–57. doi: 10.1128/jb.154.1.50-57.1983. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Ohmori H., Kimura M., Nagata T., Sakakibara Y. Structural analysis of the dnaA and dnaN genes of Escherichia coli. Gene. 1984 May;28(2):159–170. doi: 10.1016/0378-1119(84)90253-1. [DOI] [PubMed] [Google Scholar]
  14. Oka A., Sugimoto K., Takanami M., Hirota Y. Replication origin of the Escherichia coli K-12 chromosome: the size and structure of the minimum DNA segment carrying the information for autonomous replication. Mol Gen Genet. 1980 Apr;178(1):9–20. doi: 10.1007/BF00267207. [DOI] [PubMed] [Google Scholar]
  15. Sancar A., Wharton R. P., Seltzer S., Kacinski B. M., Clarke N. D., Rupp W. D. Identification of the uvrA gene product. J Mol Biol. 1981 May 5;148(1):45–62. doi: 10.1016/0022-2836(81)90234-5. [DOI] [PubMed] [Google Scholar]
  16. Seiki M., Ogasawara N., Yoshikawa H. Identification of a suppressor sequence for DNA replication in the replication origin region of the Bacillus subtilis chromosome. Proc Natl Acad Sci U S A. 1982 Jul;79(14):4285–4289. doi: 10.1073/pnas.79.14.4285. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Yoshikawa H. DNA synthesis during germination of Bacillus subtilis spores. Proc Natl Acad Sci U S A. 1965 Jun;53(6):1476–1483. doi: 10.1073/pnas.53.6.1476. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Yoshikawa H., Ogasawara N., Seiki M. Initiation of DNA replication in Bacillus subtilis. IV. The effect of an intercalating dye, ethidium bromide. Mol Gen Genet. 1980;179(2):265–272. doi: 10.1007/BF00425453. [DOI] [PubMed] [Google Scholar]

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