Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1978 Nov;5(11):4007–4024. doi: 10.1093/nar/5.11.4007

Analysis of the 3'-terminal nucleotide sequence of vesicular stomatitis virus N protein mRNA.

D J McGeoch, N T Turnbull
PMCID: PMC342730  PMID: 82934

Abstract

The sequence of 205 nucleotides adjacent to the poly(A) tract at the 3'-terminus of the mRNA encoding the N polypeptide of vesicular stomatitis virus has been determined by copying with reverse transcriptase and using 2', 3'-dideoxynucleoside triphosphates as specific chain terminators. The method appears highly suitable for sequence determination in any purified mRNA. An examination of the sequence did not locate without ambiguity the limit of polypeptide coding RNA. The hexanucleotide AAUAAA, previously found in all poly(A)-containing eukaryote mRNAs, is not present, although the sequence immediately adjacent to the 3'-terminal poly(A) has a high content of A+U.

Full text

PDF
4010

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Baltimore D., Huang A. S., Stampfer M. Ribonucleic acid synthesis of vesicular stomatitis virus, II. An RNA polymerase in the virion. Proc Natl Acad Sci U S A. 1970 Jun;66(2):572–576. doi: 10.1073/pnas.66.2.572. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Banerjee A. K., Moyer S. A., Rhodes D. P. Studies on the in vitro adenylation of RNA by vesicular stomatitis virus. Virology. 1974 Oct;61(2):547–558. doi: 10.1016/0042-6822(74)90289-x. [DOI] [PubMed] [Google Scholar]
  3. Both G. W., Moyer S. A., Banerjee A. K. Translation and identification of the mRNA species synthesized in vitro by the virion-associated RNA polymerase of vesicular stomatitis virus. Proc Natl Acad Sci U S A. 1975 Jan;72(1):274–278. doi: 10.1073/pnas.72.1.274. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Both G. W., Moyer S. A., Banerjee A. K. Translation and identification of the viral mRNA species isolated from subcellular fractions of vesicular stomatitis virus-infected cells. J Virol. 1975 Apr;15(4):1012–1019. doi: 10.1128/jvi.15.4.1012-1019.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Brownlee G. G., Cartwright E. M. Rapid gel sequencing of RNA by primed synthesis with reverse transcriptase. J Mol Biol. 1977 Jul;114(1):93–117. doi: 10.1016/0022-2836(77)90285-6. [DOI] [PubMed] [Google Scholar]
  6. Cheng C. C., Brownlee G. G., Carey N. H., Doel M. T., Gillam S., Smith M. The 3' terminal sequence of chicken ovalbumin messenger RNA and its comparison with other messenger RNA molecules. J Mol Biol. 1976 Nov 15;107(4):527–547. doi: 10.1016/s0022-2836(76)80081-2. [DOI] [PubMed] [Google Scholar]
  7. Emerson S. U., Yu Y. Both NS and L proteins are required for in vitro RNA synthesis by vesicular stomatitis virus. J Virol. 1975 Jun;15(6):1348–1356. doi: 10.1128/jvi.15.6.1348-1356.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Freeman G. J., Rose J. K., Clinton G. M., Huang A. S. RNA synthesis of vesicular stomatitis virus. VII. Complete separation of the mRNA's of vesicular stomatitis virus by duplex formation. J Virol. 1977 Mar;21(3):1094–1104. doi: 10.1128/jvi.21.3.1094-1104.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Laskey R. A., Mills A. D. Enhanced autoradiographic detection of 32P and 125I using intensifying screens and hypersensitized film. FEBS Lett. 1977 Oct 15;82(2):314–316. doi: 10.1016/0014-5793(77)80609-1. [DOI] [PubMed] [Google Scholar]
  10. Marcus S. L., Sarkar N. H. Retroviral "terminal deoxynucleotidyl transferase" activity is reverse transcription. Virology. 1978 Feb;84(2):247–259. doi: 10.1016/0042-6822(78)90245-3. [DOI] [PubMed] [Google Scholar]
  11. Maxam A. M., Gilbert W. A new method for sequencing DNA. Proc Natl Acad Sci U S A. 1977 Feb;74(2):560–564. doi: 10.1073/pnas.74.2.560. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. McGeoch D. J., Crawford L. V., Follett E. A. The DNAs of three parvoviruses. J Gen Virol. 1970 Jan;6(1):33–40. doi: 10.1099/0022-1317-6-1-33. [DOI] [PubMed] [Google Scholar]
  13. Merregaert J., van Emmelo J., Devos R., Porter A., Fellner P., Fiers W. The 3'-Terminal nucleotide sequence of encephalomyocarditis virus RNA. Eur J Biochem. 1978 Jan 2;82(1):55–63. doi: 10.1111/j.1432-1033.1978.tb11996.x. [DOI] [PubMed] [Google Scholar]
  14. Mirzabekov A. D., Griffin B. E. 5 s RNA conformation. Studies of its partial T 1 ribonuclease digestion by gel electrophoresis and two-dimensional thin-layer chromatography. J Mol Biol. 1972 Dec 30;72(3):633–643. doi: 10.1016/0022-2836(72)90181-7. [DOI] [PubMed] [Google Scholar]
  15. Moyer S. A., Grubman M. J., Ehrenfeld E., Banerjee A. K. Studies on the in vivo and in vitro messenger RNA species of vesicular stomatitis virus. Virology. 1975 Oct;67(2):463–473. doi: 10.1016/0042-6822(75)90447-x. [DOI] [PubMed] [Google Scholar]
  16. Obijeski J. F., Marchenko A. T., Bishop D. H., Cann B. W., Murphy F. A. Comparative electrophoretic analysis of the virus proteins of four rhabdoviruses. J Gen Virol. 1974 Jan;22(1):21–33. doi: 10.1099/0022-1317-22-1-21. [DOI] [PubMed] [Google Scholar]
  17. Preston C. M., Szilagyi J. F. Cell-free translation of RNA synthesized in vitro by a transcribing nucleoprotein complex prepared from purified vesicular stomatitis virus. J Virol. 1977 Mar;21(3):1002–1009. doi: 10.1128/jvi.21.3.1002-1009.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Pringle C. R. Genetic characteristics of conditional lethal mutants of vesicular stomatitis virus induced by 5-fluorouracil, 5-azacytidine, and ethyl methane sulfonate. J Virol. 1970 May;5(5):559–567. doi: 10.1128/jvi.5.5.559-567.1970. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Proudfoot N. J., Brownlee G. G. 3' non-coding region sequences in eukaryotic messenger RNA. Nature. 1976 Sep 16;263(5574):211–214. doi: 10.1038/263211a0. [DOI] [PubMed] [Google Scholar]
  20. Proudfoot N. J. Sequence analysis of the 3' non-coding regions of rabbit alpha- and beta-globin messenger RNAs. J Mol Biol. 1976 Nov 15;107(4):491–525. doi: 10.1016/s0022-2836(76)80080-0. [DOI] [PubMed] [Google Scholar]
  21. Rhodes D. P., Abraham G., Colonno R. J., Jelinek W., Banerjee A. K. Characterization of vesicular stomatitis virus mRNA species synthesized in vitro. J Virol. 1977 Mar;21(3):1105–1112. doi: 10.1128/jvi.21.3.1105-1112.1977. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Rhodes D. P., Moyer S. A., Banerjee A. K. In vitro synthesis of methylated messenger RNA by the virion-associated RNA polymerase of vesicular stomatitis virus. Cell. 1974 Dec;3(4):327–333. doi: 10.1016/0092-8674(74)90046-4. [DOI] [PubMed] [Google Scholar]
  23. Rose J. K., Knipe D. Nucleotide sequence complexities, molecular weights, and poly(A) content of the vesicular stomatitis virus mRNA species. J Virol. 1975 Apr;15(4):994–1003. doi: 10.1128/jvi.15.4.994-1003.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Rose J. K. Nucleotide sequences of ribosome recgonition sites in messenger RNAs of vesicular stomatitis virus. Proc Natl Acad Sci U S A. 1977 Sep;74(9):3672–3676. doi: 10.1073/pnas.74.9.3672. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Sanger F., Coulson A. R. The use of thin acrylamide gels for DNA sequencing. FEBS Lett. 1978 Mar 1;87(1):107–110. doi: 10.1016/0014-5793(78)80145-8. [DOI] [PubMed] [Google Scholar]
  26. Szilágyi J. F., Pringle C. R. Virion trascriptase activity differences in host range mutants of vesicular stomatitis virus. J Virol. 1975 Oct;16(4):927–936. doi: 10.1128/jvi.16.4.927-936.1975. [DOI] [PMC free article] [PubMed] [Google Scholar]
  27. Szilágyi J. F., Uryvayev L. Isolation of an infectious ribonucleoprotein from vesicular stomatitis virus containing an active RNA transcriptase. J Virol. 1973 Feb;11(2):279–286. doi: 10.1128/jvi.11.2.279-286.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Villarreal L. P., Breindl M., Holland J. J. Determination of molar ratios of vesicular stomatitis virus induced RNA species in BHK21 cells. Biochemistry. 1976 Apr 20;15(8):1663–1667. doi: 10.1021/bi00653a012. [DOI] [PubMed] [Google Scholar]
  29. Wunner W. H., Pringle C. R. Comparison of structural polypeptides from vesicular stomatitis virus (Indiana and New Jersey serotypes) and Cocal virus. J Gen Virol. 1972 Jul;16(1):1–10. doi: 10.1099/0022-1317-16-1-1. [DOI] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES