Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1995 Sep 26;92(20):9171–9175. doi: 10.1073/pnas.92.20.9171

Geographical structuring in the mtDNA of Italians.

G Barbujani 1, G Bertorelle 1, G Capitani 1, R Scozzari 1
PMCID: PMC40946  PMID: 7568095

Abstract

Geographical patterns of mtDNA variation were studied in 12 Italian samples (1072 individuals) by two different spatial autocorrelation methods. Separate analyses of the frequencies of 12 restriction morphs show North-South clines, differences between Sardinia and the mainland populations, and the effects of isolation by distance. A recently developed autocorrelation statistic summarizing molecular similarity at all sites (AIDA; autocorrelation index for DNA analysis) confirms the presence of a clinical pattern; differences between random pairs of haplotypes tend to increase with their geographical distance. The partition of gene diversity, however, reveals that most variability occurs within populations, whereas differences between populations are minor (GST = 0.057). When the data from the 12 samples are pooled, two descriptors of genetic variability (number of polymorphic sites and average sequence difference between pairs of individuals) do not behave as expected under neutrality. The presence of clinal patterns, Tajima's tests, and a simulation experiment agree in suggesting that population sizes increased rapidly in Italy and Sicily but not necessarily so in Sardinia. The distribution of pairwise sequence differences in the Italian peninsula (excluding Sardinia) permits a tentative location of the demographic increase between 8000 and 20,500 years ago. These dates are consistent with archaeological estimates of two distinct expansion processes, occurring, respectively, in the Neolithic and after the last glacial maximum in the Paleolithic. Conversely, there is no genetic evidence that such processes have had a major impact on the Sardinian population.

