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. 1985 Nov;5(11):2943–2950. doi: 10.1128/mcb.5.11.2943

Transcription of mouse rDNA and associated formation of the nucleolus organizer region after gene transfer and amplification in Chinese hamster cells.

V N Dhar, D A Miller, O J Miller
PMCID: PMC369105  PMID: 3018488

Abstract

Mouse rDNA can initiate transcription by using only Chinese hamster cell components, and this is associated with nucleolus organizer activity. To demonstrate this, we transferred a 3.2-kilobase segment of mouse rDNA containing the promoter, the transcription initiation site, and part of the external transcribed spacer to dihydrofolate reductase-deficient Chinese hamster cells by cotransformation with an abbreviated mouse dhfr gene. Stepwise selection for methotrexate resistance produced sublines in which the mouse rDNA was usually coamplified with the donor dhfr DNA and occupied the same site or sites in the hamster genome, as shown by in situ hybridization. Transcription from mouse rDNA was demonstrated in two such lines, and S1 protection mapping indicated faithful initiation of the transcript. In some cells from both lines, the chromosome segments containing amplified mouse rDNA showed multiple silver-staining regions (i.e., active nucleolus organizers). Although the transferred mouse rDNA was able to use the rDNA transcriptional machinery of the Chinese hamster, the level of transcription was much lower than expected from the rDNA copy number, and a large fraction of each amplified region showed no silver staining. Since the absence of silver staining is generally correlated with the absence of transcription, many copies of the amplified mouse rDNA may have been in a chromatin conformation in which they could not be transcribed. This was not associated with the extensive methylation seen in other amplified, inactive rDNA sequences.

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Selected References

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  1. Alt F. W., Kellems R. E., Bertino J. R., Schimke R. T. Selective multiplication of dihydrofolate reductase genes in methotrexate-resistant variants of cultured murine cells. J Biol Chem. 1978 Mar 10;253(5):1357–1370. [PubMed] [Google Scholar]
  2. Angelier N., Hernandez-Verdun D., Bouteille M. Visualization of Ag-NOR proteins on nucleolar transcriptional units in molecular spreads. Chromosoma. 1982;86(5):661–672. doi: 10.1007/BF00285609. [DOI] [PubMed] [Google Scholar]
  3. Arnheim N. Characterization of mouse ribosomal gene fragments purified by molecular cloning. Gene. 1979 Oct;7(2):83–96. doi: 10.1016/0378-1119(79)90025-8. [DOI] [PubMed] [Google Scholar]
  4. Berk A. J., Sharp P. A. Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids. Cell. 1977 Nov;12(3):721–732. doi: 10.1016/0092-8674(77)90272-0. [DOI] [PubMed] [Google Scholar]
  5. Bird A. P., Taggart M. H., Gehring C. A. Methylated and unmethylated ribosomal RNA genes in the mouse. J Mol Biol. 1981 Oct 15;152(1):1–17. doi: 10.1016/0022-2836(81)90092-9. [DOI] [PubMed] [Google Scholar]
  6. Chirgwin J. M., Przybyla A. E., MacDonald R. J., Rutter W. J. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry. 1979 Nov 27;18(24):5294–5299. doi: 10.1021/bi00591a005. [DOI] [PubMed] [Google Scholar]
  7. Croce C. M., Talavera A., Basilico C., Miller O. J. Suppression of production of mouse 28S ribosomal RNA in mouse-human hybrids segregating mouse chromosomes. Proc Natl Acad Sci U S A. 1977 Feb;74(2):694–697. doi: 10.1073/pnas.74.2.694. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Eliceiri G. L. The ribosomal RNA of hamster-mouse hybrid cells. J Cell Biol. 1972 Apr;53(1):177–184. doi: 10.1083/jcb.53.1.177. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Gasser C. S., Simonsen C. C., Schilling J. W., Schimke R. T. Expression of abbreviated mouse dihydrofolate reductase genes in cultured hamster cells. Proc Natl Acad Sci U S A. 1982 Nov;79(21):6522–6526. doi: 10.1073/pnas.79.21.6522. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Glisin V., Crkvenjakov R., Byus C. Ribonucleic acid isolated by cesium chloride centrifugation. Biochemistry. 1974 Jun 4;13(12):2633–2637. doi: 10.1021/bi00709a025. [DOI] [PubMed] [Google Scholar]
  11. Grummt I. Mapping of a mouse ribosomal DNA promoter by in vitro transcription. Nucleic Acids Res. 1981 Nov 25;9(22):6093–6102. doi: 10.1093/nar/9.22.6093. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Grummt I. Nucleotide sequence requirements for specific initiation of transcription by RNA polymerase I. Proc Natl Acad Sci U S A. 1982 Nov;79(22):6908–6911. doi: 10.1073/pnas.79.22.6908. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Grummt I. Specific transcription of mouse ribosomal DNA in a cell-free system that mimics control in vivo. Proc Natl Acad Sci U S A. 1981 Feb;78(2):727–731. doi: 10.1073/pnas.78.2.727. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. Harper M. E., Saunders G. F. Localization of single copy DNA sequences of G-banded human chromosomes by in situ hybridization. Chromosoma. 1981;83(3):431–439. doi: 10.1007/BF00327364. [DOI] [PubMed] [Google Scholar]
  15. Hsu T. C., Spirito S. E., Pardue M. L. Distribution of 18+28S ribosomal genes in mammalian genomes. Chromosoma. 1975 Nov 20;53(1):25–36. doi: 10.1007/BF00329388. [DOI] [PubMed] [Google Scholar]
  16. Hubbell H. R., Rothblum L. I., Hsu T. C. Identification of a silver binding protein associated with the cytological silver staining of actively transcribing nucleolar regions. Cell Biol Int Rep. 1979 Oct;3(7):615–622. doi: 10.1016/0309-1651(79)90060-2. [DOI] [PubMed] [Google Scholar]
  17. Labhart P., Reeder R. H. Enhancer-like properties of the 60/81 bp elements in the ribosomal gene spacer of Xenopus laevis. Cell. 1984 May;37(1):285–289. doi: 10.1016/0092-8674(84)90324-6. [DOI] [PubMed] [Google Scholar]
  18. Learned R. M., Tjian R. In vitro transcription of human ribosomal RNA genes by RNA polymerase I. J Mol Appl Genet. 1982;1(6):575–584. [PubMed] [Google Scholar]
  19. Lischwe M. A., Richards R. L., Busch R. K., Busch H. Localization of phosphoprotein C23 to nucleolar structures and to the nucleolus organizer regions. Exp Cell Res. 1981 Nov;136(1):101–109. doi: 10.1016/0014-4827(81)90041-0. [DOI] [PubMed] [Google Scholar]
  20. Lubit B. W., Schreck R. R., Miller O. J., Erlanger B. F. Human chromosome structure as revealed by an immunoperoxidase staining procedure. Exp Cell Res. 1974 Dec;89(2):426–429. doi: 10.1016/0014-4827(74)90815-5. [DOI] [PubMed] [Google Scholar]
  21. Miesfeld R., Sollner-Webb B., Croce C., Arnheim N. The absence of a human-specific ribosomal DNA transcription factor leads to nucleolar dominance in mouse greater than human hybrid cells. Mol Cell Biol. 1984 Jul;4(7):1306–1312. doi: 10.1128/mcb.4.7.1306. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Miller D. A., Tantravahi R., Dev V. G., Miller O. J. Frequency of satellite association of human chromosomes is correlated with amount of Ag-staining of the nucleolus organizer region. Am J Hum Genet. 1977 Sep;29(5):490–502. [PMC free article] [PubMed] [Google Scholar]
  23. Miller K. G., Sollner-Webb B. Transcription of mouse rRNA genes by RNA polymerase I: in vitro and in vivo initiation and processing sites. Cell. 1981 Nov;27(1 Pt 2):165–174. doi: 10.1016/0092-8674(81)90370-6. [DOI] [PubMed] [Google Scholar]
