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. 1976 Sep;3(9):2353–2366. doi: 10.1093/nar/3.9.2353

A comparative X-ray diffraction and circular dichroism study of DNA compact particles formed in water-salt solutions, containing poly(ethylene glycol).

Y M Evdokimov, T L Pyatigorskaya, O F Polyvtsev, N M Akimenko, V A Kadykov, D Y Tsvankin, Y M Varshavsky
PMCID: PMC343090  PMID: 787935

Abstract

Comparative CD and X-ray diffraction studies of DNA compact particules which were obtained in PEG-containing water-salt solutions, have been carried out. Compact particles, formed from native DNA, produce a psi CD spectrum (characterized by a negative band at lambda-270 nm) and a small-angle X-ray diffraction pattern, which shows two reflections: I at 34-40 A and II at 80-90 A (together with its second-order reflection). Compact particules, formed from DNA molecules with partially disordered secondary structure, do not produce the psi CD spectrum and the reflection I, while the reflection II remains unchanged. It is suggested that the spacing of 34-40 A is associated with a side-by-side packing of DNA fragments in "microcrystallization' regions in compact particules and that such "microcrystallization' accounts for the generation of the psi CD spectrum.

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Selected References

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  1. Bram S., Ris H. On the structure of nucleohistone. J Mol Biol. 1971 Feb 14;55(3):325–336. doi: 10.1016/0022-2836(71)90321-4. [DOI] [PubMed] [Google Scholar]
  2. Burckhardt G., Zimmer Ch, Luck G. Conformation and reactivity of DNA V. pH-dependent conformational changes of DNA in complexes with poly-L-histidine: Transitions from B- to A-form and to a condensed state. FEBS Lett. 1973 Feb 15;30(1):35–39. doi: 10.1016/0014-5793(73)80613-1. [DOI] [PubMed] [Google Scholar]
  3. Crick F. H., Klug A. Kinky helix. Nature. 1975 Jun 12;255(5509):530–533. doi: 10.1038/255530a0. [DOI] [PubMed] [Google Scholar]
  4. Dore E., Frontali C., Gratton E. Physico-chemical description of a condensed form of DNA. Biopolymers. 1972 Feb;11(2):443–459. doi: 10.1002/bip.1972.360110210. [DOI] [PubMed] [Google Scholar]
  5. Evdokimov Y. M., Platonov A. L., Tikhonenko A. S., Varshavsky Y. M. A compact form of double-stranded DNA in solution. FEBS Lett. 1972 Jun 15;23(2):180–184. doi: 10.1016/0014-5793(72)80335-1. [DOI] [PubMed] [Google Scholar]
  6. Giannoni G., Padden F. J., Jr, Keith H. D. Crystallization of DNA from dilute solution. Proc Natl Acad Sci U S A. 1969 Mar;62(3):964–971. doi: 10.1073/pnas.62.3.964. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Haynes M., Garrett R. A., Gratzer W. B. Structure of nucleic acid-poly base complexes. Biochemistry. 1970 Oct 27;9(22):4410–4416. doi: 10.1021/bi00824a600. [DOI] [PubMed] [Google Scholar]
  8. Holzwarth G., Gordon D. G., McGinness J. E., Dorman B. P., Maestre M. F. Mie scattering contributions to the optical density and circular dichroism of T2 bacteriophage. Biochemistry. 1974 Jan 1;13(1):126–132. doi: 10.1021/bi00698a020. [DOI] [PubMed] [Google Scholar]
  9. Jordan C. F., Lerman L. S., Venable J. H. Structure and circular dichroism of DNA in concentrated polymer solutions. Nat New Biol. 1972 Mar 22;236(64):67–70. doi: 10.1038/newbio236067a0. [DOI] [PubMed] [Google Scholar]
  10. KILKSON R., MAESTRE M. F. Structure of T-2 bacteriophage. Nature. 1962 Aug 4;195:494–495. doi: 10.1038/195494a0. [DOI] [PubMed] [Google Scholar]
  11. LOWRY O. H., ROSEBROUGH N. J., FARR A. L., RANDALL R. J. Protein measurement with the Folin phenol reagent. J Biol Chem. 1951 Nov;193(1):265–275. [PubMed] [Google Scholar]
  12. Laemmli U. K. Characterization of DNA condensates induced by poly(ethylene oxide) and polylysine. Proc Natl Acad Sci U S A. 1975 Nov;72(11):4288–4292. doi: 10.1073/pnas.72.11.4288. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Lang D. Regular superstructures of purified DNA in ethanolic solutions. J Mol Biol. 1973 Aug 5;78(2):247–254. doi: 10.1016/0022-2836(73)90113-7. [DOI] [PubMed] [Google Scholar]
  14. Maniatis T., Venable J. H., Jr, Lerman L. S. The structure of psi DNA. J Mol Biol. 1974 Mar 25;84(1):37–64. doi: 10.1016/0022-2836(74)90211-3. [DOI] [PubMed] [Google Scholar]
  15. Olins D. E., Olins A. L. Model nucleohistones: the interaction of F1 and F2al histones with native T7 DNA. J Mol Biol. 1971 May 14;57(3):437–455. doi: 10.1016/0022-2836(71)90102-1. [DOI] [PubMed] [Google Scholar]
  16. Pardon J. F., Worcester D. L., Wooley J. C., Tatchell K., Van Holde K. E., Richards B. M. Low-angle neutron scattering from chromatin subunit particles. Nucleic Acids Res. 1975 Nov;2(11):2163–2176. doi: 10.1093/nar/2.11.2163. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Shih T. Y., Fasman G. D. Circular dichroism studies of histone-deoxyribonucleic acid complexes. A comparison of complexes with histone I (f-1), histone IV (f2al), and their mixtures. Biochemistry. 1972 Feb 1;11(3):398–404. doi: 10.1021/bi00753a016. [DOI] [PubMed] [Google Scholar]

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