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. Author manuscript; available in PMC: 2015 Jan 15.
Published in final edited form as: Transplantation. 2014 Jan 15;97(1):10.1097/TP.0b013e3182a6ee0a. doi: 10.1097/TP.0b013e3182a6ee0a

Elevated CXCL10 (IP-10) in Bronchoalveolar Lavage Fluid is Associated with Acute Cellular Rejection Following Human Lung Transplantation

Shahid Husain 1, Mariangela R Resende 1, Nimerta Rajwans 2, Ricardo Zamel 7, Joseph M Pilewski 3, Maria M Crespo 3, Lianne G Singer 4, Kenneth R McCurry 5, Jay K Kolls 6, Shaf Keshavjee 7, W Conrad Liles 2,8
PMCID: PMC3877157  NIHMSID: NIHMS519162  PMID: 24025324

Abstract

Background

CXCL10 (IP-10) is a potent chemoattractant for T cells that has been postulated to play arole in infection and acute cellular rejection (ACR) in animal models. We measured CXCL10 (IP-10) (and other cytokines previously implicated in the pathogenesis of ACR) in the bronchoalveolar lavage (BAL) of lung transplant recipients (LTRs) to determine the association between CXCL10 (IP-10) and ACR in LTRs.

Methods

In a prospective study of 85 LTRs, expression of cytokines (TNF, IFNγ, IL-6, IL-8, IL-15, IL-16, IL-17, CXCL10 (IP-10) and MCP-1 (CCL2)) in BAL samples (n=233) from patients with episodes of ACR (n=44), infection (Infect) (n=25), concomitant ‘Infect +ACR’ (n=10), and ‘No Infect & No ACR’ (n=154) were analyzed.

Results

The levels of both CXCL10 (IP-10) and IL-16 were significantly increased in histologically proven ACR, as compared to the ‘No Infect & No ACR’ group (CXCL10 [IP-10]: 107.0 vs. 31.9 pg/mL [p=0.001]; IL-16: 472.1 vs. 283.01 [p=0.01]).However, in a linear mixed effects model, significant association was found only between CXCL10 (IP-10)] and ACR. A 1-log increase of CXCL10 (IP-10) was associated with a 40% higher risk of ACR (OR 1.4; 95% CI 1.12-1.84).

Conclusion

Higher values of CXCL10 (IP-10) in BAL fluid are associated with ACR in LTRs suggesting a potential mechanistic role in the pathogenesis of ACR in LTRs. These results suggest that therapeutic strategies to inhibit CXCL10 (IP-10) and or its cognate receptor, CXCR3, warrant investigation to prevent and/or treat ACR in clinical lung transplantation.

Keywords: CXCL10 (IP-10), lung transplantation, acute cellular rejection (ACR), cytokines

Introduction

Lung transplant recipients (LTRs) are at a higher risk of both infection and rejection, as compared to other categories of solid organ transplant recipients (SOTRs) (1). It is important to elucidate the underlying mechanisms of clinical syndromes causing lung allograft dysfunction and failure in this patient population. CXCL10 (IP-10) is a member of the CXC chemokine subgroup of the chemokine superfamily and exerts its biological effects by binding to its cognate receptor, CXCR3. CXCL10 (IP-10) plays a critical role in the regulation of T cell chemotaxis during inflammatory immune responses and has been implicated as an important mediator of acute rejection in organ transplant recipients (2). The role of CXCL10 (IP-10) role in the pathogenesis of organ rejection was initially highlighted in a MHC-mismatched mouse allograft model in which CXCR3-/- mice survived longer than wild type mice (3). Similarly, another study in a rat model of orthotropic lung transplantation and ACR noted increased expression of CXCL10 (IP-10) and CXCR3 associated with recruitment of mononuclear cells in the allograft during ACR (4).

Relatively few studies have specifically evaluated the role played by CXCL10 (IP-10) in human LTRs. One recently published study noted higher serum levels of CXCL10 (IP-10) in LTRs who developed grade 3 primary graft dysfunction (5). Previous studies examining whether CXCL10 (IP-10) levels in the BAL are associated with ACR in LTRs have yielded conflicting results (5, 6).

Results

Clinical Characteristics

Of the 85 patients enrolled in the study, 35 received alemtuzumab induction immunosuppression (Table 1). The median number of samples analyzed per patient was 3. Median number of samples/patient in the alemtuzumab and non-alemtuzumab groups were not significantly different (4 vs. 2; p=0.4). Median time to first sample was 51 days (IQR 22-97). Patients with subclinical rejection (minimal) were followed clinically with augmentation in calcineurin inhibitor therapy.

Table 1.

Basic demographics of LTRs in the study.

Characteristic Alemtuzumab (N=35) Non- Alemtuzumab (N=50) P value
Age (Years): Interquartile range 56.5 (45-62) 61 (52-64) 0.6
Sex 0.36
 Male 69% (24/35) 58% (29/50)
 Female 31% (11/35) 42% (21/50)
Underlying Disease %
 Emphysema 25% (8/35) 35% (16/50) 0.46
 Idiopathic Pulmonary Fibrosis 20% (7/35) 29% (14/50) 0.45
 Cystic Fibrosis 20% (7/35) 8% (4/50) .018
 Interstitial Lung diseases 11% (4/35) 6% (3/50) 0.44
 Antitrypsin deficiency 0% 4% (2/50)
 Obliterative bronchiolitis 3% (1/35) 4% (2/50)
 Others 23% (8/35) 18% (9/50)
Primary mismatch (Donor +/Recipient -) for Cytomegalovirus 14% (4/35) 20% (10/50) 0.38

NS: not statistically significant; p≥.05

In this cohort, 25 episodes were classified as infection-only episodes (Infect) and 44 episodes were classified as ACR-only episodes (ACR). Ten episodes of concomitant infection and ACR (Infect+ACR) were noted, while 154 episodes were categorized as normal (No Infect & No ACR). The details of various infectious syndromes are provided in Table 2. Individuals who received alemtuzumab induction were more likely to develop CMV pneumonitis while patients in the non-alemtuzumab induction group almost exclusively had CMV infection. Episodes of ACR were more common in the alemtuzumab group. The values of CXCXL10 (IP10) and TNF were not significantly different between patients who did and did not receive alemtuzumab induction. The median values of cytokines among various clinical syndromes are reported in Figure 1.

Table 2.

Important clinical events (number of episodes in patients) in the study cohort.

Alemtuzumab Group N=35 Non-Alemtuzumab Group N=50 P value
Infectious syndromes % (n/N)
 Probable invasive aspergillosis 3% (1/35) 4% (2/50) 1.0
 CMV Infection/Disease 9% (3/35) 28% (14/50) 0.07
 Gram negative Pneumonia 14% (5/35) 2% (1/50) 0.07
 Gram positive Pneumonia 11% (4/35) 2% (1/50) 0.15
 Culture negative Tracheobronchitis 11% (4/35) 0% (0/50) -
 Culture negative Pneumonia 2% (1/50) 10% (5/50) 0.3
Histologically proven (ACR)
 Minimal 48% (18/35) 24% (12/50) 0.012
 Mild 31% (11/35) 6% (3/50) 0.03
 Moderate 22% (8/35) 0% (0/50) -
 Severe 6% (2/35) 0% (0/50) -

Figure 1.

Figure 1

Figure 1

Figure 1

Figure 1

Figure 1

Figure 1

BAL fluid concentrations values in LTRs with and without infection and /or ACR. Only IL-16 values were significantly higher in patients with ACR when compared to patients with infection. (1a) TNFα; (1b) IFNγ; (1c) IL-6; (1d) IL-15; (1e) IL-16; and (1f) MCP-1. Horizontal line represents the median, the box encompasses the 25-75 percentile and the error bars encompass the 10th -90th percentile. * Represents Pairwise Wilcoxon Rank Sum Tests (p ≤ 0.01):

BAL Fluid Cytokine Levels in ACR

Among patients with biopsy proven ACR (all grades), CXCL10 (IP-10) and IL-16 were significantly elevated when compared to patients with No Infect & No ACR. The values for CXCL10 (IP-10) were 107.0 pg/mL in the ACR group as compared to 31.98 pg/mL in the No Infect & No ACR group (p=0.0001) (Figure 2), while IL-16 values were 472.1 pg/mL in patients with ACR as compared to 283.09 pg/mL (p=0.01) in patients with No Infect & No ACR Figure 1(e).

Figure 2.

Figure 2

BAL fluid CXCL10 (IP-10) concentration values in LTRs with and without infection and/or ACR. CXCL10 (IP -10) values were significantly higher in BAL fluid from patients with ACR when compared to BAL fluid from patients with infection, or no infection or ACR. Horizontal line represents the median, the box encompasses the 25th to 75th percentile and the error bars encompass the 1090 percentile for CXCL10 (IP-10). ** Represents Pairwise Wilcoxon Rank Sum Tests (p ≤ 0.001):

However, of the 8 cytokines tested, the only significant association using the linear mixed effects model was between CXCL10 (IP-10) and presence of ACR (Table 3). CXCL10 (IP-10) did not exhibit a significant association with infection, nor was there any significant effect due to differences in immunosuppressive protocols between institutes or any additional significant interactions. The association between CXCL10 (IP-10) and ACR was corroborated by the Mann-Whitney test (Table 4). The latter also suggested an association between IL-16 and ACR. However, this effect was confounded by a significant association between IL-16 and institute (Table 3). Therefore, we view CXCL10 (IP-10) as the most promising biomarker of ACR of the cytokines/chemokines examined in this study. Overall, there was a trend towards higher CXCL10 (IP10) values among lung transplant with increasing grades of rejection (minimal to moderate). The CXCL10 (IP10) median values in patients with minimal, mild, moderate or severe rejection were 86 pg/mL (IQR 26-165), 218 pg/mL (IQR 65-636), 409 pg/mL (IQR 86-1302), and 217 pg/mL (IQR 7.81-426), respectively. Among the patients who received alemtuzumab induction, a similar trend towards a higher concentration of CXCL10 (IP10) with increasing severity or grade of rejection was noted. The CXCL10 (IP10) median values in patients with minimal, mild, moderate were 81 pg/mL (IQR 25-234), 295 pg/mL (IQR 104-956), and 409 pg/mL (IQR 86-1302), respectively. The median CXCL10 (IP10) value for severe rejection was 217 pg/mL (IQR 7.81-426) based on only two observations. No episodes of severe rejection were noted in patients without alemtuzumab induction. The CXCL10 (IP-10) ranges are summarized in Table 4 and Figure 2. The CXCLl0 (IP10) values declined after the resolution of ACR episodes. The median CXCL10 (IP10) values during and after ACR episodes were 293 pg/mL (IQR 76-517) and 39 pg/mL (IQR 13-141), respectively. The CXCL10 (IP10) values were statistically significant in linear mixed effect model with a p value = 0.001. A CXCL10 (IP-10) value of ≥306 pg/mL yielded a 90% specificity and 34% sensitivity for the prediction of ACR (Figure 4).

Table 3.

Mixed linear effects model showing effects of various cytokine concentrations in ACR and/or infection.

Fixed Effects TNF IFN-γ IL-6 IL-15 IL-16 IL-17 CXCL10 (IP-10) MCP-1 (CCL2)
ACR (yes; no) 0.32 0.30 0.32 0.53 0.53 0.53 0.0023 0.30
Infection (yes; no) 0.070 0.96 0.36 0.74 0.10 0.93 0.86 0.96
Institute (TGH; UPMC) 0.60 2.3E-18 0.89 0.74 7.5E-08 0.068 0.60 0.89
Interactions
ACR:Infection 0.061 0.33 0.83 1.00 1.00 0.52 0.52 1.00
ACR:Institute 0.84 0.68 0.68 0.84 0.96 0.68 0.84 0.68
Infection:Institute 0.53 0.92 0.64 0.64 0.53 0.64 0.79 1.00
ACR:Infection:institute 0.61 0.75 0.81 0.95 0.95 0.61 0.95 0.95

Table 4.

