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. 1977 Jul;4(7):2293–2306. doi: 10.1093/nar/4.7.2293

Effect of non-histone proteins on thermal transition of chromatin and of DNA.

N Defer, A Kitzis, J Kruh, S Brahms, J Brahms
PMCID: PMC342567  PMID: 909776

Abstract

The effect of chromatin non-histone protein on DNA and chromatin stability is investigated by differential thermal denaturation method. 1) Chromatin (rat liver) yields a multiphasic melting profile. The major part of the melting curve of this chromatin is situated at temperatures higher than pure DNA, with a distinct contribution due to nucleosomes melting. A minor part melts at temperatures lower than DNA which may be assigned to chromatin non-histone protein-DNA complex which destabilized DNA structure. 2) Heparin which extracts histones lowers the melting profile of chromatin and one observes also a contribution with a Tm lower that of pure DNA. In contrast, extraction on non-histone proteins by urea supresses the low Tm peak. 3) Reconstitution of chromatin non-histone protein-DNA complexes confirms the existence of a fraction of chromatin non-histone protein which lowers the melting temperature when compared to pure DNA. It is concluded that chromatin non-histone proteins contain different fractions of proteins which are causing stabilizing and destabilizing effect on DNA structure.

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Selected References

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  1. Ansevin A. T., Hnilica L. S., Spelsberg T. C., Kehm S. L. Structure studies on chromatin and nucleohistones. Thermal denaturation profiles recorded in the presence of urea. Biochemistry. 1971 Dec 7;10(25):4793–4803. doi: 10.1021/bi00801a030. [DOI] [PubMed] [Google Scholar]
  2. Ansevin A. T., Macdonald K. K., Smith C. E., Hnilica L. S. Mechanics of chromatin template activation. Physical evidence for destabilization of nucleoproteins by polyanions. J Biol Chem. 1975 Jan 10;250(1):281–289. [PubMed] [Google Scholar]
  3. Barrett T., Maryanka D., Hamlyn P. H., Gould H. J. Nonhistone proteins control gene expression in reconstituted chromatin. Proc Natl Acad Sci U S A. 1974 Dec;71(12):5057–5061. doi: 10.1073/pnas.71.12.5057. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Bekhor I., Feldman B. Assembly of DNA with histones and nonhistone chromosomal proteins in vitro. Biochemistry. 1976 Nov 2;15(22):4771–4777. doi: 10.1021/bi00667a004. [DOI] [PubMed] [Google Scholar]
  5. Berlowitz L., Kitchin R., Pallotta D. Histones and RNA synthesis: selective binding of histones by a synthetic polyanion in calf thymus nuclei. Biochim Biophys Acta. 1972 Mar 14;262(2):160–168. doi: 10.1016/0005-2787(72)90229-8. [DOI] [PubMed] [Google Scholar]
  6. CHAUVEAU J., MOULE Y., ROUILLER C. Isolation of pure and unaltered liver nuclei morphology and biochemical composition. Exp Cell Res. 1956 Aug;11(2):317–321. doi: 10.1016/0014-4827(56)90107-0. [DOI] [PubMed] [Google Scholar]
  7. Camerini-Otero R. D., Sollner-Webb B., Felsenfeld G. The organization of histones and DNA in chromatin: evidence for an arginine-rich histone kernel. Cell. 1976 Jul;8(3):333–347. doi: 10.1016/0092-8674(76)90145-8. [DOI] [PubMed] [Google Scholar]
  8. Carlson R. D., Olins A. L., Olins D. E. Urea denaturation of chromatin periodic structure. Biochemistry. 1975 Jul 15;14(14):3122–3125. doi: 10.1021/bi00685a013. [DOI] [PubMed] [Google Scholar]
  9. Courtois Y., Dastugue B., Kamiyama M., Kruh J. Binding of chromosomal non histone proteins to DNA and to nucleohistones. Effect of in vitro phosphorylation. FEBS Lett. 1975 Feb 1;50(2):253–256. doi: 10.1016/0014-5793(75)80501-1. [DOI] [PubMed] [Google Scholar]
  10. Gadski R. A., Chae C. B. Mode of reconstitution of chicken erythrocyte and reticulocyte chromatin. Biochemistry. 1976 Aug 24;15(17):3812–3817. doi: 10.1021/bi00662a025. [DOI] [PubMed] [Google Scholar]
  11. Groner Y., Monroy G., Jacquet M., Hurwitz J. Chromatin as a template for RNA synthesis in vitro. Proc Natl Acad Sci U S A. 1975 Jan;72(1):194–199. doi: 10.1073/pnas.72.1.194. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Hayashi K., Oba Y. Selective removal of histones from calf-thymus nucleohistone with sodium dodecylsulfate. Proc Natl Acad Sci U S A. 1974 Jun;71(6):2419–2422. doi: 10.1073/pnas.71.6.2419. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Herrick G., Alberts B. Purification and physical characterization of nucleic acid helix-unwinding proteins from calf thymus. J Biol Chem. 1976 Apr 10;251(7):2124–2132. [PubMed] [Google Scholar]
  14. Ide T., Nakane M., Anzai K., Ando T. Supercoiled DNA folded by non-histone proteins in cultured mammalian cells. Nature. 1975 Dec 4;258(5534):445–447. doi: 10.1038/258445a0. [DOI] [PubMed] [Google Scholar]
  15. Kamiyama M., Dastugue B., Defer N., Kruh J. Liver chromatin non-histone proteins. Partial fractionation and mechanism of action on RNA synthesis. Biochim Biophys Acta. 1972 Sep 14;277(3):576–583. doi: 10.1016/0005-2787(72)90101-3. [DOI] [PubMed] [Google Scholar]
  16. Kamiyama M., Wang T. Y. Activated transcription from rat liver chromatin by non-histone proteins. Biochim Biophys Acta. 1971 Jan 28;228(2):563–576. doi: 10.1016/0005-2787(71)90062-1. [DOI] [PubMed] [Google Scholar]
  17. Kitzis A., Defer N., Dastugue B., Sabatier M. M., Kruh J. Effect of heparin on chromatin. FEBS Lett. 1976 Jul 15;66(2):336–339. doi: 10.1016/0014-5793(76)80534-0. [DOI] [PubMed] [Google Scholar]
  18. Kornberg R. D., Thomas J. O. Chromatin structure; oligomers of the histones. Science. 1974 May 24;184(4139):865–868. doi: 10.1126/science.184.4139.865. [DOI] [PubMed] [Google Scholar]
  19. Li H. J., Bonner J. Interaction of histone half-molecules with deoxyribonucleic acid. Biochemistry. 1971 Apr 13;10(8):1461–1470. doi: 10.1021/bi00784a030. [DOI] [PubMed] [Google Scholar]
  20. Mandel R., Fasman G. D. Chromatin and nucleosome structure. Nucleic Acids Res. 1976 Aug;3(8):1839–1855. doi: 10.1093/nar/3.8.1839. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Noll M. Subunit structure of chromatin. Nature. 1974 Sep 20;251(5472):249–251. doi: 10.1038/251249a0. [DOI] [PubMed] [Google Scholar]
  22. Ohlenbusch H. H., Olivera B. M., Tuan D., Davidson N. Selective dissociation of histones from calf thymus nucleoprotein. J Mol Biol. 1967 Apr 28;25(2):299–315. doi: 10.1016/0022-2836(67)90143-x. [DOI] [PubMed] [Google Scholar]
  23. Olins A. L., Olins D. E. Spheroid chromatin units (v bodies). Science. 1974 Jan 25;183(4122):330–332. doi: 10.1126/science.183.4122.330. [DOI] [PubMed] [Google Scholar]
  24. Olins D. E., Olins A. L., Von Hippel P. H. Model nucleoprotein complexes: studies on the interaction of cationic homopolypeptides with DNA. J Mol Biol. 1967 Mar 14;24(2):157–176. doi: 10.1016/0022-2836(67)90324-5. [DOI] [PubMed] [Google Scholar]
  25. Oudet P., Gross-Bellard M., Chambon P. Electron microscopic and biochemical evidence that chromatin structure is a repeating unit. Cell. 1975 Apr;4(4):281–300. doi: 10.1016/0092-8674(75)90149-x. [DOI] [PubMed] [Google Scholar]
  26. Paul J., Gilmour R. S. Organ-specific restriction of transcription in mammalian chromatin. J Mol Biol. 1968 Jul 14;34(2):305–316. doi: 10.1016/0022-2836(68)90255-6. [DOI] [PubMed] [Google Scholar]
  27. Reeder R. H. Transcription of chromatin by bacterial RNA polymerase. J Mol Biol. 1973 Oct 25;80(2):229–241. doi: 10.1016/0022-2836(73)90169-1. [DOI] [PubMed] [Google Scholar]
  28. Rill R., Van Holde K. E. Properties of nuclease-resistant fragments of calf thymus chromatin. J Biol Chem. 1973 Feb 10;248(3):1080–1083. [PubMed] [Google Scholar]
  29. Shaw B. R., Corden J. L., Sahasrabuddhe C. G., Van Holde K. E. Chromatographic separation of chromatin subunits. Biochem Biophys Res Commun. 1974 Dec 23;61(4):1193–1198. doi: 10.1016/s0006-291x(74)80410-9. [DOI] [PubMed] [Google Scholar]
  30. Shih T. Y., Lake R. S. Studies on the structure of metaphase and interphase chromatin of Chinese hamster cells by circular dichroism and thermal denaturation. Biochemistry. 1972 Dec 5;11(25):4811–4817. doi: 10.1021/bi00775a026. [DOI] [PubMed] [Google Scholar]
  31. Staynov D. Z. Thermal denaturation profiles and the structure of chromatin. Nature. 1976 Dec 9;264(5586):522–525. doi: 10.1038/264522a0. [DOI] [PubMed] [Google Scholar]
  32. Subirana J. A. Studies on the thermal denaturation of nucleohistones. J Mol Biol. 1973 Mar 5;74(3):363–386. doi: 10.1016/0022-2836(73)90378-1. [DOI] [PubMed] [Google Scholar]
  33. Tashiro T., Kurokawa M. A contribution of nonhistone proteins to the conformation of chromatin. Eur J Biochem. 1975 Dec 15;60(2):569–577. doi: 10.1111/j.1432-1033.1975.tb21035.x. [DOI] [PubMed] [Google Scholar]
  34. Teng C. S., Teng C. T., Allfrey V. G. Studies of nuclear acidic proteins. Evidence for their phosphorylation, tissue specificity, selective binding to deoxyribonucleic acid, and stimulation effects on transcription. J Biol Chem. 1971 Jun 10;246(11):3597–3609. [PubMed] [Google Scholar]
  35. Tsai Y. H., Ansevin A. T., Hnilica L. S. Association of tissue-specific histones with deoxyribonucleic acid. Thermal denaturation of native, partially dehistonized, and reconstituted chromatins. Biochemistry. 1975 Mar 25;14(6):1257–1265. doi: 10.1021/bi00677a026. [DOI] [PubMed] [Google Scholar]
  36. Von Hippel P. H., McGhee J. D. DNA-protein interactions. Annu Rev Biochem. 1972;41(10):231–300. doi: 10.1146/annurev.bi.41.070172.001311. [DOI] [PubMed] [Google Scholar]
  37. Wang S., Chiu J. F., Klyszejko-Stefanowicz L., Fujitani H., Hnilica L. S. Tissue-specific chromosomal non-histone protein interactions with DNA. J Biol Chem. 1976 Mar 10;251(5):1471–1475. [PubMed] [Google Scholar]
  38. Weinstein B. I., Li H. Stimulation of chromatin template activity by the physiological macromolecule polyphosphate: a possible mechanism for eukaryotic gene derepression. Arch Biochem Biophys. 1976 Jul;175(1):114–120. doi: 10.1016/0003-9861(76)90489-6. [DOI] [PubMed] [Google Scholar]
  39. Wilhelm F. X., de Murcia G. M., Daune M. P. The premelting of nucleoprotein: role of non-histone proteins. Nucleic Acids Res. 1974 Aug;1(8):1043–1057. doi: 10.1093/nar/1.8.1043. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Yu S. S., Li H. J., Shih T. Y. Interactions between arginine-rich histones and deoxyribonucleic acids. I. Thermal denaturation. Biochemistry. 1976 May 18;15(10):2027–2034. doi: 10.1021/bi00655a001. [DOI] [PubMed] [Google Scholar]
  41. de Pomerai D. I., Chesterton C. J., Butterworth P. H. Preparation of chromatin. Variation in the template properties of chromatin dependent on the method of perparation. Eur J Biochem. 1974 Aug 1;46(3):461–471. doi: 10.1111/j.1432-1033.1974.tb03639.x. [DOI] [PubMed] [Google Scholar]
  42. de Pomerai D. I., Chesterton C. J., Butterworth P. H. The effect of heparin on the structure and template properties of chromatin. FEBS Lett. 1974 Jun 1;42(2):149–153. doi: 10.1016/0014-5793(74)80773-8. [DOI] [PubMed] [Google Scholar]
  43. van den Broek H. W., Noodén L. D., Sevall J. S., Bonner J. Isolation, purification, and fractionation of nonhistone chromosomal proteins. Biochemistry. 1973 Jan 16;12(2):229–236. doi: 10.1021/bi00726a009. [DOI] [PubMed] [Google Scholar]

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