  24. Miller O. J., Dev V. G., Miller D. A., Tantravahi R., Eliceiri G. L. Transcription and processing of both mouse and Syrian hamster ribosomal RNA genes in individual somatic hybrid cells. Exp Cell Res. 1978 Sep;115(2):457–460. doi: 10.1016/0014-4827(78)90309-9. [DOI] [PubMed] [Google Scholar]
  25. Miller O. J., Miller D. A., Dev V. G., Tantravahi R., Croce C. M. Expression of human and suppression of mouse nucleolus organizer activity in mouse-human somatic cell hybrids. Proc Natl Acad Sci U S A. 1976 Dec;73(12):4531–4535. doi: 10.1073/pnas.73.12.4531. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Miller O. J., Tantravahi R., Miller D. A., Yu L. C., Szabo P., Prensky W. Marked increase in ribosomal RNA gene multiplicity in a rat hepatoma cell line. Chromosoma. 1979 Feb 21;71(2):183–195. doi: 10.1007/BF00292822. [DOI] [PubMed] [Google Scholar]
  27. Mishima Y., Financsek I., Kominami R., Muramatsu M. Fractionation and reconstitution of factors required for accurate transcription of mammalian ribosomal RNA genes: identification of a species-dependent initiation factor. Nucleic Acids Res. 1982 Nov 11;10(21):6659–6670. doi: 10.1093/nar/10.21.6659. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Olson M. O., Rivers Z. M., Thompson B. A., Kao W. Y., Case S. T. Interaction of nucleolar phosphoprotein C23 with cloned segments of rat ribosomal deoxyribonucleic acid. Biochemistry. 1983 Jul 5;22(14):3345–3351. doi: 10.1021/bi00283a007. [DOI] [PubMed] [Google Scholar]
  29. Onishi T., Berglund C., Reeder R. H. On the mechanism of nucleolar dominance in mouse-human somatic cell hybrids. Proc Natl Acad Sci U S A. 1984 Jan;81(2):484–487. doi: 10.1073/pnas.81.2.484. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Perry R. P., Kelley D. E., Schibler U., Huebner K., Croce C. M. Selective suppression of the transcription of ribosomal genes in mouse-human hybrid cells. J Cell Physiol. 1979 Mar;98(3):553–559. doi: 10.1002/jcp.1040980313. [DOI] [PubMed] [Google Scholar]
  31. Reeder R. H., Roan J. G., Dunaway M. Spacer regulation of Xenopus ribosomal gene transcription: competition in oocytes. Cell. 1983 Dec;35(2 Pt 1):449–456. doi: 10.1016/0092-8674(83)90178-2. [DOI] [PubMed] [Google Scholar]
  32. Rigby P. W., Dieckmann M., Rhodes C., Berg P. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol. 1977 Jun 15;113(1):237–251. doi: 10.1016/0022-2836(77)90052-3. [DOI] [PubMed] [Google Scholar]
  33. Smetana K., Ochs R., Lischwe M. A., Gyorkey F., Freireich E., Chudomel V., Busch H. Immunofluorescence studies on proteins B23 and C23 in nucleoli of human lymphocytes. Exp Cell Res. 1984 May;152(1):195–203. doi: 10.1016/0014-4827(84)90244-1. [DOI] [PubMed] [Google Scholar]
  34. Southern E. M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol. 1975 Nov 5;98(3):503–517. doi: 10.1016/s0022-2836(75)80083-0. [DOI] [PubMed] [Google Scholar]
  35. Tantravahi U., Guntaka R. V., Erlanger B. F., Miller O. J. Amplified ribosomal RNA genes in a rat hepatoma cell line are enriched in 5-methylcytosine. Proc Natl Acad Sci U S A. 1981 Jan;78(1):489–493. doi: 10.1073/pnas.78.1.489. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Urano Y., Kominami R., Mishima Y., Muramatsu M. The nucleotide sequence of the putative transcription initiation site of a cloned ribosomal RNA gene of the mouse. Nucleic Acids Res. 1980 Dec 20;8(24):6043–6058. doi: 10.1093/nar/8.24.6043. [DOI] [PMC free article] [PubMed] [Google Scholar]
  37. Urlaub G., Chasin L. A. Isolation of Chinese hamster cell mutants deficient in dihydrofolate reductase activity. Proc Natl Acad Sci U S A. 1980 Jul;77(7):4216–4220. doi: 10.1073/pnas.77.7.4216. [DOI] [PMC free article] [PubMed] [Google Scholar]
  38. Warburton D., Atwood K. C., Henderson A. S. Variation in the number of genes for rRNA among human acrocentric chromosomes: correlation with frequency of satellite association. Cytogenet Cell Genet. 1976;17(4):221–230. doi: 10.1159/000130715. [DOI] [PubMed] [Google Scholar]
  39. Weide L. G., Dev V. G., Rupert C. S. Activity of both mouse and Chinese hamster ribosomal RNA genes in somatic cell hybrids. Exp Cell Res. 1979 Oct 15;123(2):424–429. doi: 10.1016/0014-4827(79)90493-2. [DOI] [PubMed] [Google Scholar]
  40. Wejksnora P. J., Warner J. R. Regulation of ribosomal RNA and proteins in mouse-hamster hybrid cells. J Biol Chem. 1981 Sep 25;256(18):9406–9413. [PubMed] [Google Scholar]
  41. Wigler M., Sweet R., Sim G. K., Wold B., Pellicer A., Lacy E., Maniatis T., Silverstein S., Axel R. Transformation of mammalian cells with genes from procaryotes and eucaryotes. Cell. 1979 Apr;16(4):777–785. doi: 10.1016/0092-8674(79)90093-x. [DOI] [PubMed] [Google Scholar]
  42. Williams M. A., Kleinschmidt J. A., Krohne G., Franke W. W. Argyrophilic nuclear and nucleolar proteins of Xenopus laevis oocytes identified by gel electrophoresis. Exp Cell Res. 1982 Feb;137(2):341–351. doi: 10.1016/0014-4827(82)90035-0. [DOI] [PubMed] [Google Scholar]
  43. Yamamoto O., Takakusa N., Mishima Y., Kominami R., Muramatsu M. Determination of the promoter region of mouse ribosomal RNA gene by an in vitro transcription system. Proc Natl Acad Sci U S A. 1984 Jan;81(2):299–303. doi: 10.1073/pnas.81.2.299. [DOI] [PMC free article] [PubMed] [Google Scholar]

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