BAL fluid cytokine median values (interquartile range) in histologically proven ACR.

Cytokine
median pg/mL
No ACR
(N=173)
ACR
(N=62)
min detectable
threshold
FDR
from linear model
FDR
from Mann-Whitney
TNF 0.98 (0.98 - 1.72) 0.98 (0.98 - 2.21) 1.95 0.32 0.47
IFN-γ 3.51 (0.98 - 3.91) 0.98 (0.98 - 3.91) 1.95; 7.81 0.30 0.24
IL-6 1.28 (0.59 - 6.52) 3.05 (0.59 - 28.53) 0.58; 1.17 0.32 0.10
IL-15 2.28 (0.98 - 5.60) 2.20 (0.98 - 3.69) 0.97; 1.95 0.53 0.18
IL-16 251.13 (85.70 - 570.48) 456.99 (194.63 - 995.54) 1.95; 3.9 0.53 0.038
IL-17 0.49 (0.49 - 0.49) 0.49 (0.49 - 0.49) 0.97 0.53 0.038
CXCL10 (IP-10) 33.00 (3.91 - 138.40) 111.23 (46.89 - 384.80) 1.95; 7.81 0.0023 0.000081
MCP-1 (CCL2) 24.34 (1.49 - 198.26) 41.44 (9.05 - 330.33) 0.97; 1.95 0.30 0.28

Figure 4.

Figure 4

Sensitivity and specificity of CXCL10 (IP-10) values for the diagnosis of ACR. A CXCL10 (IP-10) of 306 pg/mL or higher corresponds to 90% specificity and 34% sensitivity.

Discussion

Our data suggest that elevated CXCL10 (IP-10) in BAL fluid is associated with ACR. Clinical studies evaluating BAL fluid levels CXCL10 (IP-10) in ACR in LTRs have been contradictory (6, 7). Although highly specific, CXCL10 (IP-10) has relatively poor sensitivity for ACR (Figure 4). In a multivariate analysis of the cytokines studied, a one log increase in CXCL10 (IP-10) was associated with a 40% increase in the probability of ACR.

In a study involving 54 biopsies of 24 human LTRs, immunohistochemical examination showed that areas characterized by ACR were infiltrated by T-cells expressing CXCR3. T-cells in BAL of LTRs with ACR were CXCR3+ and demonstrated a strong in vitro migratory capacity in response to CXCL10 (IP-10). Furthermore, alveolar macrophages obtained from individuals with ACR expressed and secreted levels of CXCL10 (IP-10) which were capable of inducing chemotaxis of CXCR3+ T-cells (8). This study, however, did not measure levels of CXCL10 (IP-10) in the BAL fluid. Our findings extend those from previous studies by directly demonstrating that CXCL10 (IP-10) is elevated in the BAL supernatant of patients with ACR, suggesting a critical role for CXCL10 (IP-10) in the pathogenesis of ACR in LTRs.

To date, two other studies have measured CXCL10 (IP-10) levels in the BAL fluid from LTRs. Belperio et al. reported higher CXCL10 (IP-10) levels among LTRs with ACR as compared to healthy individuals (6). However, this study failed to include evaluation of LTRs experiencing infections or to provide a multivariate analysis to account for confounding variables. The other previously published study reported that elevated CXCL10 (IP-10) in BAL fluid was associated with poor clinical outcome and development of bronchiolitis obliterans syndrome (BOS), but failed to show any association with ACR in generalized estimating equation (GEE) regression analysis (7). Our study adds to the existing data by addressing the limitations of the previously reported studies as stated earlier. We showed that CXCL10 (IP-10) was associated with ACR in LTRs and not with infection in a multicenter prospective study of 85 well-characterized patients.

In experimental animal models, elevated levels of TNF, IFN-γ, IL-2 and IL-6 have been reported in the BAL fluid of transplanted lungs during ACR episodes (9-11). Human studies, however, have yielded inconsistent results (12-16). Other studies reported IFN-γ mRNA expression by BAL fluid cells from LTRs within the first three months of graft dysfunction (17, 18). It should be noted that previous studies reporting an association of IFN-γ, IL-6 or TNF expression with ACR in LTRs did not measure CXCL10 (IP-10) (14, 19, 20). Failure to detect an association of TNF with ACR in our study may be attributed to the relatively low levels of TNF in BAL fluid which may in turn be related to fewer numbers of macrophages in our BAL fluids, especially in the cohorts of patients who received alemtuzumab induction (21, 22). In addition, the ability to detect mRNA expression in cells may be much more sensitive than assays of cytokine protein in BAL supernatant.

Association between higher values of IL-16 and ACR observed by Mann-Whitney analysis was not substantiated in the mixed linear effects model due to the significant interaction with the institution where lung transplantation was performed. The exact reason for this observation remains unclear to us. However, our study is consistent with a matched controlled study of 28 LTRs, in which the authors failed to find significantly higher values of IL-16 in the BALs preceding or during ACR (23).

There are several limitations of our current study. The absolute cytokine values were dependent on the BAL procedures performed. At both institutions, the practice was generally standardized. However, the volume of BAL fluid returned by the procedure may vary with technique, thereby affecting the absolute cytokine values observed and possibly contributing to some degree of variation in the observed cytokine values. We were able to analyze only 233 available samples that were much lower than the potential 500 samples. The lower numbers of analyzed samples do not reflect selection bias as the investigators were blinded to CXCL10 (IP10) results. However, inter-institutional differences in clinical variables (e.g., CMV pneumonia and acute rejection rates) may have resulted from individual institutional practice styles. We also did not measure the cell count in BAL as a correlate for rejection. Previous reports have found that cell count measurements might not be specific for rejection and may vary with immunosuppressive regimens and time from transplant (24). We also chose to analyze fewer cytokines in our cohort; we would however argue that these cytokines were reported to be associated with acute or chronic rejection in LTRs in previous studies. Indeed, this comment could not be made regarding other cytokines that were not studied. However, CXCL10 (IP-10) is an important cytokine in TH1 responses, which have been implicated in the pathogenesis of ACR. The significant association of CXCL10 (IP-10) in the presence of other established TH1 cytokines (IFN-γ, TNF) involved in the process of ACR supports a crucial role of CXCL10 (IP-10) in the TH1 pathway.

In conclusion, our data suggests that higher values of CXCL10 (IP-10) in BAL are independently associated with ACR in LTRs. Indeed, future studies in a larger cohort are warranted to further validate our findings. Additional studies assessing the chemokine pathway of CXCL10 (IP-10) may delineate the critical mechanistic role played by CXCL10 (IP-10) in the pathogenesis of ACR in lung allografts. Furthermore, our studies suggest CXCL10 (IP-10) and CXCR3 as potential targets for novel drug development to prevent and/or treat ACR in LTRs (and possibly ACR in other SOTRs).

Material and Methods

Study Design and Setting

Patients

LTRs who were ≥ 18 years of age at the University of Pittsburgh Medical Center (UPMC, Pittsburgh, PA, USA) and the Toronto General Hospital/University of Toronto (TGH, Toronto, ON, CA) from July 2007 to January 2010 were enrolled in the study. Patients were followed prospectively for one year after lung transplantation. Patients underwent scheduled bronchoscopy with BAL or at the discretion of their primary physician for investigation of clinical symptoms suggestive or graft dysfunction. Subjects underwent surveillance bronchoscopy with BAL 2 weeks, and 2, 4, 6, 8, 10 and 12 months during the first year following transplantation at the UPMC. Surveillance bronchoscopy was performed at 2 and 6 weeks, then 3, 6, 9, and 12 months following transplantation at the TGH. Eighty-five patients were enrolled in the study, and a total of 233 BAL samples were obtained for analysis, of which 132 were from UPMC and 101 samples were from TGH. The respective Institutional Review Boards of University of Pittsburgh (0212095) and TGH/University Health Network (08-0723-TE) approved the study in advance, and all patients provided written informed consent for their participation in the study.

Immunosuppression Protocol

All LTRs at UPMC (n=35) received induction immunosuppression with alemtuzumab and maintenance triple immunosuppression with tacrolimus, mycophenolate mofetil and prednisone as described previously (25). Patients enrolled at TGH (n=50) did not receive induction immunosuppression and were maintained on a regimen of cyclosporine, prednisone and azathioprine as reported previously (26).

Prophylaxis Regimens

Cytomegalovirus (CMV)

At UPMC, all patients received a minimum of 6 months of CMV prophylaxis with valganciclovir adjusted for renal function. At TGH, CMV-seronegative recipients with CMV-seropositive donors received 6 months of prophylaxis with valganciclovir adjusted for renal function while CMV-seropositive recipients received 3 months of valganciclovir prophylaxis.

Antifungal Prophylaxis

All patients at UPMC received voriconazole 200 mg twice a day for a minimum of 120 days (27), while at TGH, prophylaxis with voriconazole was administered for 3 months only to individuals with a of history of pre-transplant colonization with Aspergillus spp. or in the presence of post-transplant Aspergillus spp. colonization.

All patients received Pneumocystis jirovecii prophylaxis with trimethoprim-sulfamethoxazole (TMP-SMX) single strength daily. Inhaled pentamidine or oral dapsone was used for patients allergic to TMP-SMX. All patients were prospectively followed for one year after transplantation.

Definitions

Infections

Infectious syndromes (CMV, aspergillosis and pneumonia) were defined as per the standardized recommendations of the American Society of Transplantation (AST) and International Society for Heart and Lung Transplantation (ISHLT) (28, 29). The classification of each infection episode was based on bronchoscopy and BAL analysis.

Acute Cellular Rejection (ACR)

All ACR episodes reported were biopsy proven and graded as minimal, mild, moderate or severe based on the histology findings according to the ISHLT guidelines (30). Clinically suspected ACR and antibody-mediated rejection episodes were excluded from the analysis.

Bronchoscopy with BAL

The patients were prepared with 20% benzocaine spray and 1% lidocaine solution applied to the oropharynx. A total of two 50 mL and one 25 mL aliquots of normal saline solution were instilled separately and immediately aspirated into separate traps. Patients with marginal oxygenation may not have received the entire 125 mL BAL. The aspirates were pooled (BAL fluid), and the total volume instilled and recovered was recorded. Of the possible 500 BAL samples in this cohort, 233 samples with adequate volume were available for analysis.

Sample Processing

Approximately 6 mL of the pooled BAL fluid sample was sent to the clinical virology and microbiology laboratories. The remaining pooled BAL fluid sample was separated into two aliquots; one was sent to the clinical microbiology laboratory for cell count and differential and the other was centrifuged at 400 × g for 20 minutes at 4°C. The supernatant was separated from the cell pellet and a 4 mL aliquot of the supernatant was stored at -80°C for future analysis.

BAL Fluid Cytokine Assays

BAL fluid concentrations of tumor necrosis factor (TNF), interferon-γ (IFN-γ), interleukin-6 (IL-6), IL-15, IL-16, IL-17, CXCL10 (IP-10) and CCL2 (MCP-1) were measured in BAL fluid by specific enzyme-linked imunosorbent assay (ELISA) using commercially available, validated matched monoclonal antibody pairs (R&D Systems; Minneapolis, MN, USA) in a blinded fashion. IFN-γ and IL-15 were measured without dilution, IL-6 and CXCL10 (IP-10) were measured at 1:2 dilution, while MCP-1 (CCL2) CXC and IL-16 were measured at 1:4 and 1:8 dilution, respectively. The absorbency was measured in an ELISA reader (Model 450, Bio-Rad) at 450 nm. The respective cytokine concentration was determined by interpolation from standard curves and expressed as pg/mL.

In summary, Maxisorp 96 well plates (VWR, cat# CA-62409-002) were coated with 50 μl/well of capture antibody at the suggested dilution by the manufacturer and incubated at room temperature overnight. Plates were washed 7X with PBS pH 7.2-7.4/0.05% tween-20 and then blotted against paper towels. Plates were blocked with 200 μl/well PBS pH 7.2-7.4/0.1% BSA (Reagent Diluent) for 2 hours at room temperature. Block solution was removed and 50 μl/well of standards diluted in reagent diluents were added to plates along with samples diluted with reagent diluents to appropriate dilutions. Plates were incubated at 4°C overnight. Plates were washed 7x with PBS pH 7.2-7.4/0.05% Tween-20, blotted against paper towel 50 μl/well of detection antibody (at the suggested dilution by the manufacturer), added and then incubated at room temperature for 2 hours. Plates were washed 7X with PBS pH 7.2-7.4/0.05% tween-20 and then blotted against paper towels. Extravidin Alkaline Phosphatase (Sigma, cat# E2636) was diluted to 1/2000 in Reagent Diluents and 50 μl/well was added to plates and incubated for 1 hour at room temperature. Plates were washed 7X with PBS pH 7.2-7.4/0.05% tween-20, 2X with distilled water and then blotted against paper towels. Plates were then incubated with 100 μl/well of PNPP Sigma Fast (Sigma, cat# N2770) prepared as per manufacturer’s instructions away from light. Plates were read at OD 405 at various time points.

Statistics

All statistical analyses were performed in R version 2.14.0. Preliminary analysis suggested insufficient statistical power to resolve multiple grades of ACR or infection type. Therefore, we used a simple binary classification (positive or negative) for both ACR and infection. Data were log transformed prior to analysis. Concentrations too low to detect by ELISA assay (Table 4) were assigned a value of 0 or, for log transformation, one half of the minimum detection threshold.

We used a linear mixed effects model to determine if there were any significant associations between each of the cytokine concentrations and ACR or infection. The model defined infection, ACR, and institution as fixed effects and patient ID as a random effect. Because of skew in the data, association with ACR was corroborated using the non-parametric Mann-Whitney test. To correct for testing of multiple cytokines, we used a Benjamin & Hochberg false discovery rate (FDR) adjustment for all p values and defined FDR ≤ 0.05 as significant.

Figure 3.

Figure 3

BAL fluid CXCL10 (IP-10) concentration values in LTRs during and post-ACR based on linear mixed effect model. CXCL10 (IP -10) values were significantly higher in BAL fluid from patients with ACR when compared to BAL fluid after ACR. Horizontal line represents the median, the box encompasses the 25-75 percentile and the error bars encompass the 10 -90 percentile for CXCL10 (IP-10). *** Represents Pairwise Wilcoxon Rank Sum Tests (p ≤ 0.0001):

Acknowledgments

Funding: Funded by NIH grant R03 AI067412-01A2. (SH) WCL is the recipient of the Canada Research Chair in Infectious Diseases and Inflammation from the Canadian Institutes for Health Research (CIHR)

Principal investigator of NIH grant R03 AI067412-01A2.

Footnotes

Participated in research design, patient recruitment, data analysis, and writing of the manuscript

Participated in patient recruitment, data analysis, contributed analytic tools

Participated in data analysis and contributed analytic tools

Participated in data analysis and writing of the manuscript

Participated in patient recruitment, data analysis, and writing of the manuscript

Participated in patient recruitment

Participated in patient recruitment and data analysis

Participated in research design, patient recruitment.

Participated in research design, data analysis, and writing of the manuscript

Participated in patient recruitment and data analysis

Participated in research design, data analysis, contributed analytic tools and writing of the manuscript

No conflict of interest

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