Abstract
The discovery of translocations that involve one of the genes of the ETS family (ERG, ETV1, ETV4 and ETV5) has been a major advance in understanding the molecular basis of prostate cancer (PC). Each one of these translocations results in deregulated expression of one of the ETS proteins. Here, we focus on the mechanism whereby overexpression of the ETV4 gene mediates oncogenesis in the prostate. By siRNA technology, we show that ETV4 inhibition in the PC3 cancer cell line reduces not only cell mobility and anchorage-independent growth, but also cell proliferation, cell cycle progression and tumor growth in a xenograft model. Conversely, ETV4 overexpression in the nonmalignant human prostate cell line (RWPE) increases anchorage-independent growth, cell mobility and cell proliferation, which is probably mediated by downregulation of p21, producing accelerated progression through the cell cycle. ETV4 overexpression is associated with changes in the pattern of E-cadherin and N-cadherin expression; the cells also become spindle-shaped, and these changes are characteristic of the so-called epithelial to mesenchymal transition (EMT). In RWPE cells overexpressing ETV4 EMT results from a marked increase in EMT-specific transcription factors such as TWIST1, SLUG1, ZEB1 and ZEB2. Thus, whereas ETV4 shares with the other ETS proteins (ERG, ETV5 and ETV1) a major role in invasiveness and cell migration, it emerges as unique in that it increases at the same time also the rate of proliferation of PC cells. Considering the wide spectrum in the clinical course of patients with PC, it may be highly relevant that ETV4 is capable of inducing most and perhaps all of the features that make a tumor aggressive.
Keywords: prostate cancer, ETV4, epithelial to mesenchymal transition, cell cycle, ETS proteins, chromosomal translocations
Introduction
Chromosomal translocations have been regarded for a long time as characteristic of hematological malignancies and sarcomas, as though they were not relevant to epithelial tumors. In recent years, it has become instead clear that chromosomal translocations are frequent in epithelial tumors:1 indeed they are present in 40–80% of prostate cancer (PC) cases. In most cases the translocation brings about the fusion of the androgen-regulated gene, TMPRSS2, with one of the members of the ETS family of transcription factors, the most frequent being ERG.2 In this case, the promoter of TMPRSS2 replaces the ERG promoter with the consequence that ERG expression will become androgen dependent. In some cases, the TMPRSS2 promoter is juxtaposed to one of other ETS family members: ETV1, ETV4, ETV5 and FLI1. Rarely, the translocation juxtaposes one ETS gene to the promoter of a gene highly expressed in the prostate other than TMPRSS2.3 In any case, the common result is that the involved ETS gene will be aberrantly expressed in the prostate.
The role of ERG overexpression has been investigated in various models (including transgenic mice) with somewhat controversial results: some studies suggest that ERG was sufficient for cancer development4, 5 whereas others suggest that additional genetic changes are required:6, 7 either way, it is currently accepted that ERG overexpression has a role in PC pathogenesis. This notion would be greatly strengthened by finding that it applies to other ETS family members involved in translocations in PC. Here, we have focused on one of these, ETV4. ETV4 is overexpressed in a proportion of PC cases: in some cases overexpression is associated with translocations of ETV4 to the promoter of a gene highly expressed in prostate (TMPRSS2, KLK2, DDX5 and CANT1);8, 9, 10 in others it has been observed without any detectable translocation.11, 12 ETV4 is also overexpressed in other types of cancers, including head and neck, lung and breast cancer;13, 14, 15 and its overexpression has been associated with metastasis and with poor prognosis.16 ETV4 expression has been correlated with the activation of cancer-related genes relevant to cell proliferation and to invasiveness.14, 17, 18, 19 On the other hand, some reports have suggested that ETV4 may function as a tumor suppressor.20, 21
Evidence has accumulated over the last years that a major mechanism underlying tumor invasion is that epithelial tumor cells may acquire a mesenchymal phenotype.22, 23 This is similar to a process, crucial for embryonic development, called epithelial to mesenchymal transition (EMT).24 EMT-like processes may have a central role in cancer progression;25 accordingly, the acquisition of an EMT-like phenotype has been associated with the ability of cancer cells to migrate, to invade and to metastasize.26, 27 EMT has been reported in different cancers including prostate28, 29 and it has been also associated with self-renewal of cancer cells.30
By overexpression, as well as by silencing, we have investigated the role of ETV4 in PC. We have found that ETV4 expression promotes proliferation, anchorage-independent growth and tumor growth in a xenograft model. In addition, we have found that ETV4 expression affects cell mobility and favors EMT.
Results
Downregulation of ETV4 inhibits proliferation, anchorage-independent growth and migration in PC cells
We measured ETV4 expression in normal prostate tissue, in one immortalized but nonmalignant human prostate cell line (RWPE), and in four human PC cell lines (DU145, PC3, LnCap and V-Cap). ETV4 expression was undetectable in LnCap and in V-Cap cells (Figure 1a, Supplementary Figure S1). ETV4 mRNA levels were increased in PC3 (sevenfold) and were similar to normal prostate tissue in RWPE and DU145 (Figure 1a). However, the level of ETV4 protein in PC DU145 cells was about fivefold higher than in the nonmalignant RWPE cells (Figure 1b). Thus, ETV4 is overexpressed in DU145 and in PC3 cells: this overexpression may be causative of their cancer phenotype.
ETV4 expression was silenced by two short hairpin RNAs (sh3 and sh65) that, either in a constitutive or in an inducible31 system, produced a marked and durable reduction of ETV4 mRNA levels in both PC3 and DU145 cells (Figures 1c and e). This reduction was confirmed in terms of protein levels (Figures 1d and f). By using doxycycline-inducible stably transduced cell lines, we have reduced the experimental variability of growth assays, because it was possible to test in parallel exactly the same cells with or without ETV4 silencing.
Using this system, we found that after 14 days of ETV4 shRNA induction the number of DU145 and PC3 cells was reduced to 47.6±10.5% and 20.7±5.6%, respectively. In both of these cell lines, a similar reduction in H3 thymidine uptake was also observed upon ETV4 silencing but not after induction of an irrelevant shRNA (Figures 2a and b). Furthermore, ETV4 shRNA induction, obtained with either sh3 or sh65, strongly impaired the ability of PC cell lines to form colonies in soft agar (Figure 2c). This suggests that ETV4 expression is important in determining the proliferation rate and the anchorage-independent growth of both PC3 and DU145 cells. In addition, the fact that similar results were obtained with two different shRNAs supports the notion that their effect is mediated by specific reduction of ETV4 mRNA and not by off-target modulation.
ETS proteins, such as ERG and ETV1, have an important role in cell motility and in the invasive tendency of prostate cell lines;5, 32 and ETV4 itself is important for motility of PC, breast cancer and colon cancer cells.19, 33, 34 Both PC3 and DU145 cells are able to efficiently migrate in the wound-healing assay and to invade matrigel. After doxycycline induction, the migration of PC3 cells containing an inducible ETV4 shRNA was 3.5±0.8-fold less than that of PC3 cells containing an irrelevant shRNA (P<0.01; Figure 2d). In a similar way, doxycycline reduced by 2.9±0.2-fold the number of matrigel invading cells of PC3 containing an inducible ETV4 shRNA, whereas the invading ability of PC3 containing the irrelevant shRNA was only slightly reduced (1.4-fold). In contrast, with DU145 cells ETV4 inhibition did not affect migration (Figure 2d) or invading ability (data not shown). Matrix metalloproteinases (MMPs) have pivotal roles in invasion through the degradation of extracellular matrix; ETV4 is known to regulate some of these MMPs;19, 34, 35 indeed, we found that ETV4 silencing in PC3 cells was associated with reduced expression of MMP1 (0.28±0.2) and MMP3 (0.14±0.1), a slight decrease of MMP9 (0.7±0.2), and no variation of MMP7 (1.0±0.1), PLAU (1.2±0.1) and ADAMs (ADAM9: 1.0±0.2; ADAM10: 1.2±0.3; ADAM17: 1.2±0.1). In addition, there was an increased expression of the metalloproteinase inhibitor TIMP1 (3.24±0.1) but not of TIMP2 (1.0±0.1).36 In the DU145 cells, we did not find any variation of MMPs (MMP1: 1.2±0.1; MMP9: 1.1±0.1), ADAMs (ADAM9: 1.2±0.2; ADAM10: 1.2±0.1; ADAM17: 1.1±0.4) and TIMPs (TIMP1: 0.9±0.1; TIMP2: 1,2±0.2) upon ETV4 silencing.
Overexpression of ETV4 stimulates proliferation, anchorage-independent growth and migration in the nonmalignant RWPE prostate cells
To investigate directly the effect of ETV4 overexpression, we have constructed two expression vectors: one encoding the full length ETV4 cDNA (FL) and one encoding the TMPRSS2–ETV4 (TME) fusion cDNA found in PC patients.8 The nonmalignant RWPE human prostate cell line stably transfected with either the FL or the TME vector showed an increased expression of ETV4 at both mRNA (about 7.5-fold) and protein level (five to sixfold; Figures 3a and b) compared with controls RWPE cells (untransfected or luciferase transfected).
By H3 thymidine incorporation, we found that RWPE cells transfected with either the FL or the TME vector have an increased rate of proliferation compared with controls (Figure 3c). ETV4 overexpression increased the ability of RWPE cells to form colonies in soft agar (Figure 3d), providing RWPE cells with anchorage-independent growth, an important characteristic of cancer cells. In addition, in wound-healing and in matrigel invasion assays ETV4-transfected RWPE cells showed increased migration (Figure 3e) and invasion ability when compared with controls (Figure 3f). These results confirmed that also in RWPE cells ETV4 has a role in cell proliferation, anchorage-independent growth, migration and invasion ability.
Downregulation of ETV4 inhibits tumor growth in immune-deficient mice
Many types of cancer cells give tumors when injected in immune-deficient mice (xenograft model): this is true for both PC3 and DU145 cells.37, 38 To reduce experimental variability of such experiments, we have used PC3 and DU145 stably transduced with the doxycycline-inducible shRNA against ETV4. Thus, we have injected in each mouse cells derived from exactly the same culture and, after 2 months, we have compared the size of xenografts in mice assigned randomly to drink water with or without doxycycline. The average weight of PC3 xenografts from mice treated with doxycycline was about half of control mice (P<0.04). With DU145 xenografts the effect of ETV4 inhibition was even stronger with a weight reduction of about 70% (P<0.02; Figures 4a and b). In PC3 xenografts harvested from doxycycline-treated mice the ratio at DNA level ETV4-silencing vector/glyceraldehyde-3-phosphate dehydrogenase was much lower (about 4%) than in xenografts from control mice suggesting that in doxycycline-treated mice the tumors originate mainly or entirely from the few untransfected cells included in the initial injection. Thus, ETV4 downregulation reduces the ability of PC3 and in DU145 cells to form tumors in mice, supporting the notion that ETV4 expression is necessary to maintain the cancer status of these human PC cell lines.
ETV4 affects cell growth by modulating cell cycle
In principle, cell growth could be increased either by an increased rate of cell proliferation or by a decreased rate of apoptosis. By flow cytometry, we did not observe any significant variation of apoptotic cells percentage neither after ETV4 silencing in PC3 and DU145 cells nor after ETV4 overexpression in RWPE cells (data not shown).
Next, we analyzed cell cycle progression. With ETV4 silenced, 4 h after synchronization with hydroxyurea, the fraction of PC3 cells in S phase was reduced in comparison with controls (Figure 5a), indicating that silencing of ETV4 results in a slower cell cycle progression.
An analysis of the cell cycle in RWPE cells overexpressing ETV4 gave a mirror image of the above: that is, compared with controls there was an increase in the fraction of cells in S phase after 4 h after synchronization with hydroxyurea (Figure 5b). We have tested some of the proteins known to be involved in cell cycle regulation.39, 40 In RWPE-overexpressing ETV4, we have found reduced expression of P21 (WAF1/CIP1) and P27, together with a slight increase of MYC, CHECK1 and MCM7 expression. In the ETV4-silenced PC3, we have found increased expression of P21 (Figures 5c and d) and reduced expression of MYC, CHECK1 and MCM7 (Figure 5c). These results suggest a direct or indirect role of ETV4 in cell cycle regulation.
ETV4 overexpression induces EMT in nonmalignant RWPE prostate cells
ETV4 expression in the nonmalignant RWPE cells results in an increase of their ability to migrate and invading that is paralleled by the modulation of the expression of genes involved in this function such as metalloproteinases and their inhibitors. Specifically, we found increased expression of MMP2 (TME-RWPE, 7.4±1.5; FL-RWPE, 41±5.5), MMP3 (TME-RWPE, 2.3±0.2; FL-RWPE, 16±1.2) and a slight reduction of TIMP1 (TME-RWPE, 0.5±0.1; FL-RWPE, 0.8±0.1).
We observed that RWPE cells transfected with ETV4 expression vectors underwent shape changes. Spindle-shaped (mesenchymal-like) cells are rare in control RWPE cells (about 1%); in RWPE transfected with either TME or FL the frequency of spindle-shaped cells increased to 22% and 53%, respectively (Figure 6a). In addition, molecular markers of EMT were also affected. Overexpression of ETV4 was associated with decreased expression of E-cadherin and Zonula-occludens 1 (epithelial markers) and increased expression of vimentin, N-cadherin and cadherin-11 (mesenchymal markers) (Figures 6b and c). In addition, luciferase-transfected RWPE cells do not express N-cadherin, whereas E-cadherin is expressed and localized on the plasma membrane. In keeping with the acquisition of mesenchymal morphology, we found that in RWPE cells overexpressing ETV4, the epithelial marker protein E-cadherin is reduced and shifted from the plasma membrane to the cytoplasm (Figure 6d). In parallel, there is upregulation of the mesenchymal protein N-cadherin, which is now seen in both the cytoplasm and the plasma membrane (Figure 6d). We can therefore presume that the morphological changes of RWPE cells induced by ETV4 expression are mediated by changes in the levels and intracellular localization of E-cadherin and N-cadherin typical of mesenchymal cells. Next, we have tested for proteins that are known regulators of E-cadherin. ETV4-transfected RWPE cells have an increased expression of TWIST1, ZEB1, ZEB2, FOXC2 and TCF4, with only a slight increase of SLUG and TCF3 (Figures 7a and b). Interestingly, there was no variation of SNAIL1 (Figures 7a and b) and no expression of KLF8 and Goosecoid. In addition, we found no variations in the levels of two regulators of ZEB2,41 such as SPINT1 and IL2R (data not shown).
EMT is often associated with upregulation of the WNT pathway, and the overexpression of some components of this pathway has been reported in RWPE cells overexpressing ERG.42 In RWPE cells expressing ETV4, we found a marked increase of FZD4 (TME-RWPE, 7.0±4.0; FL-RWPE, 5.1±0.8) and a slight increase of WNT7A expression (TME-RWPE, 2.4±0.8; FL-RWPE, 1.6±0.40).
Taken together, these data indicate that ETV4 is a powerful inducer of EMT: the increase of several transcription factors relevant to EMT is in keeping with this notion.
Discussion
The discovery of translocations involving ETS proteins, of which TMPRSS2-ERG has been the trailblazer, is a major advance in understanding the molecular basis of PC. Among the ETS proteins, ERG, ETV5 and ETV1 have emerged as major factors in invasiveness and cell migration, but not in fostering cell proliferation;4,5,32 indeed, in a mouse model the prostate-specific overexpression of ERG has proven important in cancer progression, but its ability to initiate cancer is still controversial.4, 5, 6, 7 In contrast, we show here that ETV4, an ETS protein overexpressed in several types of carcinomas (that is, breast, lung and colon) and a partner of TMPRSS2 in chromosomal translocations found in PC, exerts a powerful function not only in invasiveness and in migration, but also in cell proliferation.
For our studies, we have obtained inducible silencing of ETV4 in two PC cell lines that overexpress this protein: PC3 and DU145. Interestingly, in PC3 the high level of ETV4 results from a high level of gene transcript; in DU 145, the ETV4 protein is just as high, despite a level of ETV4 mRNA comparable to that of the nonmalignant prostate cell line RWPE.
ETV4 confers migration and invading ability to PC cells
Both PC3 and DU145 cells are able to efficiently migrate in the wound-healing assay and to invade in the matrigel assay. ETV4 silencing reduces the migration and invasion of PC3 cells33 but not that of DU145 cells. In a variety of tissues ETV4 is a transcriptional activator of several MMPs,35, 43, 44 endopeptidases capable of degrading the extracellular matrix and thus promoting tumor invasion.45 Indeed, when we silenced ETV4 in PC3 cells the expression of MMP1, MMP3 and MMP9 also decreased; however, this was not the case in DU145 cells, suggesting that in these cells the mechanism of MMPs regulation is different. In complementary experiments, ETV4 overexpression confers migration and invading ability to the nonmalignant RWPE cells, and this is probably mediated by increased expression of MMP2 and MMP3.
ETV4 is involved in cell proliferation and in cell cycle regulation
We have confirmed previous evidence that ETV4 silencing reduces the anchorage-independent growth of PC3 cells,33 and we have shown here that this also applied to DU145 cells. In addition, we have shown that ETV4 expression increases anchorage-independent growth of RWPE cells. Whereas these data already suggest that ETV4 overexpression is oncogene-like, we have also uncovered an effect of ETV4 directed onto cell proliferation. Indeed, the progression of PC3 cells through the cell cycle is slowed down by ETV4 silencing; whereas the progression of RWPE cells through the cell cycle is accelerated by ETV4 expression. This effect on the rate of cycling appears to be mediated by or associated with the modulation of the cell cycle genes P21 (WAF1/CIP1), MYC, MCM7 and CHECK1; in RWPE cells also P27 (KIP1) is downregulated. Thus, ETV4 overexpression promotes cell cycle progression of the nonmalignant RWPE prostate cells probably by causing a reduction in P21 expression: accordingly, ETV4 silencing increases the levels of P21 in PC3 cells. These data are strengthened by the fact that for most genes the downregulation in PC3 is the mirror image of the upregulation in RWPE cells. The mechanism by which ETV4 hinders P21 transcription remains to be investigated. As P53 is a major activator of P21 transcription, one might have presumed that the ETV4 effect is mediated by P53.46, 47 However, this effect is seen even in PC3 that do not have P53 cells.48 It is possible that ETV4 downregulates directly P21 gene, resembling the downregulation of the ErbB2 (HER-2/neu) gene reported in breast and ovarian cancer cells as a result of ETV4 binding to the ErbB2 promoter.20, 21 However, it is also possible that part of the effect of ETV4 on P21 is mediated by a slightly increase of the expression of MYC and of its targets,39, 49 which we have observed in prostate cell lines overexpressing ETV4.
ETV4 overexpression activates EMT
The acquisition of invasiveness and metastatic capabilities by epithelial tumor cells is associated with a set of morphological and functional changes that are similar to EMT.23, 25 Various studies have reported about EMT-like process in PC (reviewed in Nauseef and Henry50) and in prostate cell lines after different stimuli (transforming growth factor-β,51, 52 DAB2IP53, 54). Recently, it has been reported that the TMPRSS2-ERG translocation is associated with EMT.41, 42 Here, we have shown that overexpression of ETV4 in RWPE cells induces EMT changes: in fact, not only the cells did acquire a fibroblast-like shape, but this was also associated with an increased expression of mesenchymal markers (vimentin, N-cadherin and cadherin-11) and a decreased expression of epithelial markers (E-cadherin, zonula occludens 1). Specifically, the reduction of the epithelial marker protein E-cadherin paralleled quantitatively an increase in the mesenchymal marker protein N-cadherin on the cell membrane (Figure 6d). Thus, just as in lung cancer cells55 and in ovarian cancer cells,56 ETV4 expression is able to induce EMT transition also in PC cells.
As for the mechanism whereby ETV4 can induce EMT, this is probably mediated by several transcription factors, including members of the Snail family (SNAIL1, SNAIL2/SLUG), of the zinc finger E-box-binding homeobox family (ZEB1 and ZEB2), TCF3 and KLF826, 57, 58 that directly repress E-cadherin transcription, and others that are indirect E-cadherin repressors (the basic helix loop-helix factor TWIST1, Goosecoid, FOXC2 and TCF4).23, 59, 60, 61
Recently, it has been found that ETV4 upregulates TWIST1 in a murine breast cancer cell line62 and SNAIL1 in MCF10a (an immortalized nontumorigenic human breast cell line);63 in addition, a direct correlation between the mRNA levels of ETV4 and SNAIL1 has been observed in breast cancer patients.63 We show here that ETV4 expression in the nonmalignant RWPE prostate cells results in a strong increase of TWIST1, ZEB1 and ZEB2 expression; but, unlike in breast cell lines, not that of SNAIL1: this suggests, that the mechanism whereby ETV4 induces EMT is at least in part tissue specific.
ETV4 resembles ERG in some of the mechanisms leading to EMT, such as activation of the WNT pathway42 and induction of ZEB1 and ZEB2.41 However, ETV4 differs from ERG because it does not affect the expression of ZEB2 regulators. At any rate, although the mechanism through which ETV4 and ERG induce EMT may be somewhat different, it appears that EMT is a final common pathway through which these ETS proteins exert their oncogenic potential in prostate cells.
Conclusion
ETV4 is not alone in causing EMT, but what sets it apart from the other ETS proteins, we have mentioned, is that it exerts also a major effect on the rate of cell proliferation. This finding is novel with respect to prostate, and it confirms what has been observed for other types of cancer.18, 64, 65 Our findings in complementary cellular models of PC strongly support the notion that a certain level of expression of ETV4, by affecting positively both proliferation and invasiveness, is capable of inducing most and possibly all neoplastic features of PC. Most important, these findings have been confirmed in vivo in xenografts. Thus, it is possible that ETV4 overexpression, whether driven by the TMPRSS2 promoter or otherwise, may turn out to be a more powerful oncogene than others. This is of considerable importance, as the correlation between translocations involving ETS genes and the clinical course of PC is still controversial. From this point of view, it is tempting to regard ETV4 as a potential target for new therapeutic approaches.
Materials and methods
Vectors
shRNAs against ETV4 (NM_001986) were designed with the ‘siRNA selection program' (Whitehead Institute: http://jura.wi.mit.edu/siRNAext): GGCGCTTCCCAACTTCATA (sh65) and CCCTGTGTACATATAAATGAA (sh3). These shRNAs and an irrelevant shRNA (GCCTATTTACGCCTGACAA) were cloned in the pLVTHM lentiviral plasmid (gift of D Trono): a vector whose shRNA expression is doxycycline-inducible in cells expressing the modified tetracycline repressor tTR-Krab. The fragment containing the tTR-Krab under the control of the human EF1a promoter, excised from the pLV-tTRKrab plasmid,31 was cloned into pcDNA3 to generate the pcEF-Krab vector. shRNA vectors were used to transduce prostate cells transfected (doxycycline-inducible ETV4 silencing) or not transfected (constitutive ETV4 silencing) with pcEF-Krab.
The FL-ETV4 vector was obtained cloning the human ETV4 cDNA, amplified from PC3 cells, in a pLG4.2 vector (Promega, Madison, WI, USA) derivative containing the EF1a promoter. The TME-ETV4 vector was obtained from the FL-ETV4 replacing the 5′ end of ETV4 with a PCR amplicon in which we have introduced the 5′ portion of TMPRSS2–ETV4 fusion gene.8
Cell lines
Du145, PC3, LnCap and Hek293 (IST Cell Bank and Cell Factory, Genoa, Italy), V-Cap and RWPE (American Type Culture Collection, Manassas, VA, USA) cell lines were cultured according to cell-bank instructions. Serum-free KER medium for RWPE was supplemented with epidermal growth factor and Bovine Pituitary Extract (Gibco, Carlsband, CA, USA).
Du145 and PC3 cells were electroporated with pEF1-Krab plasmid and selected with G418 (Sigma, St Louis, MO, USA). The clones expressing higher Krab levels were stably transduced by calcium phosphate precipitation66 with doxycycline-inducible shRNA pLVTHM vectors. shRNAs expression was induced by doxycycline (0.5 μg/ml, Sigma) for at least 5 days. RWPE cells were stably transfected with FL-ETV4, TME-ETV4 and luciferase-containing vector using Lipofectamine (Invitrogen, Carlsbad, CA, USA) and selected with puromycin (Sigma).
Quantitative real-time PCR
Total RNA was isolated with the RNeasy Mini Kit (Qiagen, Valencia, CA, USA) and reverse transcribed (iScript, Biorad, Hercules, CA, USA). The expression of genes listed in Table 1 was quantified by quantitative real-time PCR (SsoFast EvaGreen Supermix with CFX96 thermocycler: Biorad).
Table 1. Sequences of oligonucleotides used for quantitative RT–PCR.
Primer name | Forward primer sequence | Reverse primer sequence |
---|---|---|
ETV4 | 5′-GCTCGCTGAAGCTCAGGT-3′ | 5′-TCCTTCTTGATCCTGGTGGT-3′ |
GAPDH | 5′-AACGGATTTGGTCGTATTGGGC-3′ | 5′-TTGATTTTGGAGGGATCTCG-3′ |
TBP | 5′-CCACAGCTCTTCCACTCACA-3′ | 5′-GCGGTACAATCCCAGAACTC-3′ |
MMP1 | 5′-AACTCGGCCATTCTCTTGGA-3′ | 5′-TGGCTTGGATGCCATCAAT-3′ |
MMP2 | 5′-ACGACCGCGACAAGAAGTAT-3′ | 5′-ATTTGTTGCCCAGGAAAGTG-3′ |
MMP3 | 5′-ATGCAGAAGTTCCTTGGATTGG-3′ | 5′-GATGCCAGGAAAGGTTCTGAAG-3′ |
MMP7 | 5′-GCTGGCTCATGCCTTTGC-3′ | 5′-TCATGAGTTGCAGCATACAGGAA-3′ |
MMP9 | 5′-GGGCTCCCGTCCTGCTT-3′ | 5′-CCTCCACTCCTCCCTTTCCT-3′ |
UPAR | 5′-TCTGCAGGACCACGATCGT-3′ | 5′-TCTTCAAGCCAGTCCGATAGC-3′ |
UPA | 5′-GATCCCCAGTTTGGCACAAG-3′ | 5′-ACACTCCCGGTGGGAAATC-3′ |
TIMP1 | 5′-GGGACACCAGAAGTCAACCA-3′ | 5′-GGCTTGGAACCCTTTATACATC-3′ |
TIMP2 | 5′-CCACCCAGAAGAAGAGCCTGA-3′ | 5′-GTGACCCAGTCCATCCAGAG-3′ |
ADAM9 | 5′-CAGATGGCAAAAATCAAGCA-3′ | 5′-GATGGGAACTGCTGAGGTTG-3′ |
ADAM10 | 5′-TCCACAGCCCATTCAGCAA-3′ | 5′-AGGCACTAGGAAGAACCAA-3′ |
ADAM17 | 5′-TTCACGTTTGCAGTCTCCAA-3′ | 5′-ATGTATCTGTAGAAGCGATGATCTG-3′ |
ADAMTS1 | 5′-AAGGACAGGTGCAAGCTCAT-3′ | 5′-GAGGTGGAATCTGGGCTACA-3′ |
P27 | 5′-AATAAGGAAGCGACCTGCAA-3′ | 5′-TTCTGAGGCCAGGCTTCTT-3′ |
p21 | 5′-CCATGTGGACCTGTCACTGT-3′ | 5′-TGGTAGAAATCTGTCATGCTGGTC-3′ |
MYC | 5′-TGCAGCTGCTTAGACGCTGG-3′ | 5′-CGAGGTCATAGTTCCTGTTGG-3′ |
CHEK1 | 5′-TGGTATTGGAATAACTCACAGGG-3′ | 5′-CCGAAATACTGTTGCCAAGCC-3′ |
MCM7 | 5′-CGAAGCTCTTTGCTGATGCC-3′ | 5′-CCGATGCTCAATGTAAACGTCC-3′ |
VIM | 5′-CGCCATCAACACCGAGTTC-3′ | 5′-ATCTTATTCTGCTGCTCCAGGAA-3′ |
E-cadherin | 5′-GAACGCATTGCCACATACAC-3′ | 5′-ATTCGGGCTTGTTGTCATTC-3′ |
N-cadherin | 5′-TCAGTGGCGGAGATCCTACT-3′ | 5′-GTGCTGAATTCCCTTGGCTA-3′ |
11-cadherin | 5′-CAGCCCGATAAGGTATTCCA-3′ | 5′-TGTGGATTTCTGCTGCAAAG-3′ |
SNAIL1 | 5′-GCGAGCTGCAGGACTCTAAT-3′ | 5′-GGACAGAGTCCCAGATGAGC-3′ |
SNAIL2 | 5′-GCCTCCAAAAAGCCAAACTA-3′ | 5′-CACAGTGATGGGGCTGTATG-3′ |
TWIST1 | 5′-GCCGGAGACCTAGATGTCATT-3′ | 5′-CACGCCCTGTTTCTTTGAAT-3′ |
ZEB1 | 5′-GCCAATAAGCAAACGATTCTG-3′ | 5′-TTTGGCTGGATCACTTTCAAG-3′ |
ZEB2 | 5′-AAGCCAGGGACAGATCAGC-3′ | 5′-CCACACTCTGTGCATTTGAACT-3′ |
FOXC2 | 5′-GCCCAGCAGCAAACTTTCC-3′ | 5′-CCGGTGGGAGTTGAACATCT-3′ |
GSC | 5′-AGCAGCTCGAAGCTCTCGAG-3′ | 5′-CACGTCCGGGTACTTGGTCT-3′ |
IL1R2 | 5′-CTACGCACCACAGTCAAGGAAG-3′ | 5′-CGTCTGTGCATCCATATTCCC-3′ |
SPINT | 5′-AGACTACTGCCTCGCATCCAA-3′ | 5′-CAAGCAGCCTCCATAAACGAA-3′ |
KLF8 | 5′-TCAGAAGGTGGCTCAATGCA-3′ | 5′-CCGAACAGAAGCAGTGACCTG-3′ |
TCF3 | 5′-AGCTCCTCCTTTGACCCCAG-3′ | 5′-ACTCAGTGAAGTGGGTGCCC-3′ |
TCF4 | 5′-TGCGATGTTTTCACCTCCTG-3′ | 5′-TGCCAAAGAAGTTGGTCCATT-3′ |
ZO1 | 5′-GGAGAGGTGTTCCGTGTTGT-3′ | 5′-GGCTAGCTGCTCAGCTCTGT-3′ |
WNT7A | 5′-TGTGGCTGCGACAAAGAGAA-3′ | 5′-TCCACAAAGACCTTGGCGA-3′ |
FZD4 | 5′-TTCACACCGCTCATCCAGTA-3′ | 5′-TGCACATTGGCACATAAACA-3′ |
Abbreviations: RT–PCR, real-time–PCR; GAPDH, glyceraldehyde-3-phosphate dehydrogenase.
Western blot analysis
Proteins, obtained from 70% confluent cells, were separated by either 10 or 15% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (Biorad). Proteins were detected by the following primary antibodies: ETV4 monoclonal antibody (Abnova, Atlanta, GA, USA); actin (Sigma-Aldrich, St Louis, MO, USA); vimentin, twist, E-cadherin, N-cadherin and Snail1 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); Zeb1 Zo-1 and Slug (Cell Signaling, Danvers, MA, USA). Horseradish peroxidase-conjugated secondary antibody signals were detected using enhanced chemiluminescence (Pierce, Rockford, IL, USA) and ImageQuant 350 apparatus (GE Healthcare, Pittsburg, PA, USA).
Soft agar assays
Briefly, 1 × 104 and 1 × 105 cells of each cell line were suspended in 4 ml 0.3% Noble agar (BD Biosciences; Bedford, MA, USA) in the appropriate medium (0.5 μg/ml of doxycycline was added for shRNA induction). The 4 ml agar–cell mixture was layered on 4-ml bottom layer of 0.5% agar medium. Weekly, 300 μl of medium (or medium with 0.8 μg/ml doxycycline) has been added to each dish. After 21 days at 37 °C, colonies were stained and counted by microscope. Experiments have been performed three times in triplicate.
Cell cycle analysis
Apoptosis was analyzed using the AnnexinV/PI apoptosis kit (BD Biosciences) on FACScan flow cytometer (BD Bioscience). Cell cycle analysis was performed on synchronized cells (overnight 10 mℳ hydroxyurea) by flow cytometry. At different time points from hydroxyurea removal, cells were washed, fixed with 70% ethanol, centrifuged and suspended in a propidium iodide (50 μg/ml) staining buffer. Cell cycle distribution was analyzed using the ModFit LT software (BD Biosciences).
Migration assay
A wound was created by a yellow tip on cells grown to confluence on 6-well plates; fresh medium (with 0.5 μℳ Mitomycin C to prevent cell proliferation) was added and migration was measured on photographs taken at 0 and 48 h.
Invasion assay
Transwell filters of 8-μm pore size (Corning, Lowell, MA, USA) were coated with 50 μl of 5% matrigel (BD Biosciences); 500 μl of the appropriate medium with 10% fetal bovine serum was loaded in the lower chambers. Single-cell suspensions (1 × 105 PC3/DU145 or 1.5 × 105 RWPE cells/well) in medium without serum (and without supplements for RWPE cells) were loaded in the upper chambers. Filters were incubated 24 h at 37 °C in CO2 incubator and, after removal of cells from the upper surface with a cotton swab, were stained with DIFF-QUICK (Medicult, Firenze, Italy). Invading cells, attached to the lower surface, were counted by microscope.
Mouse xenograft
Athymic nude immunodeficient mice (Harlan, Udine, Italy) were maintained at the CeSAL (University of Florence, Firenze, Italy) and treated according to the European Union guidelines and to protocols approved by the local Animal Ethical Committee. Xenografts were generated by subcutaneous injection of 200 μl of phosphate-buffered saline containing either PC3 (4 × 106) or DU145 (2 × 106) cells. Half of the animals were randomly chosen to receive doxycycline (1 mg/ml in drinking water together with 5% saccarose) to induce shRNA. After 8 weeks tumor weight and volume were measured.
Immunofluorescence
Cells, after overnight growth on sterile coverslips, were fixed with 2% formaldehyde, permeabilized with 0.1% Triton X-100 and blocked in 5% horse serum. Cells were incubated with primary antibodies against E-cadherin and N-cadherin followed by incubation with AlexaFluor488-conjugated goat-anti-rabbit secondary antibodies (Invitrogen) and nuclei counterstained with propidium iodide (Sigma). Immunofluorescence was examined using a Leica SP2-AOBS confocal microscope (Leica Microsystems, Nussloch, Germany).
Statistical analysis
All data are expressed as mean±s.d. Statistical analysis was performed using t-test. Statistical significance was accepted for P<0.05.
Acknowledgments
We are indebted to Lucio Luzzatto for much support, helpful suggestions and fruitful discussions. We thank Paola Chiarugi and Giannino Del Sal for valuable discussions and suggestions. We also thank Tommaso Rondelli for the help in the laboratory, Tommaso Melo for his help with confocal microscopy and Luca Boni for statistical advice. AP is a PhD student at the Department of Biochemistry, University of Florence. This work has been supported by a start-up grant from the Istituto Toscano Tumori.
The authors declare no conflict of interest.
Footnotes
Supplementary Information accompanies the paper on the Oncogenesis website (http://www.nature.com/oncsis).
Supplementary Material
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