Full text

PDF
9175

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Anderson S., Bankier A. T., Barrell B. G., de Bruijn M. H., Coulson A. R., Drouin J., Eperon I. C., Nierlich D. P., Roe B. A., Sanger F. Sequence and organization of the human mitochondrial genome. Nature. 1981 Apr 9;290(5806):457–465. doi: 10.1038/290457a0. [DOI] [PubMed] [Google Scholar]
  2. Barbujani G. Autocorrelation of gene frequencies under isolation by distance. Genetics. 1987 Dec;117(4):777–782. doi: 10.1093/genetics/117.4.777. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Barbujani G., Pilastro A., De Domenico S., Renfrew C. Genetic variation in North Africa and Eurasia: neolithic demic diffusion vs. Paleolithic colonisation. Am J Phys Anthropol. 1994 Oct;95(2):137–154. doi: 10.1002/ajpa.1330950203. [DOI] [PubMed] [Google Scholar]
  4. Barbujani G., Sokal R. R. Genetic population structure of Italy. I. Geographic patterns of gene frequencies. Hum Biol. 1991 Jun;63(3):253–272. [PubMed] [Google Scholar]
  5. Bertorelle G., Barbujani G. Analysis of DNA diversity by spatial autocorrelation. Genetics. 1995 Jun;140(2):811–819. doi: 10.1093/genetics/140.2.811. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Bowcock A. M., Kidd J. R., Mountain J. L., Hebert J. M., Carotenuto L., Kidd K. K., Cavalli-Sforza L. L. Drift, admixture, and selection in human evolution: a study with DNA polymorphisms. Proc Natl Acad Sci U S A. 1991 Feb 1;88(3):839–843. doi: 10.1073/pnas.88.3.839. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Brega A., Mura G., Caccio S., Semino O., Brdicka R., Santachiara-Benerecetti A. S. MtDNA polymorphisms in a sample of Czechoslovaks and in two groups of Italians. Gene Geogr. 1994 Apr;8(1):45–54. [PubMed] [Google Scholar]
  8. Brega A., Scozzari R., Maccioni L., Iodice C., Wallace D. C., Bianco I., Cao A., Santachiara Benerecetti A. S. Mitochondrial DNA polymorphisms in Italy. I. Population data from Sardinia and Rome. Ann Hum Genet. 1986 Oct;50(Pt 4):327–338. doi: 10.1111/j.1469-1809.1986.tb01754.x. [DOI] [PubMed] [Google Scholar]
  9. De Benedictis G., Rose G., Cacciò S., Picardi P., Quagliariello C. Mitochondrial DNA polymorphism in Calabria (southern Italy). Gene Geogr. 1989 Apr;3(1):33–40. [PubMed] [Google Scholar]
  10. Excoffier L. Evolution of human mitochondrial DNA: evidence for departure from a pure neutral model of populations at equilibrium. J Mol Evol. 1990 Feb;30(2):125–139. doi: 10.1007/BF02099939. [DOI] [PubMed] [Google Scholar]
  11. Excoffier L., Smouse P. E., Quattro J. M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 1992 Jun;131(2):479–491. doi: 10.1093/genetics/131.2.479. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Harpending H. C. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum Biol. 1994 Aug;66(4):591–600. [PubMed] [Google Scholar]
  13. Johnson M. J., Wallace D. C., Ferris S. D., Rattazzi M. C., Cavalli-Sforza L. L. Radiation of human mitochondria DNA types analyzed by restriction endonuclease cleavage patterns. J Mol Evol. 1983;19(3-4):255–271. doi: 10.1007/BF02099973. [DOI] [PubMed] [Google Scholar]
  14. Lundstrom R., Tavaré S., Ward R. H. Modeling the evolution of the human mitochondrial genome. Math Biosci. 1992 Dec;112(2):319–335. doi: 10.1016/0025-5564(92)90030-z. [DOI] [PubMed] [Google Scholar]
  15. Merriwether D. A., Clark A. G., Ballinger S. W., Schurr T. G., Soodyall H., Jenkins T., Sherry S. T., Wallace D. C. The structure of human mitochondrial DNA variation. J Mol Evol. 1991 Dec;33(6):543–555. doi: 10.1007/BF02102807. [DOI] [PubMed] [Google Scholar]
  16. Nei M., Tajima F. DNA polymorphism detectable by restriction endonucleases. Genetics. 1981 Jan;97(1):145–163. doi: 10.1093/genetics/97.1.145. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Piazza A. Who are the Europeans? Science. 1993 Jun 18;260(5115):1767–1769. doi: 10.1126/science.8511584. [DOI] [PubMed] [Google Scholar]
  18. Rogers A. R., Harpending H. Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol. 1992 May;9(3):552–569. doi: 10.1093/oxfordjournals.molbev.a040727. [DOI] [PubMed] [Google Scholar]
  19. Sartoris S., Varetto O., Migone N., Cappello N., Piazza A., Ferrara G. B., Ceppellini R. Mitochondrial DNA polymorphism in four Sardinian villages. Ann Hum Genet. 1988 Oct;52(Pt 4):327–340. doi: 10.1111/j.1469-1809.1988.tb01112.x. [DOI] [PubMed] [Google Scholar]
  20. Semino O., Torroni A., Scozzari R., Brega A., De Benedictis G., Santachiara Benerecetti A. S. Mitochondrial DNA polymorphisms in Italy. III. Population data from Sicily: a possible quantitation of maternal African ancestry. Ann Hum Genet. 1989 May;53(Pt 2):193–202. doi: 10.1111/j.1469-1809.1989.tb01784.x. [DOI] [PubMed] [Google Scholar]
  21. Sokal R. R., Harding R. M., Oden N. L. Spatial patterns of human gene frequencies in Europe. Am J Phys Anthropol. 1989 Nov;80(3):267–294. doi: 10.1002/ajpa.1330800302. [DOI] [PubMed] [Google Scholar]
  22. Sokal R. R., Oden N. L., Wilson C. Genetic evidence for the spread of agriculture in Europe by demic diffusion. Nature. 1991 May 9;351(6322):143–145. doi: 10.1038/351143a0. [DOI] [PubMed] [Google Scholar]
  23. Tajima F. The effect of change in population size on DNA polymorphism. Genetics. 1989 Nov;123(3):597–601. doi: 10.1093/genetics/123.3.597. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Wakeley J. Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA. J Mol Evol. 1993 Dec;37(6):613–623. doi: 10.1007/BF00182747. [DOI] [PubMed] [Google Scholar]
  25. de Benedictis G., Rose G., Passarino G., Quagliariello C. Restriction fragment length polymorphism of human mitochondrial DNA in a sample population from Apulia (southern Italy). Ann Hum Genet. 1989 Oct;53(Pt 4):311–318. doi: 10.1111/j.1469-1809.1989.tb01800.x. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES