Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1976 Nov;73(11):3793–3797. doi: 10.1073/pnas.73.11.3793

Role of subunit interfaces in the allosteric mechanism of hemoglobin.

C Chothia, S Wodak, J Janin
PMCID: PMC431212  PMID: 1069263

Abstract

We calculate the surface area buried in subunit interfaces of human deoxyhemoglobin and of horse methemoglobin. A larger surface area is buried in deoxy- than in methemoglobin as a result of tertiary and quaternary structure changes. In both molecules the dimer-dimer interface is closepacked. This implies that hydrophobicity stabilizes the deoxystructure, the free energy spent in keeping the subunits in a low-affinity conformation being compensated by hydrophobic free energy due to the smaller surface area accessible to solvent.

Full text

PDF
3793

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Anderson L. Intermediate structure of normal human haemoglobin: methaemoglobin in the deoxy quaternary conformation. J Mol Biol. 1973 Sep 25;79(3):495–506. doi: 10.1016/0022-2836(73)90401-4. [DOI] [PubMed] [Google Scholar]
  2. Anderson L. Structures of deoxy and carbonmonoxy haemoglobin Kansas in the deoxy quaternary conformation. J Mol Biol. 1975 May 5;94(1):33–49. doi: 10.1016/0022-2836(75)90403-9. [DOI] [PubMed] [Google Scholar]
  3. Baldwin J. M. Structure and function of haemoglobin. Prog Biophys Mol Biol. 1975;29(3):225–320. doi: 10.1016/0079-6107(76)90024-9. [DOI] [PubMed] [Google Scholar]
  4. Chothia C. Hydrophobic bonding and accessible surface area in proteins. Nature. 1974 Mar 22;248(446):338–339. doi: 10.1038/248338a0. [DOI] [PubMed] [Google Scholar]
  5. Chothia C., Janin J. Principles of protein-protein recognition. Nature. 1975 Aug 28;256(5520):705–708. doi: 10.1038/256705a0. [DOI] [PubMed] [Google Scholar]
  6. Chothia C. Structural invariants in protein folding. Nature. 1975 Mar 27;254(5498):304–308. doi: 10.1038/254304a0. [DOI] [PubMed] [Google Scholar]
  7. Fermi G. Three-dimensional fourier synthesis of human deoxyhaemoglobin at 2-5 A resolution: refinement of the atomic model. J Mol Biol. 1975 Sep 15;97(2):237–256. doi: 10.1016/s0022-2836(75)80037-4. [DOI] [PubMed] [Google Scholar]
  8. Janin J., Chothia C. Stability and specificity of protein-protein interactions: the case of the trypsin-trypsin inhibitor complexes. J Mol Biol. 1976 Jan 15;100(2):197–211. doi: 10.1016/s0022-2836(76)80148-9. [DOI] [PubMed] [Google Scholar]
  9. Kellett G. L. Dissociation of hemoglobin into subunits. Ligand-linked dissociation at neutral pH. J Mol Biol. 1971 Aug 14;59(3):401–424. doi: 10.1016/0022-2836(71)90307-x. [DOI] [PubMed] [Google Scholar]
  10. Lee B., Richards F. M. The interpretation of protein structures: estimation of static accessibility. J Mol Biol. 1971 Feb 14;55(3):379–400. doi: 10.1016/0022-2836(71)90324-x. [DOI] [PubMed] [Google Scholar]
  11. Levitt M. Energy refinement of hen egg-white lysozyme. J Mol Biol. 1974 Jan 25;82(3):393–420. doi: 10.1016/0022-2836(74)90599-3. [DOI] [PubMed] [Google Scholar]
  12. MONOD J., WYMAN J., CHANGEUX J. P. ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL. J Mol Biol. 1965 May;12:88–118. doi: 10.1016/s0022-2836(65)80285-6. [DOI] [PubMed] [Google Scholar]
  13. Muirhead H., Cox J. M., Mazzarella L., Perutz M. F. Structure and function of haemoglobin. 3. A three-dimensional fourier synthesis of human deoxyhaemoglobin at 5.5 Angstrom resolution. J Mol Biol. 1967 Aug 28;28(1):117–156. doi: 10.1016/s0022-2836(67)80082-2. [DOI] [PubMed] [Google Scholar]
  14. Perutz M. F. Stereochemistry of cooperative effects in haemoglobin. Nature. 1970 Nov 21;228(5273):726–739. doi: 10.1038/228726a0. [DOI] [PubMed] [Google Scholar]
  15. Perutz M. F., TenEyck L. F. Stereochemistry of cooperative effects in hemoglobin. Cold Spring Harb Symp Quant Biol. 1972;36:295–310. doi: 10.1101/sqb.1972.036.01.040. [DOI] [PubMed] [Google Scholar]
  16. Richards F. M. The interpretation of protein structures: total volume, group volume distributions and packing density. J Mol Biol. 1974 Jan 5;82(1):1–14. doi: 10.1016/0022-2836(74)90570-1. [DOI] [PubMed] [Google Scholar]
  17. Shulman R. G., Hopfield J. J., Ogawa S. Allosteric interpretation of haemoglobin properties. Q Rev Biophys. 1975 Jul;8(3):325–420. doi: 10.1017/s0033583500001840. [DOI] [PubMed] [Google Scholar]
  18. Szabo A., Karplus M. Analysis of cooperativity in hemoglobin. Valency hybrids, oxidation, and methemoglobin replacement reactions. Biochemistry. 1975 Mar 11;14(5):931–940. doi: 10.1021/bi00676a009. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES