Abstract
The Teratosphaeriaceae represents a recently established family that includes numerous saprobic, extremophilic, human opportunistic, and plant pathogenic fungi. Partial DNA sequence data of the 28S rRNA and RPB2 genes strongly support a separation of the Mycosphaerellaceae from the Teratosphaeriaceae, and also provide support for the Extremaceae and Neodevriesiaceae, two novel families including many extremophilic fungi that occur on a diversity of substrates. In addition, a multi-locus DNA sequence dataset was generated (ITS, LSU, Btub, Act, RPB2, EF-1α and Cal) to distinguish taxa in Mycosphaerella and Teratosphaeria associated with leaf disease of Eucalyptus, leading to the introduction of 23 novel genera, five species and 48 new combinations. Species are distinguished based on a polyphasic approach, combining morphological, ecological and phylogenetic species concepts, named here as the Consolidated Species Concept (CSC). From the DNA sequence data generated, we show that each one of the five coding genes tested, reliably identify most of the species present in this dataset (except species of Pseudocercospora). The ITS gene serves as a primary barcode locus as it is easily generated and has the most extensive dataset available, while either Btub, EF-1α or RPB2 provide a useful secondary barcode locus.
Keywords: Eucalyptus, multi-locus, phylogeny, species concepts, taxonomy
INTRODUCTION
The current generic and family concepts of the Mycosphaerellaceae and the Teratosphaeriaceae (Capnodiales, Dothideomycetes) can be indirectly attributed to Crous (1998), who used morphological characteristics of cultures and asexual morphs to show that Mycosphaerella was polyphyletic. Crous (1998) suggested that the genus warranted subdivision into natural groups, defined by their asexual morphs. In contrast to these findings, the first phylogenetic trees published for Mycosphaerella (based on ITS nrDNA sequence data), showed it was monophyletic (Crous et al. 1999, 2000, 2001, Stewart et al. 1999, Goodwin et al. 2001). As more sequence data became available (especially of loci such as 28S nrDNA), this view gradually changed and Mycosphaerella is now recognised as polyphyletic (Braun et al. 2003, Schubert et al. 2007, Crous et al. 2007b, 2009b, Batzer et al. 2008, Dugan et al. 2008, Bensch et al. 2012). Although Mycosphaerella s.l. represents a complex (of genera and species) with more than 10 000 species names (Crous et al. 2000, 2001, 2004b, c, 2006, 2007a, 2009c, Crous & Braun 2003), several phylogenetic lineages remain poorly resolved due to limited sampling (Hunter et al. 2006, Crous et al. 2007a, 2009a,2009b,2009c,2009d, Quaedvlieg et al. 2011, 2012). A previous study by Verkley et al. (2004) showed that Mycosphaerella s.str. was limited to species with Ramularia asexual morphs, and that the remaining Mycosphaerella-like species were better placed in other genera.
The genus Teratosphaeria was separated from Mycosphaerella s.l. based on its ascomatal arrangement and periphysate ostioles (Müller & Oehrens 1982). Teratosphaeria was later placed in its own family, based on ascospores that turn brown and verruculose while still in their asci, the presence of pseudoparenchymatal remnants in ascomata, ascospores with mucoid sheaths, distinct asexual morphs and DNA phylogenetic data (Crous et al. 2007a). By 2012, 22 asexual extremophilic and plant pathogenic genera have been linked to the Teratosphaeriaceae, while 38 asexual genera were included in the Mycosphaerellaceae (Hyde et al. 2013). Another 11 genera have subsequently been added to the Mycosphaerellaceae (Crous et al. 2013, Quaedvlieg et al. 2013). Recent phylogenetic studies into extremophilic fungi collected by Friedman (1982) and Selbmann (2005, 2008) have shown that several genera of slow-growing melanised rock-inhabiting (extremophilic) fungi, isolated from harsh climatic conditions (e.g. the South Pole and high mountain peaks) either belong to the Teratosphaeriaceae and/or to a closely associated, unclassified, family referred to as either Teratosphaeriaceae ‘1’ or ‘2’ in Ruibal et al. (2009, 2011) and Egidi et al. (2014).
The original concept of Mycosphaerella has shifted as it became evident that the mycosphaerella-like morphology has evolved multiple times with taxa clustering in disparate families such as the Schizothyriaceae (Batzer et al. 2008), Cladosporiaceae (Schubert et al. 2007, Dugan et al. 2008, Bensch et al. 2010, 2012), Dissoconiaceae, Mycosphaerellaceae and Teratosphaeriaceae (Crous et al. 2009b, Li et al. 2012).
Numerous species are associated with Mycosphaerella leaf disease (MLD) and Teratosphaeria leaf disease (TLD) of Eucalyptus and the closely related genus Corymbia. The genus Eucalyptus (Myrtaceae) is primarily native to Australia and contains more than 700 species. Some species have exceptionally fast growth rates and relatively short rotation periods, making them ideally suited for hardwood timber, firewood, charcoal, essential oils and pulp production (Grattapaglia et al. 2012). For commercial purposes, Eucalyptus spp. have been introduced and cultivated in many other tropical, sub-tropical and temperate countries, where these species often prosper and even dominate a range of habitats, from heathlands to forests (Crous 1998, Turnbull 2000, Wingfield et al. 2001, Boland et al. 2006). Although Eucalyptus spp. exhibit many properties favourable for commercial forestry production, exotic plantations often suffer severe damage caused by the large numbers of native (host-shift) and introduced pathogens that may cause serious and epidemic diseases, often simultaneously on roots, stems or leaves (Park et al. 2000, Old et al. 2003, Slippers et al. 2005, Hunter et al. 2011). A good example of host shifting is the stem canker pathogen Teratosphaeria zuluensis, which most likely jumped from a native tree to introduced clones of E. grandis in South Africa and to E. camaldulensis in Ethiopia, where it is now a major pathogen (Wingfield et al. 1996, Gezahgne et al. 2003, Cortinas et al. 2010). Host jumping by fungal pathogens is relatively common and several other examples can be found among fungal species associated with MLD and TLD of eucalypts (Crous & Groenewald 2005, Burgess et al. 2007, Crous et al. 2007a, Arzanlou et al. 2008, Hunter et al. 2011, Pérez et al. 2013).
In total, more than 146 species in the Mycosphaerellaceae and Teratosphaeriaceae cultivated from leaf spots of eucalypts are included in this study. Species of this complex are assemblages of cryptic taxa that can co-inhabit the same lesions, making reliable species identification difficult (Crous 1998, Barnes et al. 2004, Crous et al. 2004b, c, Groenewald et al. 2005, Cheewangkoon et al. 2008, Stukenbrock et al. 2012). Species identification has been hampered by conserved sexual morphologies throughout the Mycosphaerellaceae and the Teratosphaeriaceae, turning the taxonomic and systematic focus mostly to asexual morphology (Crous et al. 2000, 2006, Verkley et al. 2013). However, similar asexual morphologies have also independently evolved in different taxa, further complicating the taxonomy of these pathogens (Crous et al. 2007a).
The introduction of routine DNA sequencing technology during the last decade has made it possible to mostly identify and classify these phytopathogens, although species boundary ambiguities still exist between phylogenetically closely related taxa. Several previous studies have used molecular sequencing techniques to analyse the diversity of MLD and TLD pathogens on Eucalyptus spp. However, these studies generally included a limited and frequently non-overlapping dataset of species and DNA loci (with ITS being used predominantly for species identification) (for example, Crous et al. 2006, Hunter et al. 2006).
We analyse 329 isolates representing 146 species of MLD- and TLD-associated fungi, using seven loci that have individually or in combination been used in the past to successfully identify species belonging to the Mycosphaerellaceae or Teratosphaeriaceae. These loci include partial sequences of the β-tubulin gene (Btub), the internal transcribed spacer regions and intervening 5.8S rDNA (ITS), actin (Act), translation elongation factor 1-alpha (EF-1α), 28S nrDNA (LSU), calmodulin (Cal) and RNA polymerase II second largest subunit gene (RPB2) (Crous et al. 2004c, Hunter et al. 2006, Quaedvlieg et al. 2011). An additional 172 isolates representing 125 species (mostly extremophiles linked to the Teratosphaeriaceae by Ruibal et al. (2009, 2011) and Egidi et al. (2014) were also investigated based on two loci, LSU and RPB2.
The primary goal of this study is to 1) resolve the main lineages in Teratosphaeriaceae into phylogenetic and morphological units, which can be assigned to single generic names using existing and newly generated LSU and RPB2 sequence data in combination with the LSU/RPB2 data of Teratosphaeriaceae associated extremophilic isolates generated by Ruibal et al. (2009, 2011) and Egidi et al. (2014). Secondary goals of this study are to 2) create a multi-locus DNA sequence dataset in order to rigorously distinguish the selected MLD- and TLD-associated fungal species; and 3) determine which loci provide the most reliable identification based on PCR efficiency and the size of the Kimura-2-parameter barcode gaps. Comparing the obtained results with existing literature, this study 4) describes novel species isolated from MLD and TLD symptoms; and 5) considers species boundaries of phylogenetically closely related taxa.
MATERIALS AND METHODS
Isolates
Isolates used for this study (Table 1) were obtained from the CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands (CBS), or from the working collection of Pedro Crous (CPC), housed at CBS. Fresh collections were made from leaves of diverse hosts by placing material in damp chambers for 1–2 d. Single conidial colonies were grown from sporulating conidiomata on Petri dishes containing 2 % malt extract agar (MEA) as described earlier by Crous et al. (1991). Leaf and stem tissue bearing ascomata were soaked in water for ± 2 h, after which they were placed in the bottom of Petri dish lids, with the top half of the dish containing MEA. Ascospore germination patterns were determined after 24 h, and single ascospore and conidial cultures were established according to Crous (1998). Colonies were sub-cultured onto potato-dextrose agar (PDA), oatmeal agar (OA) (see Crous et al. 2009e), MEA, and pine needle agar (PNA) (Smith et al. 1996), and incubated at 25 °C to promote sporulation.
Table 1.
Collection details and GenBank accession numbers of isolates included in this study.
| Species | Isolate no.1, 2 | Host | Location | Collector | GenBank accession no.3 |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| LSU | Act | Cal | ITS | RPB2 | EF-1α | Btub | |||||
| Acidiella bohemica | CBS 132720 | Highly acidic soil | Czech Republic | M. Hujslová | KF901984 | – | – | – | KF902178 | – | – |
| CBS 132721ET | Highly acidic soil | Czech Republic | M. Hujslová | KF901985 | – | – | – | KF902179 | – | – | |
| Amycosphaerella africana | CBS 110500ET of Mycosphaerella aurantia | Eucalyptus globulus | Australia: Western Australia | A. Maxwell | KF901837 | KF903395 | KF902554 | KF901516 | KF902223 | KF903115 | KF902818 |
| CBS 110843 = CPC 850ET of Mycosphaerella ellipsoidea | Eucalyptus cladocalyx | South Africa | P.W. Crous | KF902049 | KF903407 | KF902557 | KF901702 | KF902226 | KF903118 | KF902821 | |
| CBS 116154 = CPC 794ET of Mycosphaerella africana | Eucalyptus viminalis | South Africa | P.W. Crous | KF902047 | KF903480 | KF902555 | KF901700 | KF902224 | KF903116 | KF902819 | |
| CBS 680.95 = CPC 796ET of Mycosphaerella africana | Eucalyptus viminalis | South Africa | P.W. Crous | KF902048 | KF903589 | KF902556 | KF901701 | KF902225 | KF903117 | KF902820 | |
| Apenidiella strumelloidea | CBS 114484ET | Carex sp. | Russia | S. Ozerskaya | KF937229 | – | – | – | KF937266 | – | – |
| Aulographina pinorum | CBS 655.86 | Pinus montana | Switzerland | E. Müller | KF902102 | – | – | – | KF902180 | – | – |
| Austroafricana associata | CBS 112224 = CPC 3116 | Protea lepidocarpodendron | Australia: New South Wales | P.W. Crous & B. Summerell | KF901827 | – | – | KF901510 | KF902183 | KF903090 | KF902793 |
| CBS 120730 = CPC 13119ET | Corymbia henryii | Australia: New South Wales | A.J. Carnegie | KF901824 | KF903526 | KF902528 | KF901507 | KF902177 | KF903087 | KF902790 | |
| CBS 120731 = CPC 13128 | Corymbia variegata | Australia: New South Wales | A.J. Carnegie | KF901828 | KF903527 | KF902531 | KF901511 | KF902184 | KF903091 | – | |
| CBS 120732 = CPC 13108 | Eucalyptus dunnii | Australia: New South Wales | A.J. Carnegie | KF901829 | – | KF902532 | KF901512 | KF902185 | KF903092 | KF902794 | |
| CPC 13113 | Eucalyptus dunnii | Australia: New South Wales | A.J. Carnegie | KF901825 | – | KF902529 | KF901508 | KF902181 | KF903088 | KF902791 | |
| CPC 13375 | Eucalyptus tereticornis | Australia: New South Wales | B. Summerell | KF901826 | – | KF902530 | KF901509 | KF902182 | KF903089 | KF902792 | |
| A. keanei | CBS 130524ET | Eucalyptus globulus × camaldulensis | Australia: Queensland | A.J. Carnegie | KF901830 | – | – | – | KF902187 | – | – |
| A. parva | CBS 110503 = CMW 14459 | Eucalyptus globulus | Australia: Western Australia | A. Maxwell | KF901831 | KF903398 | KF902534 | KF901513 | KF902189 | KF903094 | KF902797 |
| CBS 114761 = CPC 1217 | Protea repens | South Africa | P.W. Crous | KF902087 | – | KF902536 | KF901740 | KF902191 | KF903096 | KF902799 | |
| CBS 116289 = CPC 10935 | Eucalyptus sp. | South Africa | P.W. Crous | KF902025 | KF903481 | KF902535 | KF901680 | KF902190 | KF903095 | KF902798 | |
| CBS 119901 = CMW 10189 | Eucalyptus globulus | Ethiopia | A. Gezahgne | KF901986 | KF903512 | KF902537 | KF901647 | KF902192 | KF903097 | KF902800 | |
| CBS 122892 = CPC 12421EET | Eucalyptus globulus | Australia: Victoria | I. Smith | KF901832 | KF903539 | KF902538 | KF901514 | KF902193 | KF903098 | KF902801 | |
| CBS 122893 = CPC 14898 | Protea repens | South Africa | L. Mostert | KF902088 | – | KF902539 | KF901741 | KF902194 | KF903099 | KF902802 | |
| CPC 12249 | Eucalyptus globulus | Portugal | A.J.L. Phillips | KF902104 | KF903612 | KF902533 | KF901750 | KF902188 | KF903093 | KF902796 | |
| Austroafricana sp. | CBS 113059 = CPC 4313 | Eucalyptus sp. | Chile | P.W. Crous | KF901813 | KF903460 | KF902527 | KF901498 | KF902186 | KF903086 | KF902795 |
| Batcheloromyces alistairii | CBS 120035 = CPC 12730ET | Protea repens | South Africa | P.W. Crous & A. Smith | KF937220 | – | – | – | KF937252 | – | – |
| B. leucadendri | CBS 111577 = CPC 1838EET | Leucadendron laureolum | South Africa | L. Swart | KF937221 | – | – | – | KF937253 | – | – |
| B. proteae | CBS 110696 = CPC 1518 = CPC 18701 | Protea cynaroides | South Africa | L. Swart | KF901833 | – | – | – | KF902195 | – | – |
| B. sedgefieldii | CBS 112119 = CPC 3026ET | Protea repens | South Africa | J.E. Taylor | KF937222 | – | – | – | KF937254 | – | – |
| Camarosporula persooniae | CBS 112494 = CPC 3350 | Persoonia sp. | Australia | P.W. Crous & B.A. Summerell | JF770460 | – | – | – | KF937255 | – | – |
| Capnodium coffeae | CBS 147.52 | Coffea robusta | Zaire | – | KF902173 | – | – | – | KF902196 | – | – |
| Catenulostroma hermanusense | CBS 128768 = CPC 18276ET | Phaenocoma prolifera | South Africa | K.L. Crous & P.W. Crous | KF902089 | – | – | – | KF902197 | – | – |
| Cat. protearum | CBS 125421 = CPC 15370EET | Leucadendron tinctum | South Africa | F. Roets | KF902090 | – | – | – | KF902198 | – | – |
| Cercospora ariminensis | CBS 137.56 | Hedysarum coronarium | Italy | M. Ribaldi | KF902004 | – | – | – | KF902199 | – | – |
| C. beticola | CBS 124.31 = CPC 5070 | Beta vulgaris | Romania | E.W. Schmidt | KF902046 | – | – | – | KF902200 | – | – |
| C. capsici | CBS 118712 | – | Fiji | P. Tyler | KF251800 | – | – | – | KF252302 | – | – |
| C. zebrina | CBS 118790 | Trifolium subterraneum | Australia | M.J. Barbetti | KF251651 | – | – | – | KF252305 | – | – |
| Cladosporium allicinum | CBS 118854 | soil of Perilla field | South Korea | S.B. Hong | KJ564335 | – | – | – | – | – | – |
| Cla. chalastosporoides | CBS 125985 = CPC 13864ET | Protea arborea | South Africa | P.W. Crous | KJ564332 | – | – | – | – | – | – |
| Cla. fusiforme | CBS 119414ET | hypersaline water of Secovlje salterns | Slovenia | L. Butinar | KJ564333 | – | – | – | – | – | – |
| Cla. herbarum | CBS 121621 = CPC 12177ET | Hordeum vulgare | The Netherlands | P.W. Crous | KJ564331 | – | – | – | – | – | – |
| Cla. hillianum | CBS 125988 = CPC 15458ET | Typha orientalis | New Zealand | R. Beever | KJ564334 | – | – | – | – | – | – |
| Cla. iridis | CBS 138.40 = CPC 15458ET | Iris sp. | The Netherlands | Boterenbrood | EU167591 | – | – | – | – | – | – |
| Constantinomyces macerans | TRN440 | Rock sample | Spain | – | KF310005 | – | – | – | KF310081 | – | – |
| Con. nebulosus | CBS 117941 = TRN262 | Rock sample | Spain | – | KF310014 | – | – | – | KF310068 | – | – |
| Cystocoleus ebeneus | L348 | Rock sample | Austria | Hafellner & Muggia | EU048580 | – | – | – | – | – | – |
| Devriesia acadiensis | CBS 115874 = DAOM 232211 | Heat-treated soil | Canada | N. Nickerson | EU040226 | – | – | – | KF937251 | – | – |
| D. agapanthi | CBS 132689 = CPC 19833ET | Agapanthus africanus | South Africa | P.W. Crous | JX069859 | – | – | – | KJ564346 | – | – |
| D. americana | CBS 117726ET | Air sample | USA | F.M. Dugan | EU040227 | – | – | – | – | – | – |
| D. bulbillosae | CBS 118285 = TRN81 | Rock sample | Spain: Mallorca | C. Ruibal | KF310029 | – | – | – | KF310102 | – | – |
| D. capensis | CBS 130602 = CPC 18299ET | Protea sp. | South Africa | P.W. Crous | JN712569 | – | – | JN712501 | – | – | – |
| CPC 13981 | Protea repens | Portugal | M.F. Moura | JN712568 | – | – | EU707887 | – | – | – | |
| D. compacta | CBS 118294 = TRN111ET | Rock sample | Spain | C. Ruibal | GU323967 | – | – | – | KF310095 | – | – |
| D. knoxdaviesii | CBS 122898 = CPC 14960ET | Protea sp. | South Africa | P.W. & M. Crous | EU707865 | – | – | EU707865 | – | – | – |
| CPC 14905 | Protea sp. | South Africa | P.W. & M. Crous | KJ564328 | – | – | EU707866 | – | – | – | |
| D. lagerstroemiae | CBS 125422 = CPC 14403ET | Lagerstroemia indica | USA: Louisiana | P.W. Crous & M.J. Wingfield | KF902149 | – | – | – | KF902233 | – | – |
| D. modesta | CBS 137182 = CCFEE 5672ET | Rock sample | Italy | – | KF310026 | – | – | – | KF310093 | – | – |
| D. queenslandica | CBS 129527 = CPC 17306ET | Scaevola taccada | Australia: Queensland | P.W. Crous, R.G. Shivas & A.R. McTaggart | KF901839 | – | – | – | KF902234 | – | – |
| D. shakazului | CBS 133579 = CPC 19784ET | Aloe sp. | South Africa | P.W. Crous | KC005797 | – | – | – | KJ564347 | – | – |
| D. shelburniensis | CBS 115876 = DAOM 232217 | Heat-treated soil | Canada | N. Nickerson | EU040228 | – | – | – | KF937256 | – | – |
| D. simplex | CBS 137183 = CCFEE 5681ET | Rock sample | Italy | – | KF310027 | – | – | – | KF310104 | – | – |
| Devriesia sp. | CPC 11876 | Avicermia sp. | South Africa | W. Gams | GQ852622 | – | – | – | KJ564341 | – | – |
| D. staurophora | CBS 375.81 = ATCC 200934 = CPC 3687 | Soil sample | Colombia | H. Valencia | KF901963 | – | – | – | KF902201 | – | – |
| CBS 117873 = CPC 11198 | Amelanchier lamarckii | The Netherlands | G. Verkley | KF937223 | – | – | – | KF937257 | – | – | |
| D. stirlingiae | CBS 133581 = CPC 19948ET | Stirlingia latifolia | Australia | W. Gams | KC005799 | – | – | – | – | – | – |
| D. strelitziae | CBS 122379 = X1037ET | Strelitzia nicolai | South Africa | W. Gams & H. Glen | GU301810 | – | – | EU436763 | GU371738 | GU349049 | – |
| D. strelitziicola | CBS 122480ET | Strelitzia sp. | South Africa | W. Gams & H. Glen | GU214417 | – | – | – | – | – | – |
| D. thermodurans | CBS 115878 = DAOM 225330ET | Heat-treated soil | Canada | N. Nickerson | EU040229 | – | – | – | KF937258 | – | – |
| CBS 115879 = DAOM 226677 | Heat-treated soil | Canada | N. Nickerson | KF937224 | – | – | – | KF937259 | – | – | |
| Dothistroma pini | CBS 116483 | Pinus nigra | USA | G. Adams | JX901825 | – | – | – | JX901949 | – | – |
| Doth. septosporum | CBS 383.74 | Pinus coulteri | France | M. Morelet | KF251807 | – | – | – | KF252308 | – | – |
| Elasticomyces elasticus | CBS 122538 = CCFEE 5313ET | Lichen thallus (Usnea antarctica) | Antarctica | L. Zucconi | KJ380894 | – | – | FJ415474 | – | – | – |
| CCFEE 5474 | Rock sample | Antarctica | – | KF309991 | – | – | – | KF310046 | – | – | |
| CCFEE 5490 | Rock sample | Antarctica | – | KF309992 | – | – | – | KF310047 | – | – | |
| CCFEE 5505 | Rock sample | Argentina | – | KF309996 | – | – | – | – | – | – | |
| CCFEE 5506 | Rock sample | Argentina | – | KF309997 | – | – | – | KF310048 | – | – | |
| CCFEE 5525 | Rock sample | Antarctica | – | KF309998 | – | – | – | KF310049 | – | – | |
| CCFEE 5526 | Rock sample | Antarctica | – | KF309999 | – | – | – | KF310050 | – | – | |
| CCFEE 5543 | Rock sample | India | – | KF309993 | – | – | – | KF310051 | – | – | |
| CCFEE 5547 | Rock sample | Antarctica | – | KF310012 | – | – | – | KF310052 | – | – | |
| Eupenidiella venezuelensis | CBS 106.75ET | Man, Tinea nigra | Venezuela | D. Borelli | KF902163 | KF903393 | KF902540 | KF901802 | KF902202 | KF903100 | KF902803 |
| Euteratosphaeria verrucosiafricana | CBS 118496 = CPC 11167ET | Eucalyptus sp. | Indonesia | M.J. Wingfield | – | – | – | DQ303056 | – | – | – |
| CBS 118497 = CPC 11169 | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901992 | KF903496 | KF902541 | KF901653 | KF902204 | KF903102 | KF902804 | |
| CBS 118498 = CPC 11170 | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901993 | KF903497 | KF902542 | KF901654 | KF902205 | KF903103 | KF902805 | |
| Extremus adstrictus | CBS 118292 = TRN96ET | Rock sample | Spain | C. Ruibal | KF310022 | – | – | – | KF310103 | – | – |
| Ex. antarcticus | CCFEE 5312 | Rock sample | Antarctica | – | KF310020 | – | – | – | KF310086 | – | – |
| CBS 136103 = CCFEE 451ET | Rock sample | Antarctica | – | GU250360 | – | – | – | KF310085 | – | – | |
| CBS 136104 = CCFEE 5207 | Rock sample | Antarctica | – | KF310021 | – | – | – | KF310087 | – | – | |
| Extremus sp. | CCFEE 5551 | – | – | – | KC315879 | – | – | – | – | – | – |
| Extremus sp. | CBS 118300 = TRN137 | Rock sample | Spain | C. Ruibal | GU323973 | – | – | – | KF310098 | – | – |
| Extremus sp. | CBS 119436 = CCFEE 5177 | Rock sample | Antarctica | S. Onofri | KJ564326 | – | – | – | – | – | – |
| Friedmanniomyces endolithicus | CCFEE 5199 | Rock sample | Antarctica | – | KF310007 | – | – | – | KF310093 | – | – |
| CCFEE 5283 | Rock sample | Antarctica | – | KF310006 | – | – | – | KF310053 | – | – | |
| CCFEE 5328 | Rock sample | Antarctica | – | JN885563 | – | – | – | KF310055 | – | – | |
| Hortaea thailandica | CBS 125423 = CPC 16651ET | Syzygium siamense | Thailand | P.W. Crous & K.D. Hyde | KF902125 | – | – | – | KF902206 | – | – |
| Lapidomyces hispanicus | CBS 118764 = TRN126 | Rock sample | Spain | – | KF310016 | – | – | – | KF310076 | – | – |
| Lecanosticta brevispora | CBS 133601 = CPC 18092ET | Pinus sp. | Mexico | M. de Jesús Yáñez-Morales | KF902021 | – | – | – | KF902207 | – | – |
| CPC 18092 | Pinus sp. | Mexico | M. de Jesús Yáñez-Morales | JX901855 | – | – | – | JX901979 | – | – | |
| L. longispora | CBS 133602 = CPC 17940EET | Pinus sp. | Mexico | M. de Jesús Yáñez-Morales & C. Méndez-Inocencio | KF902022 | – | – | – | KF902208 | – | – |
| CPC 17940 | Pinus sp. | Mexico | M. de Jesús Yáñez-Morales & C. Méndez-Inocencio | JX901857 | – | – | – | JX901981 | – | – | |
| CPC 17941 | Pinus sp. | Mexico | M. de Jesús Yáñez-Morales & C. Méndez-Inocencio | JX901858 | – | – | – | JX901982 | – | – | |
| Melanodothis caricis | CBS 860.72ET | – | – | – | GU214431 | – | – | – | – | – | – |
| Meristemomyces frigidum | CCFEE 5457 | Rock sample | Italy | – | GU250389 | – | – | – | KF310063 | – | – |
| CCFEE 5507 | Rock sample | Argentina | – | KF310013 | – | – | – | KF310066 | – | – | |
| CCFEE 5508 | Rock sample | Argentina | – | GU250401 | – | – | – | KF310067 | – | – | |
| Microxyphium citri | CBS 451.66 | Citrus sinensis | Spain | H.A. van der Aa | KF902094 | – | – | – | KF902209 | – | – |
| Monticola elongata | CCFEE 5394 | Rock sample | Italy | – | KF309995 | – | – | – | KF310062 | – | – |
| CCFEE 5492 | Rock sample | Italy | – | KF309994 | – | – | – | – | – | – | |
| CCFEE 5499 | Rock sample | Italy | – | GU250398 | – | – | – | KF310065 | – | – | |
| Mucomycosphaerella eurypotamii | JK 5586J | Juncus roemerianus | USA: North Carolina | B. & J. Kohlmeyer | GU301852 | – | – | – | GU371722 | – | – |
| Mycosphaerella irregulari | CBS 123242 = CPC 15408 = TH003ET | Eucalyptus globulus | Thailand | R. Cheewangkoon | KF902126 | KF903542 | KF902543 | KF901769 | KF902213 | KF903107 | KF902809 |
| My. laricis-leptolepidis | MAFF 410632 | Larix leptolepis | Japan | T. Yokota | JX901863 | – | – | – | JX901987 | – | – |
| MAFF 410081 | Larix leptolepis | Japan | K. Ito | JX901862 | – | – | – | JX901986 | – | – | |
| My. madeirae | CBS 112301 = CPC 3747ET | Eucalyptus globulus | Portugal: Madeira | S. Denman | KF902033 | KF903453 | KF902544 | KF901688 | – | KF903108 | – |
| CBS 112895 = CPC 3745 = CMW 14458ET | Eucalyptus globulus | Portugal: Madeira | S. Denman | KF902017 | – | KF902545 | KF901675 | KF902214 | KF903109 | – | |
| My. nootherensis | CBS 130522ET | Corymbia intermedia | Australia | A.J. Carnegie | KF901835 | – | – | – | KF902216 | – | – |
| My. pseudomarksii | CBS 123241 = CPC 15410 = TH126ET | Eucalyptus sp. | Thailand | R. Cheewangkoon | KF902127 | KF903541 | KF902547 | KF901770 | KF902217 | KF903111 | KF902811 |
| My. pseudovespa | CBS 121159 = DAR 77432ET | Eucalyptus biturbinata | Australia | A.J. Carnegie | KF901836 | KF903535 | KF902548 | – | KF902218 | KF903112 | KF902812 |
| My. quasiparkii | CBS 123243 = CPC 15409ET | Eucalyptus sp. | Thailand | P. Suwannawong | KF902128 | KF903543 | KF902549 | KF901771 | KF902219 | KF903113 | KF902813 |
| My. sumatrensis | CBS 118499 = CPC 11171ET | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901994 | KF903498 | KF902550 | KF901655 | KF902220 | – | KF902814 |
| CBS 118501= CPC 11175 | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901995 | KF903499 | KF902551 | KF901656 | KF902221 | – | KF902815 | |
| CBS 118502= CPC 11178 | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901996 | KF903500 | KF902552 | KF901657 | KF902222 | – | KF902816 | |
| My. vietnamensis | CBS 119974 = CMW 23441 = MUCC 66ET | Eucalyptus grandis hybrid | Vietnam | T.I. Burgess | KF902171 | KF903514 | KF902553 | KF901809 | – | KF903114 | KF902817 |
| Myrtapenidiella corymbia | CBS 124769 = CPC 14640ET | Corymbia foelscheana | Australia: Northern Territory | B.A. Summerell | KF901838 | KF903558 | KF902558 | KF901517 | KF902227 | KF903119 | KF902822 |
| CPC 14641 | Corymbia foelscheana | Australia: Northern Territory | B.A. Summerell | KF937225 | – | – | – | KF937261 | – | – | |
| Myr. eucalypti | CBS 123245 = CPC 15449 | Eucalyptus camaldulensis | Thailand | R. Cheewangkoon | KF902129 | – | – | – | KF902228 | – | – |
| CBS 123246 = CPC 15411ET | Eucalyptus camaldulensis | Thailand | P. Suwannawong | KF902130 | KF903545 | KF902559 | KF901772 | KF902229 | KF903120 | KF902823 | |
| Myr. tenuiramis | CBS 124993 = CPC 13692ET | Eucalyptus tenuiramis | Australia: Tasmania | B.A. & P. Summerell | GQ852626 | – | – | – | KF937262 | – | – |
| CPC 13692 | Eucalyptus tenuiramis | Australia: Tasmania | B.A. & P. Summerell | KF901997 | KF903658 | KF902560 | KF901658 | KF902230 | KF903121 | KF902824 | |
| Neocatenulostroma abietis | CBS 110038 | Painted outdoor wall | Sweden | N. Hallenberg | KF937226 | – | – | – | KF937263 | – | – |
| Neoc. germanicum | CBS 539.88ET | Rock sample | Germany | J. Kuroczkin | KF901989 | – | – | – | KF902231 | – | – |
| Neoc. microsporum | CBS 101951 = CPC 1960ET of sexual morph | Protea cynaroides | South Africa | J.E. Taylor & S. Denman | KF901814 | – | KF902561 | KF901499 | KF902232 | KF903122 | KF902825 |
| CBS 110890 = CPC 1832ET of asexual morph | Protea cynaroides | South Africa | J.E. Taylor & S. Denman | EU019255 | JX500130 | – | AY260097 | – | – | – | |
| CBS 111031 = CPC 1848 | Protea cynaroides | South Africa | J.E. Taylor & S. Denman | KF937227 | – | – | – | KF937264 | – | – | |
| Neodevriesia hilliana | CBS 123187 = CPC 15382ET | Macrozamia communis | New Zealand | C.F. Hill | GU214414 | – | – | – | – | – | – |
| Neodevriesia xanthorrhoeae | CBS 128219 = CPC 17720ET | Xanthorrhoea australis | Australia | P.W. Crous, I. Pascoe & J. Edwards | HQ599606 | – | – | – | – | – | – |
| Neodevriesia sp. | CBS 118302 = TRN142 | Rock sample | Spain: Mallorca | C. Ruibal | GU323975 | – | – | – | KF310100 | – | – |
| Neodevriesiaceae sp. | CPC 19594 | mycoparasite of Myriangium sp. | Brazil | H.C. Evans | KJ564327 | – | – | – | KJ564349 | – | – |
| Neohortaea acidophila | CBS 113389ET | Lignite rock | Germany | U. Hölker | GU323202 | – | – | GU214636 | GU357768 | – | – |
| Neopenidiella nectandrae | CBS 734.87ET | Nectandra coriacea | Cuba | R.F. Castañeda & G. Arnold | KF901982 | – | – | – | KF902235 | – | – |
| Neophaeothecoidea proteae | CBS 114129 = CPC 2831ET | Protea repens | South Africa | S. Denman | KF937228 | – | – | – | KF937265 | – | – |
| Neotrimmatostroma excentricum | CBS 121102 = CPC 13092ET | Eucalyptus agglomerata | Australia: New South Wales | G. Price | KF901840 | KF903534 | KF902562 | KF901518 | KF902236 | KF903123 | KF902826 |
| Oleoguttula mirabilis | CCFEE 5522 | Rock sample | Antarctica | – | KF310019 | – | – | – | KF310070 | – | – |
| Pallidocercospora acaciigena | CBS 112515 = CPC 3837ET | Acacia mangium | Venezuela | M.J. Wingfield | KF902166 | KF903455 | KF902564 | KF901805 | KF902238 | KF903125 | KF902828 |
| CBS 112516 = CPC 3838ET | Acacia mangium | Venezuela | M.J. Wingfield | KF902105 | KF903456 | KF902563 | KF901751 | KF902237 | KF903124 | KF902827 | |
| CBS 115432 = CPC 3836ET | Acacia mangium | Venezuela | M.J. Wingfield | KF902165 | – | – | KF901804 | KF902211 | KF903105 | KF902807 | |
| CBS 120740 = CPC 13290 | Eucalyptus sp. | Australia | B.A. Summerell | KF901834 | – | – | KF901515 | KF902212 | KF903106 | KF902808 | |
| CPC 13350 | Eucalyptus camaldulensis × Eucalyptus urophylla | Venezuela | M.J. Wingfield | KF902164 | – | – | KF901803 | KF902210 | KF903104 | KF902806 | |
| P. colombiensis | CBS 110967 = CPC 1104 = CMW 11255ET | Eucalyptus urophylla | Colombia | M.J. Wingfield | KF901968 | KF903413 | KF902611 | KF901633 | KF902295 | KF903178 | KF902880 |
| CBS 110968 = CPC 1105ET | Eucalyptus urophylla | Colombia | M.J. Wingfield | KF901969 | KF903414 | KF902612 | KF901634 | KF902296 | KF903179 | KF902881 | |
| CBS 110969 = CPC 1106 = CMW 4944ET | Eucalyptus urophylla | Colombia | M.J. Wingfield | KF901970 | KF903415 | KF902613 | KF901635 | KF902297 | KF903180 | KF902882 | |
| P. crystallina | CBS 110699 = CPC 2155 | Leucospermum sp. | USA: Hawaii | P.W. Crous & M.E. Palm | KF902161 | KF903400 | KF902566 | KF901801 | KF902240 | KF903127 | KF902830 |
| CBS 111044 = CPC 1178 | Leaf litter of Eucalyptus grandis × Eucalyptus camaldulensis | South Africa | M.J. Wingfield | KF902050 | KF903423 | KF902567 | KF901703 | KF902241 | KF903128 | KF902831 | |
| CBS 111045 = CPC 1179 | Leaf litter of Eucalyptus grandis × Eucalyptus camaldulensis | South Africa | M.J. Wingfield | KF902051 | KF903424 | KF902568 | KF901704 | KF902242 | KF903129 | KF902832 | |
| CBS 681.95 = CPC 802 = CMW 3033ET | Eucalyptus bicostata | South Africa | M.J. Wingfield | KF902052 | KF903590 | KF902569 | KF901705 | KF902243 | KF903130 | KF902833 | |
| CPC 11453 | Eucalyptus sp. | Brazil | A.C. Alfenas | KF901934 | KF903601 | KF902565 | KF901609 | KF902239 | KF903126 | KF902829 | |
| P. heimii | CBS 110682 = CPC 760 = CMW 4942ET | Eucalyptus sp. | Madagascar | P.W. Crous | KF902013 | KF903399 | KF902575 | KF901671 | KF902249 | KF903136 | KF902839 |
| CPC 10992 | Eucalyptus sp. | Colombia | M.J. Wingfield | KF901964 | KF903593 | KF902570 | KF901629 | KF902244 | KF903131 | KF902834 | |
| CPC 11441 | Eucalyptus sp. | Brazil | A.C. Alfenas | KF901935 | KF903600 | KF902571 | KF901610 | KF902245 | KF903132 | KF902835 | |
| CPC 11548 | Eucalyptus sp. | Brazil | A.C. Alfenas | KF901936 | KF903602 | KF902572 | KF901611 | KF902246 | KF903133 | KF902836 | |
| CPC 11716 | – | Brazil | A.C. Alfenas | KF901937 | KF903605 | KF902573 | KF901612 | KF902247 | KF903134 | KF902837 | |
| CPC 11926 | Acacia auriculiformis | Thailand | W. Himaman | KF902131 | KF903607 | KF902581 | KF901773 | KF902257 | KF903144 | KF902847 | |
| CPC 13099 | Eucalyptus dunnii | Australia | A.J. Carnegie | KF901841 | KF903635 | KF902574 | KF901519 | KF902248 | KF903135 | KF902838 | |
| P. heimioides | CBS 111190 = CPC 1312 = CMW 3046ET | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901998 | KF903440 | KF902576 | KF901659 | KF902250 | KF903137 | KF902840 |
| CBS 111364 = CPC 1311 = CMW 14776 | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901815 | KF903446 | KF902577 | KF901500 | KF902251 | KF903138 | KF902841 | |
| P. holualoana | CBS 110698 = CPC 2126ET | Leucospermum sp. | USA: Hawaii | P.W. Crous & M.E. Palm | KJ380896 | – | – | AY260087 | KJ380900 | – | – |
| P. irregulariramosa | CBS 111211 = CPC 1362 = CMW 5223ET | Eucalyptus saligna | South Africa | M.J. Wingfield | KF902053 | KF903441 | KF902578 | KF901706 | KF902252 | KF903139 | KF902842 |
| P. konae | CBS 111028 = CPC 2125ET | Leucadendron cv. ‘Safari Sunset’ | USA: Hawaii | P.W. Crous & M.E. Palm | KF902158 | KF903422 | – | KF901798 | KF902253 | KF903140 | KF902843 |
| CBS 111261 = CPC 2123ET | Leucadendron cv. ‘Safari Sunset’ | USA: Hawaii | P.W. Crous & M.E. Palm | KF902159 | KF903442 | – | KF901799 | KF902254 | KF903141 | KF902844 | |
| P. thailandica | CBS 116367 = CPC 10547ET | Acacia mangium | Thailand | K. Pongpanich | KF902134 | – | – | KF901776 | KF902337 | KF903221 | KF902923 |
| CBS 120723 = CPC 13478 | Eucalyptus camaldulensis | Thailand | W. Himaman | KF902135 | KF903524 | KF902648 | KF901777 | KF902338 | KF903222 | KF902924 | |
| CBS 121389 = X882 = CIRAD 81 | Musa sp. | Brazil | – | KF902023 | – | – | KF901679 | KF902339 | KF903223 | KF902925 | |
| CBS 121390 = X883 = CIRAD 1165 | Musa sp. | Cameroon | – | KF901956 | – | – | KF901624 | KF902340 | KF903224 | KF902926 | |
| Paramycosphaerella intermedia | CBS 114356 = CPC 10902 = NZFS 301 K/1 | Eucalyptus saligna | New Zealand | L. Renney | KF902026 | KF903466 | KF902579 | KF901681 | KF902255 | KF903142 | KF902845 |
| CBS 114415 = CPC 10922 = NZFS 301.13 | Eucalyptus saligna | New Zealand | L. Renney | KF902027 | KF903468 | KF902580 | KF901682 | KF902256 | KF903143 | KF902846 | |
| Pa. marksii | CBS 110693 = CPC 823 | Eucalyptus grandis × saligna | South Africa | G. Kemp | DQ204758 | – | – | DQ267597 | – | – | – |
| CBS 110750 = CPC 822 = CMW 14778 | Eucalyptus grandis × saligna | South Africa | G. Kemp | KF902056 | KF903404 | KF902586 | KF901709 | KF902262 | KF903149 | KF902852 | |
| CBS 110920 = CPC 935 | Eucalyptus globulus | Australia: Victoria | A.J. Carnegie | KF901842 | KF903410 | KF902582 | KF901520 | KF902258 | KF903145 | KF902848 | |
| CBS 110963 = CPC 4632 | Musa sp. | South Africa | K. Surridge | KF902054 | KF903411 | KF902583 | KF901707 | KF902259 | KF903146 | KF902849 | |
| CBS 110964 = CPC 4633 | Musa sp. | South Africa | K. Surridge | KF902055 | KF903412 | KF902584 | KF901708 | KF902260 | KF903147 | KF902850 | |
| CBS 110981 = CPC 1073 | Eucalyptus sp. | Tanzania | M.J. Wingfield | KF902103 | KF903417 | KF902585 | KF901749 | KF902261 | KF903148 | KF902851 | |
| Parapenidiella pseudotasmaniensis | CBS 124991 = CPC 12400ET | Eucalyptus globulus | Australia | I.W. Smith | KF901844 | KF903562 | KF902589 | KF901522 | KF902265 | KF903152 | KF902855 |
| Para. tasmaniensis | CBS 111687 = CMW 14780 = CPC 1555ET | Eucalyptus nitens | Australia: Tasmania | M.J. Wingfield | KF901843 | KF903451 | KF902587 | KF901521 | KF902263 | KF903150 | KF902853 |
| CBS 114556 = CMW 14663 = CPC 1556ET | Eucalyptus nitens | Australia: Tasmania | M.J. Wingfield | KF902132 | KF903469 | KF902588 | KF901774 | KF902264 | KF903151 | KF902854 | |
| Parateratosphaeria altensteinii | CBS 123539 = CPC 15133ET | Encephalartos altensteinii | South Africa | P.W. Crous, M.K. Crous, M. Crous & K. Raath | KF937230 | – | – | – | KF937267 | – | – |
| Pata. bellula | CBS 111700 = CPC 1821EET | Protea eximia | South Africa | J.E. Taylor | KF937232 | – | – | – | – | – | – |
| Pata. karinae | CBS 128774 = CPC 18255ET | Phaenocoma prolifera | South Africa | K.L. Crous & P.W. Crous | KF902091 | – | – | – | KF902266 | – | – |
| Pata.cf. bellula | CBS 111699 = CPC 1816 | Leucospermum sp. | South Africa | J.E. Taylor | KF937231 | – | – | – | – | – | – |
| Pata. marasasii | CBS 122899 = CPC 14889ET | Protea sp. | South Africa | P.W. & M. Crous | KF937233 | – | – | – | KF937268 | – | – |
| Pata. persoonii | CBS 122895 = CPC 13972ET | Protea sp. | South Africa | P.W. Crous & L. Mostert | KF937234 | – | – | – | – | – | – |
| CBS 122896 = CPC 14846 = STE-U 6389 | Euchaetis meridionalis | South Africa | A.R. Wood | KF937235 | – | – | – | – | – | – | |
| Passalora eucalypti | CBS 111318 = CPC 1457ET | Eucalyptus saligna | Brazil | P.W. Crous & A.C. Alfenas | KF901938 | KF903445 | KF902590 | KF901613 | KF902267 | KF903153 | KF902856 |
| Pas. intermedia | CBS 124154 = CPC 15745 = A39ET | Eucalyptus camaldulensis | Madagascar | M.J. Wingfield | KF902014 | KF903548 | KF902591 | KF901672 | KF902268 | KF903154 | KF902857 |
| Pas. leptophlebiae | CBS 129524 = CPC 18480ET | Eucalyptus leptophlebia | Brazil | P.W. Crous, A.C. Alfenas, R. Alfenas & O.L. Pereira | KF901939 | KF903580 | – | KF901614 | KF902269 | KF903155 | KF902858 |
| Pas. zambiae | CBS 112970 = CPC 1228ET | Eucalyptus globulus | Zambia | T. Coutinho | KF902175 | KF903458 | KF902593 | KF901811 | KF902271 | KF903157 | – |
| CBS 112971 = CPC 1227ET | Eucalyptus globulus | Zambia | T. Coutinho | KF902174 | KF903459 | KF902592 | KF901810 | KF902270 | KF903156 | KF902859 | |
| Penidiella columbiana | CBS 486.80ET | Paepalanthus columbianus | Colombia | W. Gams | KF901965 | KF903587 | KF902594 | KF901630 | KF902272 | KF903158 | KF902860 |
| Petrophila incerta | CBS 118287 = TRN77 | Rock sample | Spain | C. Ruibal | GU323963 | – | – | – | KF310101 | – | – |
| CBS 118608 = TRN139bET | Rock sample | Spain | C. Ruibal | KF310030 | – | – | – | KF310091 | – | – | |
| Phaeophleospora eugeniae | CPC 15143 | Eugenia uniflora | Brazil | A.C. Alfenas | KF901940 | KF903674 | KF902596 | KF901615 | KF902274 | KF903160 | KF902862 |
| CPC 15159 | Eugenia uniflora | Brazil | A.C. Alfenas | KF902095 | KF903675 | KF902595 | KF901742 | KF902273 | KF903159 | KF902861 | |
| Pha. eugeniicola | CPC 2557ET | Eugenia klotzschiana | Brazil | A.C. Alfenas | KF901845 | – | – | KF901523 | KF902275 | – | – |
| Pha. gregaria | CBS 110501 | Eucalyptus globulus | Australia | A. Maxwell | KF901846 | KF903396 | KF902597 | KF901524 | KF902276 | KF903161 | KF902863 |
| CBS 111166 = CPC 1224 | Eucalyptus cladocalyx | South Africa | A.R. Wood | KF902057 | KF903433 | KF902598 | KF901710 | KF902277 | KF903162 | KF902864 | |
| CBS 111167 = CPC 1225 | Eucalyptus cladocalyx | South Africa | A.R. Wood | KF902058 | KF903434 | KF902599 | KF901711 | KF902278 | KF903163 | KF902865 | |
| CBS 111519 = CPC 1191 | Eucalyptus sp. | South Africa | P.W. Crous | KF902059 | KF903448 | KF902600 | KF901712 | KF902279 | KF903164 | KF902866 | |
| CBS 114662 = CPC 1193ET of M. endophytica | Eucalyptus sp. | South Africa | P.W. Crous | KF902060 | KF903470 | KF902601 | KF901713 | KF902280 | KF903165 | KF902867 | |
| Pha. scytalidii | CBS 118493 = CPC 10998ET | Eucalyptus urophylla | Colombia | M.J. Wingfield | KF901966 | KF903493 | KF902603 | KF901631 | KF902282 | KF903167 | KF902869 |
| CBS 516.93 = CPC 653 | Eucalyptus globulus | Brazil | F.A. Ferreira | KF901941 | KF903588 | KF902602 | KF901616 | KF902281 | KF903166 | KF902868 | |
| Pha. stonei | CBS 120830 = CPC 13330ET | Eucalyptus sp. | Australia | P.W. Crous & J. Stone | KF901847 | KF903645 | KF902604 | KF901525 | KF902283 | KF903168 | KF902870 |
| Pha. stramenti | CBS 118909 = CPC 11545ET | Leaf litter of Eucalyptus sp. | Brazil | A.C. Alfenas | KF901942 | KF903506 | KF902605 | KF901617 | KF902284 | KF903169 | KF902871 |
| Phaeothecoidea eucalypti | CBS 120831 = CPC 12918ET | Eucalyptus botryoides | Australia: New South Wales | B.A. Summerell | KF901848 | – | – | KF901526 | KF902285 | KF903170 | KF902872 |
| Phaeo. intermedia | CBS 124994 = CPC 13711ET | Eucalyptus globulus | Australia: Bruny Island | B.A. Summerell, P. Summerell & A. Summerell | KF902106 | KF903564 | KF902606 | KF901752 | KF902286 | KF903171 | KF902873 |
| CPC 13711 | Eucalyptus globulus | Australia: Bruny Island | B.A. Summerell, P. Summerell & A. Summerell | GQ852628 | – | – | – | KF937269 | – | – | |
| Phaeo. minutispora | CBS 124995 = CPC 13710ET | Eucalyptus globulus | Australia: Bruny Island | B.A. Summerell, P. Summerell & A. Summerell | KF902107 | – | – | – | KF902287 | – | – |
| CPC 13710 | Eucalyptus globulus | Australia: Bruny Island | B.A. Summerell, P. Summerell & A. Summerell | KF902108 | KF903659 | KF902607 | KF901753 | KF902288 | KF903172 | KF902874 | |
| Piedraia hortae var. hortae | CBS 480.64 | Human hair | Brazil | A.C. Batista | KF901943 | – | – | – | KF902289 | – | – |
| Piedraia hortae var. paraguayensis | CBS 276.32 | – | – | – | KF901816 | – | – | – | – | – | – |
| Pie. quintanilhae | CBS 327.63ET | Genetta tigrina | Central African Republic | N. van Uden | KF901957 | – | – | – | – | – | – |
| Polychaeton citri | CBS 116435 | Citrus aurantium | Iran | R. Zare & W. Gams | GU214469 | – | – | – | – | – | – |
| Polyphialoseptoria tabebuiae-serratifoliae | CBS 112650 = CPC 3944ET | Tabebuia serratifolia | Brazil | A.C. Alfenas | KF251716 | – | – | – | KF252218 | – | – |
| Pseudocercospora basiramifera | CBS 111072 = CPC 1266ET | Eucalyptus pellita | Thailand | M.J. Wingfield | KF902028 | KF903428 | KF902608 | KF901683 | KF902291 | KF903174 | KF902876 |
| CBS 114757 = CPC 1267ET | Eucalyptus pellita | Thailand | M.J. Wingfield | KF901817 | KF903472 | KF902609 | KF901501 | KF902292 | KF903175 | KF902877 | |
| Ps. basitruncata | CBS 114664 = CPC 1202 = CMW 14914 | Eucalyptus grandis | Colombia | M.J. Wingfield | KF901967 | KF903471 | KF902610 | KF901632 | KF902293 | KF903176 | KF902878 |
| Ps. chiangmaiensis | CBS 123244 = CPC 15412ET | Eucalyptus camaldulensis | Thailand | P. Suwannawong | KF902133 | KF903544 | – | KF901775 | KF902294 | KF903177 | KF902879 |
| Ps. crousii | CBS 119487 = Lynfield 1260 | Eucalyptus sp. | New Zealand | C.F. Hill | KF902029 | KF903511 | KF902614 | KF901684 | KF902298 | KF903181 | KF902883 |
| Ps. eucalyptorum | CBS 110722 = CPC 15 | Eucalyptus nitens | South Africa | P.W. Crous | KF902061 | KF903401 | KF902618 | KF901714 | KF902302 | KF903185 | KF902887 |
| CBS 110723 = CPC 17 | Eucalyptus nitens | South Africa | P.W. Crous | KF902062 | KF903402 | KF902619 | KF901715 | KF902303 | KF903186 | KF902888 | |
| CBS 110776 = CPC 12 | Eucalyptus nitens | South Africa | P.W. Crous | KF902063 | KF903405 | KF902620 | KF901716 | KF902304 | KF903187 | KF902889 | |
| CBS 110777 = CPC 16 = CMW 5228ET of Ps. eucalyptorum | Eucalyptus nitens | South Africa | P.W. Crous | KF901944 | KF903406 | KF902621 | KF901618 | KF902305 | KF903188 | KF902890 | |
| CBS 110903 = CPC 14 | Eucalyptus nitens | South Africa | P.W. Crous | KF902064 | KF903408 | KF902622 | KF901717 | KF902306 | KF903189 | KF902891 | |
| CBS 111268 = CPC 1195 | Eucalyptus grandis | Kenya | T. Coutinho | KF901818 | KF903443 | KF902623 | KF901502 | KF902307 | KF903190 | KF902892 | |
| CBS 114242 = CPC 10390 = CMW 14908ET of Ps. pseudoeucalyptorum | Eucalyptus globulus | Spain | J.P. Mansilla | KF902097 | – | – | KF901744 | KF902328 | KF903212 | KF902914 | |
| CBS 114866 = CPC 11 | Eucalyptus nitens | South Africa | P.W. Crous | KF902067 | KF903474 | KF902627 | KF901720 | KF902311 | KF903195 | KF902897 | |
| CBS 116303 = CPC 13 | Eucalyptus nitens | South Africa | P.W. Crous | KF902065 | KF903482 | KF902625 | KF901718 | KF902308 | KF903192 | KF902894 | |
| CBS 116304 = CPC 10 | Eucalyptus nitens | South Africa | P.W. Crous | KF902066 | KF903483 | KF902626 | KF901719 | KF902309 | KF903193 | KF902895 | |
| CBS 116359 = CPC 3751 | Eucalyptus sp. | Spain: Madeira | – | KF902018 | KF903484 | – | KF901676 | KF902310 | KF903194 | KF902896 | |
| CBS 132015 = CPC 11713 | Eucalyptus globulus | Spain | P. Mansilla | KF902096 | KF903604 | KF902615 | KF901743 | KF902299 | KF903182 | KF902884 | |
| CBS 132029 = CPC 12406 | Eucalyptus globulus | Australia | I.W. Smith | KF901849 | KF903615 | KF902616 | KF901527 | KF902300 | KF903183 | KF902885 | |
| CBS 132032 = CPC 12802 | Eucalyptus globulus | Portugal | A.J.L. Phillips | KF902034 | KF903625 | KF902634 | KF901689 | KF902322 | KF903206 | KF902908 | |
| CBS 132033 = CPC 12957 | Eucalyptus deanei | Australia | B.A. Summerell | KF901850 | KF903630 | KF902617 | KF901528 | KF902301 | KF903184 | KF902886 | |
| CBS 132034 = CPC 13455 | Eucalyptus sp. | Portugal | P.W. Crous | KF902035 | KF903649 | KF902638 | KF901690 | KJ564342 | KF903210 | KF902912 | |
| CBS 132035 = CPC 13769 | Eucalyptus punctata | South Africa | P.W. Crous | KF902071 | KF903660 | KF902635 | KF901724 | KF902323 | KF903207 | KF902909 | |
| CBS 132105 = CPC 13926 | Eucalyptus sp. | USA: California | S. Denman | KF902141 | KF903669 | KF902636 | KF901783 | KF902324 | KF903208 | KF902910 | |
| CBS 132114 = CPC 13816 | Eucalyptus glaucescens | United Kingdom | S. Denman | KF902140 | KF903661 | KF902639 | KF901782 | KF902327 | KF903211 | KF902913 | |
| CBS 132309 = CPC 12568 | Eucalyptus nitens | Australia: Tasmania | C. Mohammed | KF902109 | KF903621 | KF902637 | KF901754 | KF902325 | KF903209 | KF902911 | |
| Ps. flavomarginata | CBS 118824 = CMW 13594ET | Eucalyptus camaldulensis | Thailand | M.J. Wingfield | KF901961 | KF903505 | – | KF901627 | KF902312 | KF903196 | KF902898 |
| Ps. fori | CBS 113285 = CMW 9095ET | Eucalyptus grandis | South Africa | G.C. Hunter | KF902069 | KF903462 | KF902629 | KF901722 | KF902314 | KF903198 | KF902900 |
| CBS 113286 = CMW 9095 | Eucalyptus sp. | South Africa | J. Roux | KF902068 | KF903463 | KF902628 | KF901721 | KF902313 | KF903197 | KF902899 | |
| Ps. gracilis | CBS 111189 = CPC 1315 | Eucalyptus urophylla | Indonesia | M.J. Wingfield | KF902000 | KF903439 | KF902632 | KF901661 | KF902317 | KF903201 | KF902903 |
| CBS 116291 = CPC 10503 | Eucalyptus globulus | China | A. Aptroot | KF901960 | – | KF902624 | – | – | KF903191 | KF902893 | |
| CPC 11144 | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901971 | KF903594 | KF902630 | KF901636 | KF902315 | KF903199 | KF902901 | |
| CPC 11181 | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF901999 | KF903595 | KF902631 | KF901660 | KF902316 | KF903200 | KF902902 | |
| Ps. madagascariensis | CBS 124155 = CPC 14621ET | Eucalyptus camaldulensis | Madagascar | M.J. Wingfield | KF902015 | KF903549 | – | KF901673 | KF902318 | KF903202 | KF902904 |
| Ps. marginalis | CBS 131582 = CPC 12497ET | Fraxinus rhynchophylla | South Korea | H.D. Shin | KF902010 | KF903618 | KF902641 | KF901668 | KF902330 | KF903214 | KF902916 |
| Ps. natalensis | CBS 111069 = CPC 1263 = CMW 14777ET | Eucalyptus nitens | South Africa | T. Coutinho | KF902070 | KF903427 | – | KF901723 | KF902319 | KF903203 | KF902905 |
| Ps. norchiensis | CBS 120738 = CPC 13049ET | Eucalyptus sp. | Italy | W. Gams | KF902005 | KF903531 | KF902633 | KF901665 | KF902320 | KF903204 | KF902906 |
| Ps. paraguayensis | CBS 111286 = CPC 1459 = CMW 14779 | Eucalyptus nitens | Brazil | P.W. Crous | KF901945 | KF903444 | – | KF901619 | KF902321 | KF903205 | KF902907 |
| Ps. pyracanthigena | CBS 131589 = CPC 10808ET | Pyracantha angustifolia | South Korea | M.J. Park | KF902009 | KF903591 | – | KF901667 | KF902290 | KF903173 | KF902875 |
| Ps. robusta | CBS 111175 = CPC 1269 = CMW 5151ET | Eucalyptus robur | Malaysia | M.J. Wingfield | KF902020 | KF903437 | KF902640 | KF901678 | KF902329 | KF903213 | KF902915 |
| Ps. schizolobii | CBS 120029 = CPC 12962ET | Schizolobium parahybum | Ecuador | M.J. Wingfield | KF251826 | – | – | – | KF252326 | – | – |
| Ps. sphaerulinae | CBS 112621 = CPC 4314 | Eucalyptus sp. | Chile | P.W. Crous | KF901958 | – | KF902642 | KF901625 | KF902331 | KF903215 | KF902917 |
| Ps. subulata | CBS 118489 = CPC 10849 | Eucalyptus botryoides | New Zealand | M. Dick | KF902030 | KF903492 | KF902643 | KF901685 | KF902332 | KF903216 | KF902918 |
| Ps. tereticornis | CBS 124996 = CPC 12960 | Eucalyptus nitens | Australia | A.J. Carnegie | KF901852 | KF903565 | KF902645 | KF901530 | KF902334 | KF903218 | KF902920 |
| CBS 125214 = CPC 13299ET | Eucalyptus tereticornis | Australia | P.W. Crous & B. Summerell | KF901854 | KF903641 | KF902647 | KF901532 | KF902336 | KF903220 | KF902922 | |
| CPC 13008 | Eucalyptus tereticornis | Australia | A.J. Carnegie | KF901853 | KF903631 | KF902646 | KF901531 | KF902335 | KF903219 | KF902921 | |
| CPC 13315 | Eucalyptus tereticornis | Australia | P.W. Crous & B. Summerell | KF901851 | KF903643 | KF902644 | KF901529 | KF902333 | KF903217 | KF902919 | |
| Ps. vitis | CBS 132012 = CPC 11595 | Vitis vinifera | South Korea | H.D. Shin | KF902011 | KF903603 | KF902649 | KF901669 | KF902341 | KF903225 | KF902927 |
| Pseudoramichloridium brasilianum | CBS 283.92ET | Forrest soil | Brazil | D. Atilli | EU041854 | _ | _ | _ | _ | – | – |
| Pso. henryi | CBS 124775 = CPC 13121ET | Corymbia henryi | Australia | A.J. Carnegie | KF901857 | KF903559 | KF902652 | KF901535 | KF902344 | KF903227 | KF902930 |
| CPC 13122 | Corymbia henryi | Australia | A.J. Carnegie | KF901855 | KF903639 | KF902650 | KF901533 | KF902342 | KF903226 | KF902928 | |
| Pseudoteratosphaeria flexuosa | CBS 110743 = CPC 673 | Eucalyptus globulus | Colombia | M.J. Wingfield | KF902098 | KF903403 | KF902653 | KF901745 | KF902345 | KF903228 | KF902931 |
| CBS 111012 = CPC 1109ET | Eucalyptus globulus | Colombia | M.J. Wingfield | KF902110 | KF903421 | KF902654 | KF901755 | KF902346 | – | KF902932 | |
| CBS 111048 = CPC 1199 | Eucalyptus grandis | Colombia | M.J. Wingfield | KF901978 | KF903425 | KF902723 | KF901643 | KF902433 | KF903309 | KF903007 | |
| CBS 111163 = CPC 1201 | Eucalyptus grandis | Colombia | M.J. Wingfield | KF901979 | KF903430 | KF902724 | KF901644 | KF902434 | KF903310 | KF903008 | |
| Pet. gamsii | CBS 118495 = CPC 11138ET | Eucalyptus sp. | India | W. Gams & M. Arzanlou | KF901990 | KF903494 | KF902655 | KF901650 | KF902347 | KF903229 | KF902933 |
| Pet. ohnowa | CBS 112896 = CPC 1004ET | Eucalyptus grandis | South Africa | M.J. Wingfield | KF901946 | KF903457 | KF902656 | KF901620 | KF902348 | KF903230 | KF902934 |
| CBS 112973 = CPC 1005 | Eucalyptus grandis | South Africa | M.J. Wingfield | GU214511 | – | – | AF173299 | – | – | – | |
| CBS 110949 = CPC 1006 | Eucalyptus grandis | South Africa | M.J. Wingfield | – | – | – | AY725575 | – | – | – | |
| CBS 113290 = CMW 9102 | Eucalyptus smithii | South Africa | G.C. Hunter | KF937236 | – | – | – | KF937270 | – | – | |
| Pet. perpendicularis | CBS 118367 = CPC 10983ET | Eucalyptus eurograndis | Colombia | M.J. Wingfield | KF901972 | KF903491 | – | KF901637 | KF902350 | KF903232 | KF902936 |
| Pet. secundaria | CBS 111002 = CPC 1112 | Eucalyptus grandis | Colombia | M.J. Wingfield | KF901858 | KF903420 | KF902659 | KF901536 | KF902352 | KF903234 | KF902938 |
| CBS 115608 = CPC 504 | Eucalyptus grandis | Brazil | A.C. Alfenas | KF901859 | KF903476 | KF902660 | KF901537 | KF902353 | KF903235 | KF902939 | |
| CBS 118507 = CPC 11551ET | Eucalyptus sp. | Brazil | A.C. Alfenas | KF901947 | KF903503 | KF902661 | KF901621 | KF902354 | KF903236 | KF902940 | |
| CPC 10989 | Eucalyptus sp. | Colombia | M.J. Wingfield | KF901973 | KF903592 | KF902658 | KF901638 | KF902351 | KF903233 | KF902937 | |
| Pet. stramenticola | CBS 118506 = CPC 11438ET | Eucalyptus sp. leaf litter | Brazil | A.C. Alfenas | KF901948 | KF903502 | KF902662 | KF901622 | KF902355 | KF903237 | KF902941 |
| CBS 120737 = CPC 13373ET | Eucalyptus urophylla | Venezuela | M.J. Wingfield | KF902167 | KF903530 | KF902657 | KF901806 | KF902349 | KF903231 | KF902935 | |
| Queenslandipenidiella kurandae | CBS 121715 = CPC 13333ET | Exudates of bleeding stem cankers of unidentified trees | Australia: Queensland | P.W. Crous & J.K. Stone | KF901860 | KF903538 | KF902663 | KF901538 | KF902356 | KF903238 | KF902942 |
| Ramichloridium apiculatum | CBS 400.76 | Soil sample | Pakistan | A. Kamal | EU041851 | – | – | – | KJ564337 | – | – |
| Ramularia endophylla | CBS 113265EET | Dead leaf of Quercus robur | Netherlands | G. Verkley | KF902072 | KF903461 | KF902665 | KF901725 | KF902358 | KF903240 | KF902944 |
| Ram. eucalypti | CBS 120726 = CPC 13043ET | Eucalyptus grandiflora | Italy | W. Gams | KF902006 | KF903525 | – | KF901666 | KF902359 | KF903241 | KF902945 |
| Ram. pratensis var. pratensis | CPC 11294 | Rumex crispus | South Korea | H.D. Shin | KF902111 | KF903599 | – | KF901756 | KF902360 | KF903242 | KF902946 |
| Ramulispora sorghi | CBS 110579 = CPC 906 | Sorghum bicolor | South Africa | D. Nowell | GQ852654 | – | – | – | KF937271 | – | – |
| Readeriella angustia | CBS 124997 = CPC 13608ET | Eucalyptus delegatensis | Australia: Tasmania | B.A. Summerell | KF902114 | KF903566 | KF902669 | KF901759 | KF902364 | KF903246 | KF902950 |
| CBS 124998 = CPC 13618 | Eucalyptus delegatensis | Australia: Tasmania | B.A. Summerell | KF902113 | KF903567 | KF902668 | KF901758 | KF902363 | KF903245 | KF902949 | |
| CPC 13621 | Eucalyptus regnans | Australia: Tasmania | B.A. Summerell, P. Summerell & A. Summerell | KF902112 | KF903654 | KF902666 | KF901757 | KF902361 | KF903243 | KF902947 | |
| CPC 13630 | Eucalyptus delegatensis | Australia: Tasmania | B.A. Summerell | KF901819 | KF903655 | KF902667 | KF901503 | KF902362 | KF903244 | KF902948 | |
| Read. callista | CBS 124986 = CPC 13615EET | Eucalyptus sclerophylla | Australia: New South Wales | B.A. Summerell | KF442562 | – | – | – | KF442602 | – | – |
| CPC 12841 | Eucalyptus cannonii | Australia: New South Wales | B.A. Summerell | KF901862 | KF903627 | KF902670 | KF901540 | KF902365 | KF903247 | KF902951 | |
| CPC 13605 | Eucalyptus multicaulis | Australia: New South Wales | B.A. Summerell | KF901863 | KF903652 | KF902671 | KF901541 | KF902366 | KF903248 | KF902952 | |
| CPC 13615 | Eucalyptus sclerophylla | Australia: New South Wales | B.A. Summerell | KF901974 | KF903653 | KF902672 | KF901639 | KF902367 | KF903249 | KF902953 | |
| Read. deanei | CBS 134746 = CPC 12715ET | Eucalyptus deanei | Australia: New South Wales | B.A. Summerell | KF901864 | KF903583 | KF902673 | KF901542 | KF902368 | KF903250 | KF902954 |
| Read. dendritica | CBS 120032 = CPC 12709ET | Eucalyptus deanei | Australia: New South Wales | B.A. Summerell | KF901865 | KF903623 | KF902674 | KF901543 | KF902369 | KF903251 | KF902955 |
| Read. dimorphospora | CBS 120034 = CPC 12636ET | Eucalyptus nitens | Australia: Tasmania | C. Mohammed | KF901866 | KF903622 | KF902675 | KF901544 | KF902370 | KF903252 | KF902956 |
| Read. eucalypti | CBS 120079 = CPC 11184EET | Eucalyptus globulus | Spain | M.J. Wingfield | KJ380898 | – | – | – | KJ380903 | – | – |
| CPC 13401 | Eucalyptus miniata | Australia | B.A. Summerell | KF901867 | KF903647 | – | KF901545 | KF902371 | KF903253 | – | |
| Read. eucalyptigena | CBS 124999 = CPC 13026ET | Eucalyptus dives | Australia: New South Wales | B.A. Summerell | KF901868 | KF903568 | KF902676 | KF901546 | KF902372 | KF903254 | KF902957 |
| Read. limoniforma | CBS 134745 = CPC 12727ET | Eucalyptus sp. | Australia: New South Wales | B.A. Summerell | KF901869 | KF903582 | KF902677 | KF901547 | KF902373 | KF903255 | KF902958 |
| Read. menaiensis | CBS 125003 = CPC 14447ET | Eucalyptus oblonga | Australia: New South Wales | B.A. Summerell | KF901870 | KF903572 | KF902678 | KF901548 | KF902374 | KF903256 | KF902959 |
| Read. mirabiliaffinis | CBS 134744 = CPC 13611ET | Eucalyptus delegatensis | Australia: Tasmania | P. & B.A. Summerell | KF902115 | – | KF902679 | KF901760 | KF902375 | – | – |
| Read. mirabilis | CBS 125000 = CPC 12370EET | Eucalyptus globulus | Australia: Victoria | I.W. Smith | KF901871 | KF903569 | KF902680 | KF901549 | KF902376 | KF903257 | KF902960 |
| Read. nontingens | CPC 14444 | Eucalyptus oblonga | Australia | B.A. Summerell | KF902073 | KF903671 | KF902682 | KF901726 | KF902378 | KF903259 | KF902962 |
| Read. novaezelandiae | CBS 114357 = CPC 10895ET | Eucalyptus botryoides | New Zealand | M.A. Dick | KF901820 | KF903467 | KF902683 | KF901504 | KF902379 | KF903260 | KF902963 |
| Read. patrickii | CBS 124987 = CPC 13602ET | Eucalyptus amygdalina | Australia: Tasmania | P. & B.A. Summerell | KF902001 | KF903651 | KF902684 | KF901662 | KF902380 | KF903261 | KF902964 |
| Read. pseudocallista | CBS 125001 = CPC 13599ET | Eucalyptus prominula | Australia | B.A. Summerell | KF901861 | KF903570 | KF902664 | KF901539 | KF902357 | KF903239 | KF902943 |
| Read. readeriellophora | CBS 114240 = CPC 10375ET | Eucalyptus globulus | Spain | J.P. Mansilla | KJ380899 | – | – | AY725577 | KJ380904 | – | – |
| CBS 120209 = CPC 12920 | Eucalyptus sp. | Australia | A.J. Carnegie | KF901873 | KF903628 | KF902685 | KF901551 | KF902381 | KF903262 | KF902965 | |
| Readeriella sp. | CPC 12379 | Eucalyptus sp. | Australia | R. Park | KF901872 | KF903614 | KF902681 | KF901550 | KF902377 | KF903258 | KF902961 |
| Readeriella sp. | CBS 120733 = CPC 12820 | Eucalyptus nitens | Australia: New South Wales | A.J. Carnegie | KJ380897 | – | – | – | KJ380902 | – | – |
| Read. tasmanica | CBS 125002 | Eucalyptus delegatensis | Australia: Tasmania | B.A. Summerell | KF902116 | KF903571 | KF902687 | KF901761 | KF902383 | KF903264 | KF902967 |
| CBS 125002 = CPC 13631ET | Eucalyptus delegatensis | Australia: Tasmania | B.A. Summerell | KF902074 | KF903656 | KF902686 | KF901727 | KF902382 | KF903263 | KF902966 | |
| Recurvomyces mirabilis | CBS 119434 = CCFEE 5264ET | Sandstone sample | Antarctica | L. Zucconi | GU250372 | – | – | – | KF310059 | – | – |
| CCFEE 5475 | Rock sample | Italy | – | KC315876 | – | – | – | KF310060 | – | – | |
| Recurvomyces sp. | CCFEE 5575 | Rock sample | UK | – | KF310018 | – | – | – | KF310072 | – | – |
| Schizothyrium pomi | CBS 228.57 | – | Italy | R. Ciferri | KF902007 | – | – | – | KF902384 | – | – |
| CBS 486.50 | Polygonum sachalinense | The Netherlands | J.A. von Arx | KF902024 | – | – | – | KF902385 | – | – | |
| Scorias spongiosa | CBS 325.33 | Aphid body | – | – | KF901821 | – | – | – | – | – | – |
| Septoria eucalyptorum | CBS 118505 = CPC 11282ET | Eucalyptus leaf litter | India | W. Gams & M. Arzanlou | KF901991 | KF903501 | KF902688 | KF901651 | KF902386 | KF903265 | KF902968 |
| S. lysimachiae | CBS 123794 | Lysimachia sp. | Czech Republic | G.J.M. Verkley | KF251972 | – | – | – | KF252465 | – | – |
| septoria-like sp. | CBS 134910 = CPC 19500 | Tibouchina herbacea | Brazil | D.F. Parreira | KF302409 | – | – | – | KF302397 | – | – |
| Sonderhenia eucalypticola | CPC 11251 | Eucalyptus globulus | Spain | M.J. Wingfield | KF902099 | KF903596 | KF902689 | KF901746 | KF902387 | KF903266 | KF902969 |
| CPC 11252 | Eucalyptus globulus | Spain | M.J. Wingfield | KF902100 | KF903597 | KF902691 | KF901747 | KF902389 | KF903268 | KF902971 | |
| CBS 112502 = CPC 3749 | Eucalyptus sp. | Spain | P.W. Crous | KF902019 | KF903454 | KF902690 | KF901677 | KF902388 | KF903267 | KF902970 | |
| S. eucalyptorum | CBS 120220 = CPC 12553 | Eucalyptus coccifera | Australia: Tasmania | C. Mohammed | KF901822 | – | – | KF901505 | KF902390 | – | KF902972 |
| Sphaerulina cercidis | CBS 118910 = CPC 12226ET of S. provincialis | Eucalyptus sp. | France | P.W. Crous | KF901988 | KF903507 | KF902692 | KF901649 | KF902391 | KF903269 | KF902973 |
| Sph. myriadea | CBS 124646 = JCM 15565 | Quercus dentata | Japan | K. Tanaka | KF251754 | – | – | – | KF252256 | – | – |
| Staninwardia suttonii | CBS 120061 = CPC 13055ET | Eucalyptus robusta | Australia | B.A. Summerell | KF901874 | KF903517 | KF902693 | KF901552 | KF902392 | KF903270 | KF902974 |
| Stenella araguata | CBS 105.75 = ATCC 24788 = FMC 245ET | Man, tinea nigra | Venezuela | D. Borelli | KF902168 | – | – | – | KF902393 | – | – |
| Suberoteratosphaeria pseudosuberosa | CBS 118911 = CPC 12085ET | Eucalyptus sp. | Uruguay | M.J. Wingfield | KF902144 | KF903508 | – | KF901786 | – | KF903275 | KF902979 |
| Sub. suberosa | CBS 436.92 = CPC 515ET | Eucalyptus dunnii | Brazil | M.J. Wingfield | KF901949 | KF903586 | – | KF901623 | KF902404 | KF903282 | – |
| CPC 13090 | Eucalyptus agglomerata | Australia: New South Wales | A.J. Carnegie | KF902117 | KF903633 | – | KF901762 | KF902403 | KF903281 | – | |
| CPC 13091 | Eucalyptus dunnii | Australia: New South Wales | A.J. Carnegie | KF901875 | KF903634 | – | KF901553 | KF902398 | KF903276 | – | |
| CPC 13104 | Eucalyptus dunnii | Australia: New South Wales | A.J. Carnegie | KF901878 | KF903636 | – | KF901556 | KF902401 | KF903279 | – | |
| CPC 13106 | Eucalyptus argophloia | Australia: New South Wales | A.J. Carnegie | KF901876 | KF903637 | – | KF901554 | KF902399 | KF903277 | – | |
| CPC 13111 | Eucalyptus dunnii | Australia: New South Wales | A.J. Carnegie | KF901877 | KF903638 | – | KF901555 | KF902400 | KF903278 | – | |
| Sub. xenosuberosa | CBS 134747 = CPC 13093ET | Eucalyptus molucana | Australia: Queensland | A.J. Carnegie | KF901879 | KF903584 | – | KF901557 | KF902402 | KF903280 | KF902980 |
| Teratosphaeria agapanthi | CBS 129064 = CPC 18332 | Agapanthus umbellatus | Portugal | P.W. Crous | KF902036 | – | – | – | KF902406 | – | – |
| Ter. alboconidia | CBS 125004 = CPC 14598ET | Eucalyptus miniata | Australia: Northern Territory | B.A. Summerell | KF901881 | KF903573 | – | KF901558 | – | KF903283 | KF902981 |
| Ter. alcornii | CBS 121100 = CPC 13384EET | Corymbia variegata | Australia: New South Wales | G. Price | KF901882 | KF903646 | KF902698 | KF901559 | KF902407 | – | KF902982 |
| Ter. angophorae | CBS 120493 = DAR 77452ET | Angophora floribunda | Australia: New South Wales | A.J. Carnegie | KF901883 | KF903523 | KF902699 | KF901560 | KF902408 | – | KF902983 |
| Ter. aurantia | CBS 125243 = MUCC 668ET | Eucalyptus grandis | Australia: Queensland | G. Whyte | KF901884 | KF903578 | KF902700 | KF901561 | KF902409 | KF903284 | KF902984 |
| Ter. australiensis | CBS 124580 = MUCC 695 | Corymbia sp. | Australia: Western Australia | G.E.St.J. Hardy | KF901885 | KF903553 | KF902701 | KF901562 | KF902410 | KF903285 | KF902985 |
| CBS 125244 = MUCC 731 | Eucalyptus ficifolia | Australia | V. Andjic | KF901886 | KF903579 | KF902702 | KF901563 | KF902411 | KF903286 | KF902986 | |
| Ter. biformis | CBS 124578 = MUCC 693ET | Eucalyptus globulus | Australia: Queensland | G. Whyte | KF901887 | KF903551 | KF902703 | KF901564 | KF902412 | KF903287 | KF902987 |
| Ter. blakelyi | CBS 120089 = CPC 12837ET | Eucalyptus blakelyi | Australia: New South Wales | B.A. Summerell | KF901888 | KF903518 | KF902704 | KF901565 | KF902413 | KF903288 | KF902988 |
| Ter. callophylla | CBS 124584 = MUCC 700ET | Corymbia sp. | Australia: Western Australia | K. Taylor | KF901889 | KF903557 | KF902705 | KF901566 | KF902414 | KF903289 | – |
| Ter. capensis | CBS 130602ET | Protea sp. | South Africa | P.W. Crous | JN712569 | – | – | – | – | – | – |
| Ter. complicata | CBS 125216 = CPC 14535ET | Eucalyptus miniata leaf litter | Australia: Northern Territory | B.A. Summerell | KF901890 | – | – | – | KF902416 | – | – |
| CPC 14535 | Eucalyptus miniata leaf litter | Australia: Northern Territory | B.A. Summerell | KF902139 | KF903672 | KF902706 | KF901781 | KF902415 | KF903290 | KF902989 | |
| Ter. considenianae | CBS 120087 = CPC 12840ET | Eucalyptus consideniana | Australia: New South Wales | B.A. Summerell | KF937238 | – | – | – | KF937272 | – | – |
| CPC 13032 | Eucalyptus sp. | Australia: New South Wales | B.A. Summerell | KF901891 | KF903632 | KF902707 | KF901567 | KF902417 | KF903291 | KF902990 | |
| CPC 14057 | Eucalyptus stellulata | Australia: New South Wales | B.A. Summerell | KF901892 | KF903670 | KF902708 | KF901568 | KF902418 | KF903292 | KF902991 | |
| Ter. corymbiae | CBS 120496 = DAR 77446 | Corymbia maculata | Australia: New South Wales | A.J. Carnegie | KF937239 | – | – | – | KF937273 | – | – |
| CBS 124988 = CPC 13125 | Corymbia henryi | Australia: New South Wales | A.J. Carnegie | KF901893 | KF903560 | – | KF901569 | KF902419 | KF903293 | KF902992 | |
| Ter. crispata | CBS 130523ET | Eucalyptus bridgesiana | Australia: New South Wales | A.J. Carnegie | KF901880 | – | – | – | KF902405 | – | – |
| Ter. cryptica | CBS 110975 = CMW 3279 = CPC 936 | Eucalyptus globulus | Australia: Victoria | A.J. Carnegie | KF901897 | KF903416 | KF902714 | KF901573 | KF902425 | KF903299 | KF902998 |
| CBS 111663 = CPC 1558 | – | – | – | KF901823 | KF903449 | KF902715 | KF901506 | KF902426 | KF903300 | KF902999 | |
| CBS 111679 = CPC 1576 | Eucalyptus nitens | Australia: Tasmania | M.J. Wingfield | KF902037 | KF903450 | KF902711 | KF901691 | KF902422 | KF903296 | KF902995 | |
| CPC 12415 | Eucalyptus globulus | Australia: Victoria | I.W. Smith | KF902118 | KF903616 | KF902709 | KF901763 | KF902420 | KF903294 | KF902993 | |
| CPC 12424 | Eucalyptus globulus | Australia: Victoria | I.W. Smith | KF901895 | KF903617 | KF902712 | KF901571 | KF902423 | KF903297 | KF902996 | |
| CPC 12559 | Eucalyptus nitens | Australia: Tasmania | C. Mohammed | KF901894 | KF903620 | KF902710 | KF901570 | KF902421 | KF903295 | KF902994 | |
| CPC 13839 | Eucalyptus globulus | Australia | I.W. Smith | KF901896 | KF903667 | KF902713 | KF901572 | KF902424 | KF903298 | KF902997 | |
| Ter. destructans | CBS 111369 = CPC 1366ET | Eucalyptus grandis | Indonesia | M.J. Wingfield | EU019287 | – | – | – | KF937274 | – | – |
| CBS 111370 = CPC 1368ET | Eucalyptus grandis | Indonesia | M.J. Wingfield | KF901898 | KF903447 | KF902716 | KF901574 | KF902427 | KF903301 | KF903000 | |
| Ter. dimorpha | CBS 120085 = CPC 12798 | Eucalyptus nitens | Australia: New South Wales | A.J. Carnegie | KF937240 | – | – | – | KF937275 | – | – |
| CBS 124051 = CPC 14132 | Eucalyptus caesia | Australia: New South Wales | B.A. Summerell | KF901899 | KF903546 | KF902717 | KF901575 | KF902428 | KF903302 | KF903001 | |
| Ter. eucalypti | CBS 111692 = CMW 14910 = CPC 1582 | Eucalyptus sp. | New Zealand | M.J. Wingfield | KF902119 | KF903452 | KF902719 | – | – | KF903304 | – |
| CPC 12552 | Eucalyptus nitens | Australia: Tasmania | C. Mohammed | KF901900 | KF903619 | KF902718 | KF901576 | KF902429 | KF903303 | KF903002 | |
| Ter. fibrillosa | CBS 121707 = CPC 13960EET | Protea sp. | South Africa | P.W. Crous & L. Mostert | KF902075 | – | – | KF901728 | – | KF903305 | KF903003 |
| Ter. fimbriata | CBS 120736 = CPC 13324ET | Corymbia sp. | Australia: Queensland | P.W. Crous | KF901901 | KF903529 | KF902720 | KF901577 | KF902430 | KF903306 | KF903004 |
| CBS 120893 = CPC 13321 | Corymbia sp. | Australia: Queensland | P.W. Crous | KF901902 | KF903533 | KF902721 | KF901578 | KF902431 | KF903307 | KF903005 | |
| CPC 13321 | Corymbia sp. | Australia | P.W. Crous | KF901903 | KF903644 | KF902722 | KF901579 | KF902432 | KF903308 | KF903006 | |
| Ter. foliensis | CBS 124581 = MUCC 670ET | Eucalyptus globulus | Australia: New South Wales | S. Collins | KF901904 | KF903554 | KF902725 | KF901580 | KF902435 | KF903311 | KF903009 |
| Ter. gauchensis | CBS 119465 = CMW 17545 | Eucalyptus grandis | Uruguay | M.J. Wingfield | KF902145 | KF903509 | KF902726 | KF901787 | KF902436 | KF903312 | KF903010 |
| CBS 119468 = CMW 17558 | Eucalyptus grandis | Uruguay | M.J. Wingfield | KF902146 | KF903510 | KF902727 | KF901788 | KF902437 | KF903313 | KF903011 | |
| CBS 120303 = CMW 17331ET | Eucalyptus grandis | Uruguay | M.J. Wingfield | KF902148 | KF903521 | KF902729 | KF901790 | KF902439 | KF903315 | KF903013 | |
| CBS 120304 = CMW 17332ET | Eucalyptus grandis | Uruguay | M.J. Wingfield | KF902147 | KF903522 | KF902728 | KF901789 | KF902438 | KF903314 | KF903012 | |
| Ter. hortaea | CBS 124156 = CPC 15716ET | Eucalyptus camaldulensis | Madagascar | M.J. Wingfield | KF902016 | KF903550 | KF902730 | KF901674 | KF902440 | KF903316 | KF903014 |
| Ter. juvenalis | CBS 110906 = CMW 13347 = CPC 40ET | Eucalyptus cladocalyx | South Africa | P.W. Crous | KF902077 | KF903409 | – | KF901730 | – | – | – |
| CBS 111149 = CPC 23 | Eucalyptus cladocalyx | South Africa | P.W. Crous | KF902012 | KF903429 | KF902731 | KF901670 | KF902441 | KF903317 | KF903015 | |
| CBS 116427 = CPC 10941 | Eucalyptus cladocalyx | South Africa | P.W. Crous | KF902076 | KF903485 | KF902732 | KF901729 | KF902442 | KF903318 | KF903016 | |
| Ter. knoxdaviesii | CPC 14905 | Protea sp. | South Africa | P.W. Crous | EU707866 | – | – | – | – | – | – |
| CBS 122898 = CPC 14960ET | Protea sp. | South Africa | P.W. Crous | EU707865 | – | – | – | – | – | – | |
| Ter. macowanii | CBS 122901 = CPC 13899EET | Protea nitida | South Africa | P.W. Crous & L. Mostert | KF937241 | – | – | – | KF937276 | – | – |
| Ter. majorizuluensis | CBS 120040 = CPC 12712ET | Eucalyptus botryoides | Australia: New South Wales | B.A. Summerell | KF901905 | KF903516 | KF902733 | KF901581 | KF902443 | KF903319 | KF903017 |
| Ter. mareebensis | CBS 129529 = CPC 17272ET | Eucalyptus alba | Australia: Queensland | P.W. Crous & R.G. Shivas | KF901906 | KF903581 | KF902734 | KF901582 | KF902444 | KF903320 | KF903018 |
| Ter. maxii | CBS 112496 = CPC 3322 | Protea sp. | Australia: New South Wales | P.W. Crous & B. Summerell | KF937242 | – | – | – | KF937277 | – | – |
| CBS 120137 = CPC 12805ET | Protea repens | South Africa | M. & P.W. Crous | KF937243 | – | – | – | KF937278 | – | – | |
| Ter. mexicana | CBS 110502 = CMW 14461 | Eucalyptus globulus | Australia: Western Australia | A. Maxwell | KF902176 | KF903397 | KF902735 | KF901812 | KF902445 | KF903321 | – |
| Ter. micromaculata | CBS 124582 = MUCC 647ET | Eucalyptus globulus | Australia: Queensland | G. Whyte | KF901907 | KF903555 | – | KF901583 | KF902446 | KF903322 | KF903019 |
| Ter. miniata | CBS 125006 = CPC 14514ET | Eucalyptus miniata leaf litter | Australia: Northern Territory | B.A. Summerell | KF901908 | KF903574 | KF902736 | KF901584 | KF902447 | KF903323 | KF903020 |
| CPC 14514 | Eucalyptus miniata leaf litter | Australia: Northern Territory | B.A. Summerell | KF937244 | – | – | – | KF937279 | – | – | |
| Ter. molleriana | CBS 110499 = CMW 14180ET of Mycosphaerella ambiphylla | Eucalyptus globulus | Australia: Western Australia | A. Maxwell | KF901910 | KF903394 | KF902743 | KF901586 | KF902454 | KF903330 | KF903027 |
| CBS 111164 = CMW 4940 = CPC 1214ET of M. molleriana | Eucalyptus globulus | Portugal | S. McCrae | KF902038 | KF903431 | KF902737 | KF901692 | KF902448 | KF903324 | KF903021 | |
| CBS 111165 = CPC 1215ET | Eucalyptus globulus | Portugal | S. McCrae | KF902039 | KF903432 | KF902738 | KF901693 | KF902449 | KF903325 | KF903022 | |
| CBS 117924 = CMW 11588 | Eucalyptus globulus | Australia: Tasmania | – | KF902078 | KF903486 | KF902739 | KF901731 | KF902450 | KF903326 | KF903023 | |
| CBS 117925 = CMW 11559 | Eucalyptus globulus | Australia | – | KF902121 | KF903487 | KF902744 | KF901765 | KF902455 | KF903331 | KF903028 | |
| CBS 117926 = CMW 11563 | Eucalyptus globulus | Australia | – | KF902122 | KF903488 | KF902745 | KF901766 | KF902456 | KF903332 | KF903029 | |
| CBS 117927 = CMW 11564 | Eucalyptus globulus | Australia: Tasmania | – | KF902123 | KF903489 | KF902746 | KF901767 | KF902457 | KF903333 | KF903030 | |
| CBS 118359 = CMW 11560 | Eucalyptus globulus | Australia: Tasmania | – | KF902120 | KF903490 | KF902740 | KF901764 | KF902451 | KF903327 | KF903024 | |
| CBS 120746 = CPC 13398EET of T. molleriana | Eucalyptus sp. | Portugal | P.W. Crous & A.J.L. Phillips | – | – | – | EF394844 | – | – | – | |
| CBS 122905 = CMW 2732 = CPC 355ET of T. xenocryptica | Eucalyptus sp. | Chile | M.J. Wingfield | KF901959 | KF903540 | KF902741 | KF901626 | KF902452 | KF903328 | KF903025 | |
| CPC 12232 | Eucalyptus globulus | Portugal | A.J.L. Phillips | KF901909 | KF903609 | KF902742 | KF901585 | KF902453 | KF903329 | KF903026 | |
| Ter. multiseptata | CBS 121312 = DAR 77438ET | Angophora subvelutia | Australia: New South Wales | A.J. Carnegie | KF901911 | KF903537 | KF902747 | KF901587 | KF902458 | KF903334 | KF903031 |
| Ter. nubilosa | CBS 116005 = CMW 3282 = CPC 937 | Eucalyptus globulus | Australia: Victoria | A.J. Carnegie | KF902031 | KF903479 | KF902749 | KF901686 | KF902460 | KF903336 | KF903033 |
| CPC 11879 | Eucalyptus sp. | Portugal | A.J.L. Phillips | KF902040 | KF903606 | KF902750 | KF901694 | KF902461 | KF903337 | KF903034 | |
| CPC 12235 | Eucalyptus globulus | Portugal | A.J.L. Phillips | KF902041 | KF903610 | KF902751 | KF901695 | KF902462 | KF903338 | KF903035 | |
| CPC 12243 | Eucalyptus globulus | Portugal | A.J.L. Phillips | KF902042 | KF903611 | KF902752 | KF901696 | KF902463 | KF903339 | KF903036 | |
| CPC 12830 | Eucalyptus globulus | Portugal | A.J.L. Phillips | KF902043 | KF903626 | KF902753 | KF901697 | KF902464 | KF903340 | KF903037 | |
| CPC 13452 | Eucalyptus sp. | Portugal | P.W. Crous | KF902044 | KF903648 | KF902754 | KF901698 | KF902465 | KF903341 | KF903038 | |
| CPC 13825 | Eucalyptus globulus | Australia | I.W. Smith | KF901912 | KF903662 | KF902755 | KF901588 | KF902466 | KF903342 | KF903039 | |
| CPC 13828 | Eucalyptus globulus | Australia | I.W. Smith | KF901913 | KF903663 | KF902756 | KF901589 | KF902467 | KF903343 | KF903040 | |
| CPC 13835 | Eucalyptus globulus | Australia | I.W. Smith | KF902169 | KF903666 | KF902748 | KF901807 | KF902459 | KF903335 | KF903032 | |
| CPC 13844 | Eucalyptus globulus | Australia | I.W. Smith | KF901914 | KF903668 | KF902757 | KF901590 | KF902468 | KF903344 | KF903041 | |
| Ter. ovata | CBS 124052 = CPC 14632 | Eucalyptus phoenicea | Australia: Northern Territory | B.A. Summerell | KF901915 | KF903547 | – | KF901591 | KF902469 | KF903345 | KF903042 |
| Ter. pluritubularis | CBS 118508 = CPC 11697ET | Eucalyptus globulus | Spain | J.P. Mansilla | KF902101 | KF903504 | KF902758 | KF901748 | KF902470 | KF903346 | KF903043 |
| Ter. profusa | CBS 125007 = CPC 12821ET | Eucalyptus nitens | Australia | A.J. Carnegie | KF901916 | – | KF902759 | KF901592 | KF902471 | KF903347 | KF903044 |
| CPC 12821 | Eucalyptus nitens | Australia | A.J. Carnegie | KF937245 | – | – | – | KF937280 | – | – | |
| Ter. proteae-arboreae | CPC 14963 | Protea sp. | South Africa | P.W. & M. Crous | KF937246 | – | – | – | KF937281 | – | – |
| Ter. pseudocryptica | CBS 118504 = CPC 11267ET | Eucalyptus sp. | New Zealand | J.A. Stalpers | KF902032 | KF903598 | KF902760 | KF901687 | KF902472 | KF903348 | KF903045 |
| CPC 11264 | Corymbia henryi | Australia | A.J. Carnegie | KF901856 | KF903640 | KF902651 | KF901534 | KF902343 | – | KF902929 | |
| Ter. pseudoeucalypti | CBS 124577 = MUCC 607ET | Eucalyptus grandis × E. ca-maldulensis | Australia: Queensland | G.S. Pegg | KF901917 | – | KF902761 | KF901593 | KF902473 | KF903349 | KF903046 |
| Ter. pseudonubilosa | CPC 13831 | Eucalyptus globulus | Australia | I.W. Smith | KF901918 | KF903664 | KF902762 | KF901594 | KF902474 | KF903350 | KF903047 |
| CPC 13833 | Eucalyptus globulus | Australia | I.W. Smith | KF901919 | KF903665 | KF902763 | KF901595 | KF902475 | KF903351 | KF903048 | |
| Ter. rubidae | CBS 124579 = MUCC 658ET of T. rubidae | Corymbia calophylla | Australia: Western Australia | P.A. Barber | KF901920 | KF903552 | KF902764 | KF901596 | KF902476 | KF903352 | KF903049 |
| Ter. stellenboschiana | CBS 124989 = CPC 13767 | Eucalyptus punctata | South Africa | P.W. Crous | KF902079 | KF903561 | KF902767 | KF901732 | KF902486 | KF903355 | KF903052 |
| CBS 125215 = CPC 13764 | Eucalyptus punctata | South Africa | P.W. Crous | KF937247 | – | – | – | KF937282 | – | – | |
| CBS 125215 | Eucalyptus punctata | South Africa | P.W. Crous | KF902080 | KF903577 | KF902768 | KF901733 | KF902487 | KF903356 | KF903053 | |
| CPC 12283 | Eucalyptus sp. | France: Corsica | J. Dijksterhuis | KF901981 | KF903613 | KF902766 | KF901646 | KF902485 | KF903354 | KF903051 | |
| Ter. suttonii | CBS 110907 = CPC 63 | Eucalyptus grandis | South Africa | P.W. Crous | KF937248 | – | – | – | KF937283 | – | – |
| CBS 119973 = CMW 23439ET of Mycosphaerella obscuris | Eucalyptus pellita | Vietnam | T.I. Burgess | KF902142 | KF903513 | KF902771 | KF901784 | KF902489 | KF903359 | KF903055 | |
| CPC 12218 | Eucalyptus sp. | Indonesia | M.J. Wingfield | KF902003 | KF903608 | KF902769 | KF901664 | KF902488 | KF903357 | KF903054 | |
| CPC 12352 | Eucalyptus sp. | USA: Hawaii | W. Gams | KF902162 | – | KF902770 | – | – | KF903358 | – | |
| Ter. syncarpiae | CBS 121160 = DAR 77433ET | Syncarpia glomulifera | Australia: New South Wales | A.J. Carnegie & M.J. Wingfield | KF901922 | KF903536 | KF902772 | KF901598 | KF902490 | KF903360 | KF903056 |
| Ter. tinara | CBS 124583 = MUCC 666ET | Corymbia sp. | Australia: Queensland | T.I. Burgess | KF901923 | KF903556 | KF902773 | KF901599 | KF902491 | – | KF903057 |
| Ter. toledana | CBS 113313 = CMW 14457ET | Eucalyptus sp. | Spain | P.W. Crous & G. Bills | KF902081 | KF903464 | KF902774 | KF901734 | KF902492 | KF903361 | KF903058 |
| CBS 115513 = CPC 10840 | Eucalyptus sp. | Spain | P.W. Crous & G. Bills | KF901924 | KF903475 | KF902775 | KF901600 | KF902493 | KF903362 | KF903059 | |
| Ter. veloci | CBS 124061 = CPC 14602ET | Eucalyptus miniata | Australia: Northern Territory | B.A. Summerell | KF937249 | – | – | – | KF937284 | – | – |
| CPC 14600 | Eucalyptus miniata | Australia: Northern Territory | B.A. Summerell | KF901925 | KF903673 | KF902776 | KF901601 | – | KF903363 | KF903060 | |
| Ter. verrucosa | CBS 113621 = CPC 42ET | Eucalyptus cladocalyx | South Africa | P.W. Crous | KF901980 | KF903465 | KF902778 | KF901645 | KF902495 | KF903365 | KF903062 |
| CPC 12949 | Eucalyptus sp. | South Africa | P.W. Crous | KF902124 | KF903629 | KF902777 | KF901768 | KF902494 | KF903364 | KF903061 | |
| Ter. viscidus | CBS 121157 = MUCC 453ET | Eucalyptus grandis | Australia: Queensland | T.I. Burgess, G.E.St.J Hardy, A.J. Carnegie & G. Pegg | KF901927 | – | – | – | – | KF903367 | – |
| CBS 124992 = CPC 13306 | Eucalyptus sp. | Australia: Queensland | B.A. Summerell & P.W. Crous | KF901926 | KF903563 | KF902779 | KF901602 | KF902496 | KF903366 | KF903063 | |
| Ter. zuluensis | CBS 120301 = CMW 17321EET | Eucalyptus grandis | South Africa | M.J. Wingfield | KF902082 | KF903519 | KF902780 | KF901735 | KF902497 | KF903368 | KF903064 |
| CBS 120302 = CMW 17322EET | Eucalyptus grandis | South Africa | M.J. Wingfield | KF902083 | KF903520 | KF902781 | KF901736 | KF902498 | KF903369 | KF903065 | |
| Teratosphaericola pseudoafricana | CBS 111168 = CPC 1231 | Eucalyptus globulus | Zambia | T. Coutinho | KF902045 | KF903435 | KF902782 | KF901699 | KF902499 | KF903370 | KF903066 |
| CBS 114782 = CPC 1230ET | Eucalyptus globulus | Zambia | T. Coutinho | KF902084 | KF903473 | KF902783 | KF901737 | KF902500 | KF903371 | KF903067 | |
| Teratosphaeriopsis pseudoafricana | CBS 111171 = CPC 1261 | Eucalyptus sp. | South Africa | P.W. Crous | KF902085 | KF903436 | KF902784 | KF901738 | KF902501 | KF903372 | KF903068 |
| Teratosphaeriaceae sp. | CBS 117937 = TRN211 | Rock sample | Spain | – | GU323978 | – | – | – | KF310038 | – | – |
| Teratosphaeriaceae sp. | CBS 120744 = CPC 12349 | Eucalyptus sp. | USA: Hawaii | W. Gams | KF902160 | KF903532 | KF902546 | KF901800 | KF902215 | KF903110 | KF902810 |
| Teratosphaeriaceae sp. | CBS 131961 | Ant body | Brazil | A.P.M. Duarte, N.C. Baron & pseudoafricana | KF902172 | – | – | – | KF902478 | – | – |
| Teratosphaeriaceae sp. | CBS 131960 | Ant body | Brazil | A.P.M. Duarte, N.C. Baron & D.A. de Angelis | KF901950 | – | – | – | KF902479 | – | – |
| Teratosphaeriaceae sp. | CBS 131962 | Ant body | Brazil | A.P.M. Duarte, N.C. Baron & D.A. de Angelis | KF901951 | – | – | – | KF902480 | – | – |
| Teratosphaeriaceae sp. | CBS 131963 | Ant body | Brazil | A.P.M. Duarte, N.C. Baron & D.A. de Angelis | KF901952 | – | – | – | KF902481 | – | – |
| Teratosphaeriaceae sp. | CBS 131976 | Ant body | Brazil | A.P.M. Duarte, N.C. Baron & D.A. de Angelis | KF901953 | – | – | – | KF902482 | – | – |
| Teratosphaeriaceae sp. | CBS 131977 | Ant body | Brazil | A.P.M. Duarte, N.C. Baron & D.A. de Angelis | KF901954 | – | – | – | KF902483 | – | – |
| Teratosphaeriaceae sp. | CBS 131979 | Ant body | Brazil | A.P.M. Duarte, N.C. Baron & D.A. de Angelis | KF901955 | – | – | – | KF902484 | – | – |
| Teratosphaeriaceae sp. | CCFEE 5569 | Rock sample | Italy | – | KF310015 | – | – | – | KF310071 | – | – |
| Teratosphaeriaceae sp. | CPC 13680 | Eucalyptus placita | Australia | B.A. Summerell | KF901921 | KF903657 | KF902765 | KF901597 | KF902477 | KF903353 | KF903050 |
| Teratosphaeriaceae sp. | TRN232 | Rock sample | Spain | – | KF310011 | – | – | – | KF310079 | – | – |
| Teratosphaeriaceae sp. | TRN450 | Rock sample | Spain | – | KF937237 | – | – | – | – | – | – |
| Toxicocladosporium irritans | CBS 128777 = CPC 18471ET | Phaenocoma prolifera | South Africa | K. L. & P.W. Crous | JF499868 | – | – | – | KJ564345 | – | – |
| Tox. protearum | CBS 126499 = CPC 15254ET | Protea burchellii | South Africa | F. Roets | HQ599587 | – | – | – | KJ564344 | – | – |
| Tox. rubrigenum | CBS 124158 = CPC 15735ET | Eucalyptus camaldulensis | Madagascar | M. J. Wingfield | FJ790305 | – | – | – | KJ564338 | – | – |
| Tripospermum myrti | CBS 437.68 | Citrus sp. | Java | J.H. van Emden | KF902008 | – | – | – | KF902502 | – | – |
| Undescribed species | CCFEE 5772 | Rock sample | France | D. Tesei | KJ380895 | – | – | – | KJ380901 | – | – |
| Undescribed species | CBS 118301 = TRN138 | Rock sample | Spain | C. Ruibal | GU323974 | – | – | – | KJ564343 | – | – |
| Undescribed species | CBS 118305 = TRN62 | Rock sample | Spain | C. Ruibal | GU323961 | – | – | – | KF310084 | – | – |
| Undescribed species | CPC 16833 | Pinus koraiensis | The Netherlands | W. Quaedvlieg | KJ564329 | – | – | – | KJ564350 | – | – |
| Undescribed species | CPC 16832 | Pinus koraiensis | The Netherlands | W. Quaedvlieg | KJ564330 | – | – | – | – | – | – |
| Undescribed species | CBS 136110 = CCFEE 5764 | Rock sample | Italy | – | KF310028 | – | – | – | – | – | – |
| Uwebraunia australiensis | CBS 120729 = CPC 13282ET | Eucalyptus platyphylla | Australia | P.W. Crous | GQ852588 | – | – | – | KJ564339 | – | – |
| Uwe. commune | CBS 110809 = CPC 830ET | Eucalyptus nitens | South Africa | P.W. Crous | KJ564336 | – | – | – | KJ564351 | – | – |
| Uwe. dekkeri | CPC 13264 | Eucalyptus molucana | Australia | B.A. Summerell | GQ852593 | – | – | – | KJ564340 | – | – |
| Vermiconia foris | CBS 136106 = CCFEE 5459ET | Rock sample | Italy | – | GU250390 | – | – | – | KF310088 | – | – |
| Von. antarctica | CBS 136107 = CCFEE 5488ET | Rock sample | Antarctica | – | KJ564324 | – | – | – | KF310089 | – | – |
| CBS 136108 = CCFEE 5489 | Rock sample | Antarctica | – | GU250395 | – | – | – | – | – | – | |
| Von. flagrans | CBS 118283 = TRN124ET | Rock sample | Spain | C. Ruibal | GU323971 | – | – | – | – | – | – |
| CBS 118284 = TRN104 | Rock sample | Spain | C. Ruibal | KJ564325 | – | – | – | KF310089 | – | – | |
| CBS 118296 = TRN114ET | Rock sample | Spain | C. Ruibal | KF310024 | – | – | – | KF310096 | – | – | |
| Verrucisporota daviesiae | CBS 116002 = VPRI31767 | Daviesia mimosoides (≡ D. cormybosa var. mimosoides) | Australia | V. & R. Beilharz | KF901928 | KF903477 | KF902785 | KF901603 | KF902503 | KF903373 | KF903069 |
| Verr. proteacearum | CBS 116003 = VPRI31812 | Grevillea sp. | Australia | V. Beilharz | KF901929 | KF903478 | – | KF901604 | KF902504 | – | KF903070 |
| Xenomycosphaerella elongata | CBS 120735 = CPC 13378ET | Eucalyptus camaldulensis × urophylla | Venezuela | M.J. Wingfield | KF902170 | KF903528 | KF902786 | KF901808 | KF902505 | KF903374 | KF903071 |
| Xenom. yunnanensis | CBS 119975 = CMW 23443 = MUCC 410 = PAB 05.05 B2ET | Eucalyptus urophylla | China | B. Dell | KF901962 | KF903515 | KF902787 | KF901628 | KF902506 | KF903375 | KF903072 |
| Xenopenidiella rigidophora | CBS 314.95ET | Smilax sp. leaf litter | Cuba | R.F. Castañeda | KF901983 | – | – | – | KF902507 | – | – |
| Xenophacidiella pseudocatenata | CBS 128776 = CPC 18472ET | Phaenocoma prolifera | South Africa | K.L. & P.W. Crous | KF902092 | – | – | – | KF902508 | – | – |
| Xenoteratosphaeria jonkershoekensis | CBS 122897 = CPC 13984EET | Protea sp. | South Africa | P.W. Crous & L. Mostert | KF937250 | – | – | – | KF937285 | – | – |
| Zasmidium aerohyalinosporum | CBS 125011 = CPC 14636ET | Eucalyptus tectifica | Australia | B.A. Summerell | KF901930 | KF903576 | KF902788 | KF901605 | KF902509 | KF903376 | KF903073 |
| Z. anthuriicola | CBS 118742ET | Anthurium sp. | Thailand | C.F. Hill | FJ839662 | – | – | – | KF252287 | – | – |
| Z. citri | CBS 116366 = CPC 10522 = CMW 11730 | Acacia mangium | Thailand | K. Pongpanich | KF902138 | – | – | KF901780 | KF902519 | KF903386 | KF903080 |
| CBS 116426 | Musa sp. | USA: Florida | J. Cavaletto | KF901987 | – | – | KF901648 | KF902520 | KF903387 | KF903081 | |
| CBS 122455 | Citrus sp. | USA: Florida | R.C. Ploetz | KF902156 | – | – | KF901797 | KF902521 | KF903388 | KF903082 | |
| CPC 10522 | Acacia mangium | Thailand | K. Pongpanich | KF902136 | – | – | KF901778 | KF902511 | KF903378 | KF903074 | |
| CPC 13467 | Eucalyptus sp. | Thailand | W. Himaman | KF902137 | KF903650 | – | KF901779 | KF902512 | KF903379 | KF903075 | |
| CPC 15285 | Citrus sp. | USA: Florida | – | KF902150 | – | – | KF901791 | KF902513 | KF903380 | KF903076 | |
| CPC 15289 | Citrus sp. | USA: Florida | – | KF902151 | – | – | KF901792 | KF902514 | KF903381 | – | |
| CPC 15291 | Citrus sp. | USA: Florida | – | KF902152 | KF903676 | – | KF901793 | KF902515 | KF903382 | KF903077 | |
| CPC 15293 | Citrus sp. | USA: Florida | – | KF902153 | – | – | KF901794 | KF902516 | KF903383 | – | |
| CPC 15294 | Citrus sp. | USA: Florida | – | KF902154 | – | – | KF901795 | KF902517 | KF903384 | KF903078 | |
| CPC 15296 | Citrus sp. | USA: Florida | – | KF902155 | – | – | KF901796 | KF902518 | KF903385 | KF903079 | |
| CPC 15300 | Citrus sp. | Indonesia | – | KF902086 | – | – | KF901739 | KF902510 | KF903377 | – | |
| Z. eucalypti | CBS 121101 = CPC 13302ET | Eucalyptus tereticornis | Australia: Queensland | P.W. Crous | KF901931 | KF903642 | – | KF901606 | KF902522 | KF903389 | KF903083 |
| Z. eucalyptorum | CBS 118500 = CPC 11174ET | Eucalyptus sp. | Indonesia | M.J. Wingfield | – | KF903495 | – | KF901652 | KF902203 | KF903101 | – |
| Z. lonicericola | CBS 125008 = CPC 11671EET | Lonicera japonica | South Korea | H.D. Shin | KF902093 | – | – | – | KF902523 | – | – |
| Z. nabiacense | CBS 125010 = CPC 12748ET | Eucalyptus sp. | Australia | A.J. Carnegie | KF901933 | KF903575 | – | KF901608 | KF902525 | KF903391 | KF903085 |
| CPC 12748 | Eucalyptus sp. | Australia | A.J. Carnegie | KF901932 | KF903624 | – | KF901607 | KF902524 | KF903390 | KF903084 | |
| Z. nocoxi | CBS 125009 = CPC 14044ET | Twig debris | USA: Virginia | P.W. Crous | KF902157 | – | – | – | KF902526 | – | – |
| Z. parkii | CBS 387.92 = CPC 353ET | Eucalyptus grandis | Brazil | M.J. Wingfield | KF902143 | KF903585 | KF902789 | KF901785 | – | KF903392 | – |
| Z. pseudoparkii | CBS 110988 = CPC 1090 | Eucalyptus grandis | Colombia | M.J. Wingfield | KF901975 | KF903418 | KF902694 | KF901640 | KF902394 | KF903271 | KF902975 |
| CBS 110999 = CPC 1087ET | Eucalyptus grandis | Colombia | M.J. Wingfield | KF901977 | KF903419 | KF902696 | KF901642 | KF902396 | KF903273 | KF902977 | |
| CBS 111049 = CPC 1089 | Eucalyptus grandis | Colombia | M.J. Wingfield | KF901976 | KF903426 | KF902695 | KF901641 | KF902395 | KF903272 | KF902976 | |
| Z. xenoparkii | CBS 111185 = CPC 1300ET | Eucalyptus grandis | Indonesia | M.J. Wingfield | KF902002 | KF903438 | KF902697 | KF901663 | KF902397 | KF903274 | KF902978 |
| Zymoseptoria verkleyi | CBS 133618 | Poa annua | The Netherlands | S. Videira | KC005802 | – | – | – | KJ564348 | – | – |
1 ATCC: American Type Culture Collection, Virginia, USA; CBS: CBS Fungal Biodiversity Centre, Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; CCFEE: Culture collection from extreme environments of the Dipartimento di Scienze Ambientali, University of Tuscia, Viterbo, Italy; CIRAD: Centre de Coopération Internationale en Recherche Agronomique pour le Développement, UMR-BGPI, Montpellier, France; CMW: Culture collection of the Forestry and Agricultural Biotechnology Institute (FABI) of the University of Pretoria, Pretoria, South Africa; CPC: Collection Pedro Crous, housed at CBS; DAOM: Plant Research Institute, Department of Agriculture (Mycology), Ottawa, Canada; DAR: Plant Pathology Herbarium, Orange Agricultural Institute, Forest Road, Orange. NSW 2800, Australia; MAFF: NIAS Genebank, Microorganism Section, Japan; MUCC: Murdoch University Culture Collection, Murdoch, Australia; NZFS: Forest Research Culture Collection, Private Bag 3020, Rotorua, New Zealand; STE-U: Department of Plant Pathology, University of Stellenbosch, South Africa; TRN: T. Ruibal private collection; VPRI: Victorian Department of Primary Industries, Knoxfield, Australia; X: Working collection of Mahdi Arzanlou.
2 EET: ex-epitype; ET: ex-type.
3 Act: Actin; Btub: β-tubulin; Cal: Calmodulin; EF-1α: Translation elongation factor 1-alpha; ITS: internal transcribed spacer regions of the nrDNA operon; LSU: 28S large subunit of the nrRNA gene; RPB2: RNA polymerase II second largest subunit.
Multi-locus DNA screening
Genomic DNA was extracted from mycelium growing on MEA (Table 1), using the UltraCleanTM Microbial DNA Isolation Kit (Mo Bio Laboratories, Inc., Solana Beach, CA, USA). All strains were screened for seven loci (ITS, LSU, Act, Cal, EF-1α, RPB2 and Btub) using the primer sets listed in Table 2. The PCR amplifications were performed in a total volume of 12.5 μL solution containing 10–20 ng of template DNA, 1× PCR buffer, 0.7 μL DMSO (99.9 %), 2 mM MgCl2, 0.4 μM of each primer, 25 μM of each dNTP and 1.0 U BioTaq DNA polymerase (Bioline GmbH Luckenwalde, Germany). PCR conditions were set as follows: an initial denaturation temperature of 96 °C for 2 min, followed by 40 cycles of denaturation temperature of 96 °C for 45 s, primer annealing at the temperature stated in Table 2, primer extension at 72 °C for 90 s and a final extension step at 72 °C for 2 min. The resulting fragments were sequenced using the PCR primers and the BigDye Terminator Cycle Sequencing Kit v. 3.1 (Applied Biosystems, Foster City, CA, USA). Sequencing reactions were performed as described by Cheewangkoon et al. (2008).
Table 2.
Primer combinations used during this study for generic amplification and sequencing.
| Locus | Primer | Primer sequence 5’ to 3’ | Annealing temperature (°C) | Orientation | Reference |
|---|---|---|---|---|---|
| Translation elongation factor-1α | EF1-728F | CATCGAGAAGTTCGAGAAGG | 52 | Forward | Carbone & Kohn (1999) |
| EF-2 | GGARGTACCAGTSATCATGTT | 52 | Reverse | O’Donnell et al. (1998) | |
| β-tubulin | T1 | AACATGCGTGAGATTGTAAGT | 52 | Forward | O’Donnell & Cigelnik (1997) |
| β-Sandy-R | GCRCGNGGVACRTACTTGTT | 52 | Reverse | Stukenbrock et al. (2012) | |
| RNA polymerase II second largest subunit | fRPB2-5F | GAYGAYMGWGATCAYTTYGG | 49 | Forward | Liu et al. (1999) |
| fRPB2-414R | ACMANNCCCCARTGNGWRTTRTG | 49 | Reverse | Quaedvlieg et al. (2011) | |
| LSU | LSU1Fd | GRATCAGGTAGGRATACCCG | 52 | Forward | Crous et al. (2009a) |
| LR5 | TCCTGAGGGAAACTTCG | 52 | Reverse | Vilgalys & Hester (1990) | |
| ITS | ITS5 | GGAAGTAAAAGTCGTAACAAGG | 52 | Forward | White et al. (1990) |
| ITS4 | TCCTCCGCTTATTGATATGC | 52 | Reverse | White et al. (1990) | |
| Actin | ACT-512F | ATGTGCAAGGCCGGTTTCGC | 52 | Forward | Carbone & Kohn (1999) |
| ACT2Rd | ARRTCRCGDCCRGCCATGTC | 52 | Reverse | Groenewald et al. (2013) | |
| Calmodulin | CAL-235F | TTCAAGGAGGCCTTCTCCCTCTT | 50 | Forward | Quaedvlieg et al. (2012) |
| CAL2Rd | TGRTCNGCCTCDCGGATCATCTC | 50 | Reverse | Groenewald et al. (2013) |
Phylogenetic analysis
An initial alignment of the obtained sequence data was first done using MAFFT v. 7 (http://mafft.cbrc.jp/alignment/server/index.html; Katoh et al. 2002) and whenever indicated, manually improved in BioEdit v. 7.0.5.2 (Hall 1999). To check the congruency of the datasets, a 70 % Neighbour-Joining (NJ) reciprocal bootstrap method with maximum likelihood distance was performed on each individual locus (Mason-Gamer & Kellogg 1996) (resulting trees not shown). Bayesian analyses (critical value for the topological convergence diagnostic set to 0.01) were performed on the five locus (ITS, LSU, RPB2, EF-1α and Btub) TLD (Fig. 1) and MLD (Fig. 2) trees, as well as on the two-locus, Teratosphaeriaceae and families LSU/RPB2 (Fig. 3, 4) concatenated datasets using MrBayes v. 3.2.1 (Ronquist et al. 2011) as described by Crous et al. (2006). Appropriate gene models were selected using MrModeltest v. 2.3 (Nylander 2004) and applied to each gene partition. The substitution models for each locus are listed in Table 3. Staninwardia suttonii (CBS 120061) served as an outgroup for both MLD and TLD five-locus multigene phylogenetic analyses; Aulographina pinorum (CBS 655.86) was used as outgroup for the LSU/RPB2 Teratosphaeriaceae tree and Parastagonospora nodorum (CBS 110109) was used as an outgroup for the families tree.
Fig. 1.
A Bayesian 50 % majority rule consensus tree based on a combined ITS, LSU, RPB2, EF-1α and Btub alignment, containing all isolates associated with Teratosphaeria leaf disease of Eucalyptus available at the CBS. Bayesian posterior probabilities support values for the respective nodes are displayed in the tree. The tree was rooted to Staninwardia suttonii. The scale bar indicates 0.1 expected changes per site.
Fig. 2.
A Bayesian 50 % majority rule consensus tree based on a combined ITS, LSU, RPB2, EF-1α and Act alignment, containing all isolates associated with Mycosphaerella leaf disease of Eucalyptus available at the CBS. Bayesian posterior probabilities support values for the respective nodes are displayed in the tree. The tree was rooted to Staninwardia suttonii. The scale bar indicates 0.1 expected changes per site.
Fig. 3.
A Bayesian 50 % majority rule consensus tree based on the LSU/RPB2 alignment and containing all isolates associated with the Teratosphaeriaceae available at the CBS. Bayesian posterior probabilities support values for the respective nodes are displayed in the tree. The tree was rooted to Aulographina pinorum. The scale bar indicates 0.1 expected changes per site.
Fig. 4.
A Bayesian 50 % majority rule consensus tree based on a LSU/RPB2 alignment and containing isolates that where previously associated with ‘Teratosphaeria 1’ and ‘2’, plus representatives of closely related families, available at the CBS. Bayesian posterior probabilities support values for the respective nodes are displayed in the tree. The tree was rooted to Parastagonospora nodorum. The scale bar indicates 0.2 expected changes per site.
Table 3.
Amplification success, phylogenetic data and the substitution models used in the phylogenetic analyses, per locus.
| Locus | Act | Cal | EF1 | RPB2 | Btub | ITS | LSU |
|---|---|---|---|---|---|---|---|
| Amplification succes (%) | 90 | 84 | 98 | 95 | 97 | 100 | 100 |
| Number of characters | 558 | 593 | 490 | 340 | 306 | 594 | 758 |
| Unique site patterns | 334 | 386 | 388 | 195 | 211 | 334 | 174 |
| Substitution model used | GTR-I-gamma | HKY-I-gamma | HKY-I-gamma | GTR-I-gamma | HKY-I-gamma | GTR-I-gamma | GTR-I-gamma |
Kimura-2-parameter values
The available sequence data from the seven individual loci within the two Teratosphaeriaceae and single Mycosphaerellaceae datasets were individually pooled together and realigned using MAFFT to generate seven single locus alignments. MEGA v. 4.0 (Tamura et al. 2007) was then used to generate both inter- and intra-specific Kimura-2-parameter distance values for these seven datasets using the pair-wise deletion model. Microsoft Excel 2007 was then used to sort these distance values into distribution bins (from distance 0–1 with intervals of 0.05 between bins) and the frequency of entries for each individual bin was subsequently plotted against the Kimura-2-parameter distance of each bin (Fig. 5).
Fig. 5.
The frequency distribution graphs of the Kimura-2-parameter distances (barcoding gaps) for the seven individual gene loci. The grey asterix (*) marks the average interspecific variation per locus while red inverted chevrons (V) mark the average intraspecific variation per locus.
Genealogical concordance phylogenetic species recognition analysis
Phylogenetically related but ambiguous species were analysed separately using the Genealogical Concordance Phylogenetic Species Recognition (GCPSR) model (as described by Taylor et al. 2000) by performing a pairwise homoplasy index (Φw) test. GCPSR is a pragmatic tool for the assessment of species limits, as the concordance of gene genealogies is a valuable method for evaluating the significance of gene flow between groups within an evolutionary timescale (Koufopanou et al. 1997, Geiser et al. 1998, Taylor et al. 2000, Starkey et al. 2007). A Pairwise homoplasy index (PHI) test (Philippe & Bryant 2006) was performed in SplitsTree4 (Huson 1998, Huson & Bryant 2006) (www.splitstree.org) in order to determine the recombination level within phylogenetically closely related species using a five-locus concatenated dataset of closely related species (Fig. 1 and 2, clade A–K). If the pairwise homoplasy index results were below a 0.05 threshold (Φw < 0.05), it was indicative for significant recombination present in the dataset. The relationships between these eleven, closely related, species groups were visualised by constructing splits graphs (Fig. 6) from the five-locus concatenated datasets, using both the LogDet transformation and splits decomposition options.
Fig. 6.
The results of the pairwise homoplasy index (PHI) test of closely related species using both LogDet transformation and splits decomposition. PHI test results (Φw) < 0.05 indicate significant recombination within the dataset.
Morphology
Morphological descriptions were made on slide preparations mounted in clear lactic acid from colonies sporulating on MEA, PDA and OA (noted in taxonomic descriptions). Observations were made with a Zeiss V20 Discovery stereo-microscope and with a Zeiss Axio Imager 2 light microscope using differential interference contrast (DIC) illumination and a MRc5 camera and ZEN imaging software. Colony characters and pigment production were noted after 1 mo of growth on MEA, PDA and OA incubated at 25 °C. Colony colours (surface and reverse) were rated according to the colour charts of Rayner (1970). Sequences derived in this study were lodged at GenBank, the alignment in TreeBASE (www.treebase.org) and taxonomic novelties in MycoBank (www.MycoBank.org; Crous et al. 2004a).
RESULTS
Amplification rate of test loci
The amplification success scores of the seven test loci varied from 100 % for LSU and ITS to 84 % for Cal. The remaining four test loci (Act, RPB2, Btub and EF-1α) produced PCR success scores of 90, 95, 97 and 98 %, respectively (Table 3).
Congruency testing
The results of the congruency test (trees not shown) showed that the seven gene regions were incongruent in both the MLD and TLD trees. In the TLD Teratosphaeriaceae tree (Fig. 1), the Act and Cal loci were incongruent with the other five loci, while in the MLD Mycosphaerellaceae tree (Fig. 2), the Btub and Cal loci were incongruent with the other five loci. In both these datasets, the terminal clades representing genera were the same for all gene regions, however the higher order clustering deviated for the incongruent loci. For this reason, the conflicting loci were not included in the published trees.
Kimura-2-parameter values
The Kimura-2-parameter (K2P) distribution graphs (Fig. 5) visualise the inter- and intraspecific distances per locus corresponding to the barcoding gap (Hebert et al. 2003). A useful barcoding locus should have no overlap between inter- and intraspecific K2P distances. The individual test loci showed varying degrees of overlap in their K2P distribution graphs. In this dataset, both ITS and LSU have a higher K2P overlap than the other five test loci suggesting they are more conserved making them less suitable to serve as a reliable identification locus for MLD and TLD pathogens across the whole scale of tested sequences. Of the remaining five loci (Btub, Act, RPB2, EF-1α and Cal), Btub, EF-1α and RPB2 have the lowest K2P overlap. Although these latter loci are less conserved, they show greater natural variation between different species than the other four loci.
Phylogenetic results
Based on the phylogenetic data (Fig. 1, 2, 3, 4) generated during this study, we were able to make a start at delineating the Teratosphaeriaceae. Recognised clades, as well as novel species, genera and families are described and discussed in the Taxonomy section below.
The four datasets consisted of 2 468 characters for the TLD tree (753 characters for LSU, 485 for EF-1α, 589 for ITS, 301 for Btub and 340 for RPB2), 2 950 characters for the MLD tree (563 characters for Act, 752 for LSU, 573 for EF-1α, 728 for ITS and 334 for RPB2), 1 129 characters for the Teratosphaeriaceae tree (817 characters for LSU and 312 for RPB2) and 956 characters for the families tree (688 for LSU and 268 for RPB2).
The respective alignments included 1 361 parsimony-informative characters for the TLD tree (223 for LSU, 388 for EF-1α, 334 for ITS, 221 for Btub and 195 for RPB2), 1 398 parsimony-informative characters for the MLD tree (293 for Act, 179 for LSU, 382 for EF-1α, 355 for ITS and 189 for RPB2), 647 parsimony-informative characters for the Teratosphaeriaceae tree (457 for LSU and 190 for RPB2) and 511 parsimony-informative characters for the families tree (287 for LSU and 224 for RPB2).
After topological convergence of the Bayesian runs at 0.01, the following numbers of trees where generated and subsequently sampled (using a burn in fraction of 0.25 and indicated after the slash) in order to generate the three Bayesian phylogenies, 960/720 for TLD, 1102/828 for MLD, 76126/57096 for Teratosphaeriaceae and 9172/6879 for the families tree. The resulting phylogenetic trees of all three individual combined datasets showed consistent clustering of all MLD and TLD taxa over all four trees, and these results are treated below. There were some problems with the clustering position of the Piedraiaceae, and this issue is addressed in the Discussion.
TAXONOMY
Extremaceae
Extremaceae Quaedvlieg & Crous,fam. nov. — MycoBank MB808049
Type genus. Extremus Quaedvlieg & Crous.
Asexual morphs variable, filamentous, lichenicolous or yeast-like. Conidiophores pigmented, solitary to sporodochial, proliferating sympodially, or with a terminal rachis that can be subdenticulate. Conidia brown, solitary or in short mostly unbranched chains, subcylindrical to narrowly fusoid-ellipsoidal or obclavate, rarely with 1–2 transverse septa, frequently with mucoid sheath; hila not to slightly darkened, somewhat thickened and refractive or not.
Notes — Members of Extremaceae occur in extreme habitats, and are ecologically highly diverse, ranging from lichenocolous to epiphyllous, acidophilic, rock inhabiting, endophytic, saprobic or plant pathogenic, representing part of ‘Teratosphaeriaceae 2’ (now Neodevriesiaceae and Extremaceae) sensu Ruibal et al. (2009).
Extremus Quaedvlieg & Crous, gen. nov. — MycoBank MB808050
Type species. Extremus adstrictus (Egidi & Onofri) Quaedvlieg & Crous.
Etymology. Named after its ecologically extreme, rock-inhabiting habitat.
Hyphomycetous, rock-inhabiting. Colonies with brown, branched, thick-walled, septate hyphae. Conidiogenous cells integrated in hyphal chains, brown, subcylindrical to ellipsoid, smooth to rough, proliferating sympodially. Conidia medium brown, smooth to rough, subcylindrical to ellipsoid, thick-walled, in chains, with or without darkened median septa, at times with oblique septa; hila not to slightly darkened. Sexual morph unknown.
Notes — Extremus is introduced as novel genus to accommodate fungal species isolated from rocks. Presently its morphology is only known from culture, where it appears to be extremely slow-growing, forming brown hyphae with disarticulating conidial chains. It clusters as a sister clade that are devriesia-like in morphology, namely D. americana (isolated from air, USA) and D. compacta (isolated from rocks, Spain), suggesting that these rock-inhabiting species could be aerially dispersed.
Extremus adstrictus (Egidi & Onofri) Quaedvlieg & Crous, comb. nov. — MycoBank MB808051
Basionym. Devriesia adstricta Egidi & Onofri, Fung. Diversity 65: 150. 2014.
Specimen examined. SPAIN, Mallorca, from rock, holotype CBS 118292 = TRN96, preserved in liquid nitrogen and in dried condition.
Extremus antarcticus (Selbmann & de Hoog) Quaedvlieg & Crous, comb. nov. — MycoBank MB808052
Basionym. Devriesia antarctica Selbmann & de Hoog, Fung. Diversity 65: 150. 2014.
Specimen examined. ANTARCTICA, Linnaeus Terrace, from rock, holotype CBS 136103 = CCFEE 451, preserved in liquid nitrogen and in dried condition.
Incertae sedis (Capnodiales)
Mucomycosphaerella Quaedvlieg & Crous, gen. nov. — MycoBank MB807791
Type species. Mucomycosphaerella eurypotami (Kohlm., Volkm.-Kohlm. & O.E. Erikss.) Quaedvlieg & Crous.
Etymology. Resembling the genus Mycosphaerella, except ascospores have mucoid sheaths.
Foliicolous. Ascomata pseudothecial, depressed ellipsoidal, immersed becoming erumpent, with central ostiole lacking periphyses, brown, dark brown at the ostiole, solitary or in clusters of two or more joined together; wall of textura angularis, consisting of 4–6 layers at the top, but only 2–3 layers at the sides and bottom. Hamathecium sparse, composed of branched and anastomosing septate pseudoparaphyses embedded in a gelatinous matrix. Asci ellipsoidal to ovoid, 8-spored, indistinctly pedicellate, bitunicate, fissitunicate, thick-walled, with a thin, tough ectotunica and a thick gelatinous, expanding endotunica. Ascospores bi- to triseriate, elongate ellipsoidal, sometimes inequilateral, 1-septate, with one additional pseudoseptum in each cell, slightly constricted at the septum, hyaline, guttulate, surrounded by a gelatinous sheath that is constricted around the septum.
Mucomycosphaerella eurypotami (Kohlm., Volkm.-Kohlm. & O.E. Erikss.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807792
Basionym. Mycosphaerella eurypotami Kohlm., Volkm.-Kohlm. & O.E. Erikss., Bot. Mar. 42, 6: 505. 1999.
Specimen examined. USA, North Carolina, Virginia, Carteret County, Broad Creek, N34°43', W76°55'07", on senescent leaves of Juncus roemerianus, 21 May 1996, B. & J. Kohlmeyer (holotype JK5586 in IMS, culture ex-type JK5586J).
Notes — Mucomycosphaerella is distinguished from Mycosphaerella s.str. by having well developed, persistent mucoid sheaths around its ascospores, and the absence of Ramularia asexual states. Its ascomata are depressed, and have a pale, thin-walled lower half, and a hamathecium of loosely branched, anastomosing hyphae in a hymenial gel, with hyaline ascospores (Kohlmeyer et al. 1999). Mucomycosphaerella eurypotami was included in Mycosphaerella as a temporary measure, until a formal revision of the genus (Kohlmeyer et al. 1999), which has been ongoing since the epitypification of the type species (Verkley et al. 2004), and the segregation of various allied genera and families (Crous et al. 2007b, 2009b).
The genus Mucomycosphaerella appears to represent a distinct family in the Capnodiales, sister to the Schizothyriaceae. More collections of additional taxa are needed to determine the extent of morphological variation before a formal family can be introduced.
Mycosphaerellaceae
Neopenidiella Quaedvlieg & Crous, gen. nov. — MycoBank MB807778
Type species. Neopenidiella nectandrae (Crous, U. Braun & R.F. Castañeda) Quaedvlieg & Crous.
Etymology. Named after its morphological similarity to the genus Penidiella.
Foliicolous. Conidiophores erect, straight, filiform, pluriseptate throughout, brown, darker below and paler above, thin-walled, smooth, apex penicillate, terminal cell of the conidiophore with short denticle-like loci giving rise to sets of conidiogenous cells or ramoconidia that then form a sequence of new sets of ramoconidia at different levels. Conidiogenous loci terminal or subterminal, usually 1–3(–4), subdenticulate, conical, apically truncate, mostly unthickened, slightly darkened-refractive. Ramoconidia with truncate base, barely or distinctly attenuated at the truncate base, aseptate, with 2–3(–4) subdenticulate hila at the apex, subcylindrical, pale olivaceous to olivaceous-brown or brown, thin-walled, smooth to faintly verruculose. Conidia in long acropetal chains, narrowly ellipsoid-ovoid, fusiform to cylindrical aseptate, pale olivaceous to olivaceous-brown or brown, thin-walled, smooth to faintly rough-walled; hila unthickened or almost so, slightly darkened-refractive.
Neopenidiella nectandrae (Crous, U. Braun & R.F. Castañeda) Quaedvlieg & Crous, comb. nov. — MycoBank MB807779
Basionym. Penidiella nectandrae Crous, U. Braun & R.F. Castañeda, Stud. Mycol. 58: 20. 2007.
Specimen examined. CUBA, Matanzas, San Miguel de los Baños, isolated from living leaves of Nectandra coriacea (Lauraceae), 24 Jan. 1987, R.F. Castañeda & G. Arnold, holotype INIFAT C87/45, culture ex-type CBS 734.87, and HAL 2018F.
Notes — Similar to Penidiella, but distinct in that conidiophores are long and filiform, ending in a subdenticulate apical cell that gives rise to sets of penicillate conidiogenous cells or ramoconidia. Ramoconidia and conidia are aseptate, pale olivaceous and consistently narrow. Penidiella has penicillate conidiophores with well-developed apical branches, and wider, 0–1-septate ramoconidia and conidia.
Amycosphaerella Quaedvlieg & Crous, gen. nov. — MycoBank MB807780
Type species. Amycosphaerellaafricana (Crous & M.J. Wingf.) Quaedvlieg & Crous.
Etymology. Named after the genus Mycosphaerella, to which it is morphologically similar.
Foliicolous, plant pathogenic Ascomata pseudothecial, amphigenous, solitary, black, subepidermal, globose, with central apical ostioles, becoming papillate; walls of 2–3 layers of medium brown textura angularis, subhymenium of 1–2 layers of hyaline cells. Asci obovoid to broadly ellipsoidal, straight or incurved, 8-spored. Ascospores bi- to triseriate, overlapping, hyaline, guttulate, straight, fusoid-ellipsoidal with obtuse ends, widest in middle of apical cells, medianly 1-septate, tapering toward both ends, but more prominently toward base.
Notes — Similar to species of Mycosphaerella based on morphology, distinct in that it does not produce a Ramularia asexual morph. Amycosphaerella is reliably distinguished from other genera in the family based on its DNA phylogeny, and either ITS or LSU sequence data differentiates these genera.
Amycosphaerella africana (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807781
Basionym. Mycosphaerella africana Crous & M.J. Wingf., Mycologia 88, 3: 450. 1996.
≡Teratosphaeria africana (Crous & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 8. 2007.
= Mycosphaerella ellipsoidea Crous & M.J. Wingf., Mycologia 88: 452. 1996.
= Mycosphaerella aurantia A. Maxwell, Mycol. Res. 107: 353. 2003.
Specimens examined. AUSTRALIA, Western Australia, Bunbury, Summerlea plantation of Western Australian Chip and Pulp (WACAP), E115°37', S33°40', on E. globulus, 1 May 2000, A. Maxwell (holotype of M. aurantia, PERTH 05849543, culture ex-type CBS 110500). – SOUTH AFRICA, Western Cape Province, Stellenbosch, Stellenbosch Mountain, leaves of E. viminalis, Oct. 1994, P.W. Crous (holotype of M. africana, PREM 51917, cultures ex type CPC 794–796 = CBS 116154, 116155, 680.95); Western Cape Province, Pampoenvlei, on leaves of E. cladocalyx, Nov. 1994, P.W. Crous (holotype of M. ellipsoidea, PREM 51924, cultures ex-type CPC 849–851, 850 = CBS 110843).
Notes — Mycosphaerella ellipsoidea and M. aurantia are morphologically identical, and synonymous with Amycosphaerella africana. Amycosphaerella africana was originally described from small, 1–2 mm diam, pale brown leaf spots. Subsequent collections have shown that leaf spots can be 2–10 mm diam. Furthermore, ascospores were described as fusoid-ellipsoidal, constricted at its septum, (7–)8–10(–11) × (2–)2.5–3 μm, germinating at angles to the long axis of the spore, and turn brown and distorted upon germination (Crous & Wingfield 1996), though the latter observation appears to have been incorrect. Additional collections have shown ascospores to also be up to 15 μm in length, not always constricted at septa, and in some cases germinate from polar ends with germ tubes parallel to the long axis, remain hyaline, and develop lateral branches (Maxwell et al. 2003).
Paramycosphaerella Crous, Persoonia 31: 245. 2013.
Paramycosphaerella intermedia (M.A. Dick & K. Dobbie)
Quaedvlieg & Crous, comb. nov. — MycoBank MB807782
Basionym. Mycosphaerella intermedia M.A. Dick & K. Dobbie, New Zealand J. Bot. 39: 272. 2001.
Specimen examined. NEW ZEALAND, Bay of Plenty, Rotoehu Forest, Kohekohe Road, on living leaves of E. saligna, 30 June 1998, L. Renney (holotype NZFR1-M 3831, cultures ex-type NZFS 301.10 = CBS 114356, 114415).
Notes — The synonymy of M. intermedia with M. marksii, as proposed by Hunter et al. (2006), is not supported. Although morphologically similar, these two species are phylogenetically distinct, and better accommodated as two separate species in the genus Paramycosphaerella (Crous et al. 2013).
Paramycosphaerella marksii (Carnegie & Keane) Quaedvlieg & Crous, comb. nov. — MycoBank MB807783
Basionym. Mycosphaerella marksii Carnegie & Keane, Mycol. Res. 98: 414. 1994.
Specimens examined. AUSTRALIA, Victoria, Briagolong, on leaves of E. globulus, 14 Oct. 1994, A. Carnegie, culture CPC 935 = CBS 110920. – SOUTH AFRICA, Northern Province, Tzaneen, Magoebaskloof, on leaves of E. grandis × saligna hybrid, Oct. 1994, G. Kemp (holotype of P. epispermogonia, PREM 51936, cultures of a Paramycosphaerella sp. possibly related to the asexual morph are CPC 822 = CBS 110750, CPC 823 = CBS 110693).
Notes — Paramycosphaerella marksii is a common pathogen of eucalypts. However, Pseudocercospora epispermogonia was found only once, sporulating on the outside of spermatogonia associated with leaf spots of Paramycosphaerella marksii on eucalypts (Crous & Wingfield 1996). Cultures of P. marksii are homothallic, and have failed to produce an asexual morph in culture, despite incubation on numerous media and under a range of growth conditions. The cultures associated with the type of Pseudocercospora epispermogonia were generated from ascospores of M. marksii. The synonymy proposed by Hunter et al. (2006) is premature, as it appears that there are no ex-type cultures of Pseudocercospora epispermogonia.
Phaeophleospora Rangel, Arq. Mus. Nac. Rio de Janeiro 18: 162. 1916
Notes — The genus Phaeophleospora is based on P. eugeniae, which occurs on leaf spots of Eugenia uniflora (Myrtaceae) in Brazil (Crous et al. 1997). For several years this genus represented species that are presently accommodated in Teratosphaeria (= Kirramyces) (Andjic et al. 2007, Crous et al. 2007a). The taxa allocated to Phaeophleospora here are sexual, and lack any asexual state, but are placed in Phaeophleospora based on phylogenetic inference.
Phaeophleospora gregaria (Carnegie & Keane) Quaedvlieg & Crous, comb. nov. — MycoBank MB807784
Basionym. Mycosphaerella gregaria Carnegie & Keane, Mycol. Res. 101: 843. 1997.
≡ Mycosphaerella aggregata Carnegie & Keane, Mycol. Res. 98: 415. 1994. Nom. illegit (Art. 53.1).
Specimen examined. AUSTRALIA, Victoria, Nowa Nowa, on leaves of E. grandis, 11 Nov. 1990, A.J. Carnegie (holotype IMI 353729b, isotype VPRI 20739a, culture ex-type DAR 72368).
Phaeophleospora scytalidii (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807785
Basionym. Mycosphaerella scytalidii Crous & M.J. Wingf., Stud. Mycol. 55: 120. 2006.
Specimen examined. COLOMBIA, Angela Maria, on leaves of E. urophylla, Jan. 2004, M.J. Wingfield (holotype CBS H-19696, culture ex-type CBS 118493 = CPC 10998).
Phaeophleospora stramenti (Crous & Alfenas) Quaedvlieg & Crous, comb. nov. — MycoBank MB807786
Basionym. Mycosphaerella stramenti Crous & Alfenas, Stud. Mycol. 55: 123. 2006.
Specimen examined. BRAZIL, Minas Gerais, Belo Oriente, on leaf litter of Eucalyptus sp., 24 Jan. 2004, A.C. Alfenas (holotype CBS H-19698, culture ex-type CBS 118909 = CPC 11545–11547).
Pseudocercospora eucalyptorum Crous, M.J. Wingf., Marasas & B. Sutton, Mycol. Res. 93: 394. 1989
= Pseudocercospora pseudoeucalyptorum Crous, Stud. Mycol. 50: 210. 2004.
Specimens examined. SOUTH AFRICA, Western Cape Province, Stellenbosch, Stellenbosch Mountain, on leaves of E. nitens, 21 Dec. 1987, P.W. Crous (holotype of P. eucalyptorum, PREM 49112, cultures ex-type CPC 16 = CBS 110777). – SPAIN, Pontevedra, Lourizán, Areeiro, on leaves of E. globulus, 2003, J.P. Mansilla (holotype of P. pseudoeucalyptorum, CBS H-9893, culture ex-type CPC 10390 = CBS 114242).
Notes — The synonymy of P. pseudoeucalyptorum under P. eucalyptorum was discussed by Crous et al. (2013), and is again confirmed in the present study, which incorporates yet more gene loci.
Xenomycosphaerella Quaedvlieg & Crous, gen. nov. — MycoBank MB807787
Type species. Xenomycosphaerella elongata (Crous & M.J. Wingf.) Quaedvlieg & Crous.
Etymology. Resembling Mycosphaerella, but phylogenetically distinct.
Foliicolous, plant pathogenic. Ascomata pseudothecial, dark brown, subepidermal to erumpent, globose, with an apical ostiole; wall of 2–3 layers of medium brown textura angularis. Asci aparaphysate, fasciculate, bitunicate, subsessile, obovoid to broadly ellipsoidal, straight to slightly curved, 8-spored. Ascospores bi- to multiseriate, overlapping, hyaline, thin- or thick-walled, straight to slightly curved, fusoid-ellipsoidal with obtuse ends, widest in middle of the apical cell, medianly or unequally 1-septate, tapering towards both ends, but more prominently towards the lower end. The genus Xenomycosphaerella is only distinguishable from Mycosphaerella based on DNA sequence data. Either ITS or LSU sequence data can easily differentiate between these genera.
Notes — Xenomycosphaerella is morphologically a typical species of Mycosphaerella s.l., but is phylogenetically distinct. Presently no asexual morphs are known, and the only distinguishing characters from Mycosphaerella are to be found in its DNA sequences.
Xenomycosphaerella elongata (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807788
Basionym. Mycosphaerella elongata Crous & M.J. Wingf., Fung. Diversity 26: 163. 2007.
Specimen examined. VENEZUELA, El Piñal Lotes farm near Acarigua, on leaves of Eucalyptus camaldulensis × urophylla, Oct. 2006, M.J. Wingfield (holotype CBS-H 19824, cultures ex-type CPC 13378 = CBS 120735, CPC 13379–13380).
Xenomycosphaerella yunnanensis (Barber & T.I. Burgess) Quaedvlieg & Crous, comb. nov. — MycoBank MB807789
Basionym. Mycosphaerella yunnanensis Barber & T.I. Burgess, Fung. Diversity 24: 150. 2007.
Specimen examined. CHINA, Yunnan, Lancang, leaves of Eucalyptus urophylla, May 2005, B. Dell (holotype MURU 407, culture ex-type CBS 119975 = CMW 23443).
Zasmidium Fr., Summa Veg. Scand., section Post. (Stockholm): 407. 1849
Zasmidium eucalyptorum (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807790
Basionym. Mycosphaerella eucalyptorum Crous & M.J. Wingf., Stud. Mycol. 55: 112. 2006.
Specimen examined. INDONESIA, on leaves of Eucalyptus sp., Mar. 2004, M.J. Wingfield (holotype CBS H-19689, culture ex-type CBS 118496 = CPC 11174).
Neodevriesiaceae
Neodevriesiaceae Quaedvlieg & Crous, fam. nov. — MycoBank MB807766
Type genus. Neodevriesia Quaedvlieg & Crous.
Ascomata when present pseudothecial, black, immersed, sub-stomatal on leaves; wall with 2–3 layers of medium brown textura angularis. Asci aparaphysate, fasciculate, bitunicate, subsessile, obovoid to broadly ellipsoid, straight to slightly curved, 8-spored. Ascospores tri- to multiseriate, overlapping, hyaline, non-guttulate, thick-walled, straight, fusoid-ellipsoidal with obtuse ends, medianly 1-septate; germinating ascospores on MEA become brown and verruculose. Asexual morphs variable, filamentous. Conidiophores pigmented, proliferating sympodially. Conidia brown, solitary or in short mostly unbranched chains, subcylindrical to narrowly fusoid-ellipsoidal or obclavate, rarely septate, solitary conidia composed of a central stalk and two lateral arms with 1–2 transverse septa.
Notes — Members of Neodevriesiaceae are foliicolous, saprobic or plant pathogenic, and form part of which Ruibal et al. (2009) referred to as ‘Teratosphaeriaceae 2’ (now Neodevriesiaceae), in their DNA phylogenies. Several genera await to be described in this family, pending further collections. Morphologically, Neodevriesiaceae is similar to Teratosphaeriaceae, but further sampling is needed to highlight the ecological differences between the two families.
Neodevriesia Quaedvlieg & Crous, gen. nov. — MycoBank MB807768
Type species. Neodevriesia hilliana (Crous & U. Braun) Quaedvlieg & Crous.
Etymology. Named after its morphological similarity to Devriesia.
Hyphomycetous, foliicolous. Conidiophores dimorphic or not, solitary, medium brown, unbranched, smooth- and thick-walled, flexuous, septate. Conidiogenous cells terminal, medium brown, subcylindrical, smooth, proliferating sympodially; hila flattened, unthickened, somewhat darkened. Ramoconidia 0(–1)-septate if present, guttulate, subcylindrical, smooth, pale brown; hila somewhat thickened and darkened. Conidia medium brown, smooth, subcylindrical to narrowly fusoid-ellipsoidal or obclavate, apical conidium with obtuse apex, additional conidia with truncate ends, conidia straight to irregularly bent, mostly in unbranched chains; hila slightly darkened.
Notes — The genus Devriesia was introduced for a group of cladosporium-like heat tolerant hyphomycetes that are soil-inhabiting, with slightly darkened, planate, unthickened conidial scars, forming chlamydospores in culture (Seifert et al. 2004). Since then, several devriesia-like species were isolated from leaf litter or leaf spots, and placed in this genus based on molecular phylogenies, pending the sampling of more taxa, that would allow resolution of this generic complex.
Ecologically, the devriesia-like species do not exhibit heat resistance and also do not form chlamydospores (other than odd hyphal swellings in older cultures), which differs from Devriesia. Neodevriesia is also distinct from Devriesia s.str. in that conidiophores are medium brown and unbranched (pale brown and branched in Devriesia), conidia are thick-walled, medium brown, rarely septate, and conidial chains are short and mostly unbranched.
Neodevriesia hilliana (Crous & U. Braun) Quaedvlieg & Crous, comb. nov. — MycoBank MB807771
Basionym. Devriesia hilliana Crous & U. Braun, Stud. Mycol. 64: 37. 2009.
Specimen examined. NEW ZEALAND, Auckland, Auckland University Campus, Princes Street, on Macrozamia communis, 20 Apr. 2008, C.F. Hill, holotype CBS H-20340, culture ex-type CPC 15382 = CBS 123187.
Neodevriesia xanthorrhoeae (Crous, Pascoe & Jacq. Edwards) Quaedvlieg & Crous, comb. nov. — MycoBank MB808061
Basionym. Devriesia xanthorrhoeae Crous, Pascoe & Jacq. Edwards, Persoonia 25: 155. 2010.
Specimen examined. AUSTRALIA, Victoria, Grampians, S37°37'7.5" E142° 19'32.3" on leaves of Xanthorrhoea australis (Xanthorrhoeaceae), 21 Oct. 2009, P.W. Crous, I.G. Pascoe & J. Edwards, holotype CBS-H 20500, cultures ex-type CPC 17721, 17720 = CBS 128219.
Teratosphaeriaceae
Austroafricana Quaedvlieg & Crous, gen. nov. — MycoBank MB807793
Type species. Austroafricana associata (Crous & Carnegie) Quaedvlieg & Crous.
Etymology. Named after its occurrence in the Southern Hemisphere.
Foliicolous, plant pathogenic. Ascomata pseudothecial, black, subepidermal to erumpent, globose, with central apical ostiole; wall consisting of 2–3 layers of medium brown textura angularis. Asci aparaphysate, but with remains of hamathecium visible, fasciculate, bitunicate, subsessile, obovoid to ellipsoidal, straight to slightly curved, 8-spored. Ascospores tri- to multiseriate, overlapping, hyaline, guttulate, thick-walled, straight, fusoid-ellipsoidal with obtuse ends, medianly 1-septate, tapering towards both ends, but more prominently towards the lower end; ascospores with or without persistent mucus sheath. Germinating ascospores become either verruculose, brown and distorted, or remain hyaline and undistorted.
Notes — Morphologically, Austroafricana resembles species of Teratosphaeria, and we have been unable to find characters to separate them. An ecological distinction is that species of Austroafricana co-colonise lesions of hosts with other ascomycetes, and have a wide host range. Austroafricana parva, for example, has been well documented as a pathogen of Eucalyptus and Proteaceae (Crous et al. 2008). Either ITS or LSU sequence data differentiate Austroafricana and Teratosphaeria.
Austroafricana associata (Crous & Carnegie) Quaedvlieg & Crous, comb. nov. — MycoBank MB807794
Basionym. Mycosphaerella associata Crous & Carnegie, Fung. Diversity 26: 159. 2007.
≡ Teratosphaeria associata (Crous & Carnegie) Crous & U. Braun, Stud. Mycol. 58: 9. 2007.
Specimen examined. AUSTRALIA, New South Wales, South Grafton, Grafton City Council Landfill Plantation, E152°54'38", S29°46'21", on leaves of Corymbia henryii, 16 Feb. 2006, A.J. Carnegie (holotype CBS-H 19833, isotype DAR 78031, cultures ex-type CPC 13119 = CBS 120730, CPC 13120, occurring with Lembosina sp.).
Austroafricana keanei (Carnegie & G.S. Pegg) Quaedvlieg & Crous, comb. nov.— MycoBank MB807795
Basionym. Teratosphaeria keanei Carnegie & G.S. Pegg, Australas.Pl. Pathol. 40: 368. 2011.
Specimen examined. AUSTRALIA, Queensland, Kingaroy, Berry’s Plantation, on living leaves of E. globulus × E. camaldulensis, 14 Feb. 2004, A.J. Carnegie (holotype BRIP 52593b, culture ex-type CBS 130524).
Austroafricana parva (R.F. Park & Keane) Quaedvlieg & Crous, comb. nov. — MycoBank MB807796
Basionym. Mycosphaerella parva R.F. Park & Keane, Trans. Brit. Mycol. Soc. 79: 99. 1982.
≡ Teratosphaeria parva (R.F. Park & Keane) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
= Mycosphaerella grandis Carnegie & Keane, Mycol. Res. 98: 414. 1994.
Specimen examined. SOUTH AFRICA, Western Cape Province, Stellenbosch, on leaves of Eucalyptus sp., Dec. 2003, P.W. Crous, CPC 10935 = CBS 116289.
Eupenidiella Quaedvlieg & Crous, gen. nov. — MycoBank MB807797
Type species. Eupenidiella venezuelensis (Crous & U. Braun) Quaedvlieg & Crous.
Etymology. Named after its similarity to the genus Penidiella.
Hyphomycetous, associated with opportunistic human infections. Mycelium consisting of branched, septate, smooth to finely verruculose, thin-walled, subhyaline, pale olivaceous to medium brown hyphae. Conidiophores solitary, erect, subcylindrical, straight to flexuous to once geniculate, septate, pale to medium olivaceous-brown or brown, thin-walled, terminally penicillate, branched portion composed of true branchlets and/or a single set or several sets of ramoconidia, branchlets; occasionally with a few additional conidiophores reduced to conidiogenous cells. Conidiogenous cells terminal and intercalary, unbranched, subcylindrical, medium brown, smooth to finely verruculose, with 1–3(–4) flat-tipped, loci slightly thickened and darkened-refractive loci, often subdenticulate. Conidia ellipsoid-ovoid, subcylindrical, pale to medium olivaceous-brown or brown, finely verruculose, in branched chains; ramoconidia 0–1(–3)-septate, with 1–3 subdenticulate apical hila; secondary conidia 0(–1)-septate, ellipsoid, obovoid to irregular, hila sometimes slightly thickened and darkened-refractive.
Notes — Eupenidiella is similar to Penidiella, but differs in having dimorphic conidiophores, and conidiogenous loci that are subdenticulate, and slightly darkened-refractive. In contrast, they are barely darkened-refractive in Penidiella, and not subdenticulate.
Eupenidiella venezuelensis (Crous & U. Braun) Quaedvlieg & Crous, comb. nov. — MycoBank MB807798
Basionym. Penidiella venezuelensis Crous & U. Braun, Stud. Mycol. 58: 24. 2007.
Specimen examined. VENEZUELA, isolated from man with tinea nigra, Jan. 1975, D. Borelli (holotype CBS H-19934, culture ex-type CBS 106.75).
Euteratosphaeria Quaedvlieg & Crous, gen. nov. — MycoBank MB807799
Type species. Euteratosphaeria verrucosiafricana (Crous & M.J. Wingf.) Quaedvlieg & Crous.
Etymology. Named after the genus Teratosphaeria.
Foliicolous, plant pathogenic.Ascomata pseudothecial, solitary, black, immersed becoming erumpent, globose; ostiole apical, central; wall of 2–3 layers of medium brown textura angularis. Asciaparaphysate, fasciculate, bitunicate, subsessile, obovoid to narrowly ellipsoid, straight or slightly incurved, 8-spored. Ascospores tri- to multiseriate, overlapping, hyaline, guttulate, thin-walled, straight, ellipsoid with obtuse ends, medianly 1-septate, tapering towards both ends, but more prominently towards the lower end.
Notes — Euteratosphaeria is morphologically similar to species of Teratosphaeria. The type species, E. verrucosiafricana, is distinct from species in Teratosphaeria in that ascospores turn brown and verruculose upon germination, but germinate with more than two germ tubes (which remain hyaline), and grow irregular to the long axis of the spore. More taxa need to be collected to determine if this is a feature of value at species or generic level. Colonies in culture remain sterile, have sparse aerial mycelium, and form chains of dark brown, thick-walled chlamydospores that aggregate into small microsclerotia.
Euteratosphaeria verrucosiafricana (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807800
Basionym. Mycosphaerella verrucosiafricana Crous & M.J. Wingf., Stud. Mycol. 55: 125. 2006.
Specimen examined. INDONESIA, Northern Sumatra, on leaves of Eucalyptus sp., Feb. 2004, M.J. Wingfield (holotype CBS H-19705, culture ex-type CBS 118496 = CPC 11167, CBS 118497 = CPC 11169, CBS 118498 = CPC 11170).
Myrtapenidiella Quaedvlieg & Crous, gen. nov. — MycoBank MB807801
Type species. Myrtapenidiella tenuiramis (Crous & Summerell) Quaedvlieg & Crous.
Etymology. Named after its similarity to the genus Penidiella and the host plant family, Myrtaceae.
Hyphomycetous, foliicolous, saprobic. Mycelium consisting of branched, septate, smooth to slightly verruculose or warty, pale to dark brown hyphae. Conidiophores dimorphic. Microconidiophores reduced to conidiogenous cells, lateral on hyphae, with or without a basal septum. Macroconidiophores erect, arising as lateral branches from superficial hyphae, or as terminal ends of creeping hyphae, variable in length, pale to dark brown, smooth to finely verruculose. Conidiogenous cells terminal, rarely intercalary, cylindrical, tapering to a flattened apical region, finely verruculose, medium brown, paler toward the apex, with up to two conidiogenous loci, often apical, sometimes situated on small lateral shoulders, loci truncate, not denticulate; scars slightly thickened, darkened, visible as small dark circles when viewed directly from above. Ramoconidia subcylindrical or obovoid, 0–3-septate, base subtruncate to slightly rounded, but not coronate, pale to medium brown, finely verruculose, slightly thick-walled; hila thickened and darkened. Conidia in branched acropetal chains, broadly fusiform to obovoid or subcylindrical, 0–1-septate, pale to medium brown; wing-like mucoid sheaths present in some species. Chlamydospores globose to subovoid, dark brown, thin-walled, terminal or intercalary, mostly 1-celled, rarely septate, produced from narrow hyphae.
Notes — Myrtapenidiella is distinguished from Penidiella by having dimorphic conidiophores with irregular branching patterns, septate ramoconidia, with hila that are slightly thickened and darkened. Some species of Myrtapenidiella form chlamydospores, or have wing-like mucoid sheaths on conidia, although these do not appear to be generic features shared by all taxa. All species presently known occur on members of the Myrtaceae.
Myrtapenidiella corymbia (Cheew. & Crous) Quaedvlieg & Crous, comb. nov. — MycoBank MB807802
Basionym. Penidiella corymbia Cheew. & Crous, Persoonia 23: 72. 2009.
Specimen examined. AUSTRALIA, Northern Territory, Emerald Springs, S13°37'13.3" E131°36'40", on Corymbia foelscheana, 22 Sept. 2007, coll. B.A. Summerell, isol. P.W. Crous (holotype CBS H-20288, culture ex-type CPC 14640 = CBS 124769, CPC 14641, 14642).
Myrtapenidiella eucalypti (Cheew., K.D. Hyde & Crous)
Quaedvlieg & Crous, comb. nov. — MycoBank MB807803
Basionym. Penidiella eucalypti Cheew., K.D. Hyde & Crous, Persoonia 21: 86. 2008.
Specimens examined. THAILAND, Payakpoompisai, Mahasarakam, on leaves of E. camaldulensis, July 2007, P. Suwannawong (holotype CBS H-20136, cultures ex-type CBS 123246 = CPC 15411, AGI064.1, AGI064.2; occurring on a lesion in association with Harknessia sp.); Satuk, Burirum, on leaves of E. camaldulensis, July 2007, R. Cheewangkoon, cultures CBS 123245, CPC 15449 (occurring on a lesion in association with several microfungi).
Myrtapenidiella tenuiramis (Crous & Summerell) Quaedvlieg & Crous, comb. nov. — MycoBank MB807804
Basionym. Penidiella tenuiramis Crous & Summerell, Persoonia 23: 127. 2009.
Specimen examined. AUSTRALIA, Tasmania, Tasman Peninsula, Brown Mountain walk, S43°11'13.9" E147°51'00.8", on leaves of E. tenuiramis, 14 Oct. 2006, coll. B.A. Summerell & P. Summerell (holotype CBS H-20253, isol. P.W. Crous, cultures ex-type CPC 13692 = CBS 124993, CPC 12693, 13694).
Neocatenulostroma Quaedvlieg & Crous, gen. nov. — MycoBank MB807805
Type species. Neocatenulostroma microsporum (Joanne E. Taylor & Crous) Quaedvlieg & Crous.
Etymology. Named after the genus Catenulostroma.
Plant pathogenic (foliicolous) and saprobic. Mycelium immersed, pale brown, septate, smooth. Ascomata amphigenous, immersed, substomatal, subepidermal, with small or no papilla, globose to slightly subglobose, with periphysate central ostiole. Peridium comprising two strata, the outer stratum of thick-walled, medium brown small-celled textura angularis, becoming thinner-walled and hyaline in the inner stratum. Asci obclavate to globose, bitunicate, sessile, narrowing to a rounded apex, 8-spored. Ascospores broadly fusiform, medianly 1-septate, hyaline to pale brown, smooth, eguttulate, with obtuse apices, with or without a mucilaginous sheath. Colonies sporodochial, pulvinate, dry, dark brown to black. Conidiophores macronematous, mainly straight, caespitose, closely packed, emerging through stomata forming the sporodochia, short, smooth, olivaceous-brown. Conidiogenous cells irregularly cylindrical, terminal, holoblastic, delimitation of conidium by a single septum, with retrogressive delimitation of next conidium, giving an unconnected chain of conidia, secession schizolytic. Conidia variously shaped, cylindrical, Y-shaped, ellipsoidal, straight or curved, with rounded or truncated apices, catenate in branched basipetal chains, which are schizogenous, olivaceous to red-brown, multiseptate, with transverse and often longitudinal or oblique septa.
Notes — Species of Trimmatostroma s.str. are genetically distinct from Catenulostroma. Furthermore, they are also ecologically different, in that Trimmatostroma includes taxa that are saprobic, and occur on dead twigs and branches, and not associated with leaf spots (Crous et al. 2007a). Catenulostroma presently contains several undescribed genera in the Teratosphaeriaceae. They share colonies that are sporodochial, pulvinate, dry, dark brown to black, giving rise to chains of multiseptate, brown conidia.
Neocatenulostroma includes species that are plant pathogenic (N. abietis, N. microsporum) or occur on rocks (N. germanicum). Although N. abietis and N. microsporum were considered plant pathogenic (Butin et al. 1996, Taylor & Crous 2000), N. abietis has since been isolated from a range of substrates, commonly as either a saprobe or endophyte in pine needles. The genus Catenulostroma is based on C. protearum, which is associated with dead leaves of Proteaceae, and probably is not plant pathogenic (Crous et al. 2009b). Morphologically, Catenulostroma s.str. contains colonies that produce muriform eu- or distoseptate conidia in branched chains. Neocatenulostroma on the other hand, has chains of irregularly branched conidia with transverse, longitudinal or oblique septa, variously shaped, from cylindrical to Y-shaped or ellipsoidal.
Neocatenulostroma abietis (Butin & Pehl) Quaedvlieg & Crous, comb. nov. — MycoBank MB807806
Basionym. Trimmatostroma abietis Butin & Pehl, Antonie van Leeuwenhoek 69: 204. 1996.
≡ Catenulostroma abietis (Butin & Pehl) Crous & U. Braun, Stud. Mycol. 58: 15. 2007.
Specimen examined. SWEDEN, Götenborg, isolated from outdoor painted walls, culture CBS 110038.
Neocatenulostroma germanicum (Crous & U. Braun) Quaedvlieg & Crous, comb. nov. — MycoBank MB807807
Basionym. Catenulostroma germanicum Crous & U. Braun, Stud. Mycol. 58: 16. 2007.
Specimen examined. GGERMANY (former West-Germany), isolated from stone, Oct. 1988, J. Kuroczkin (holotype CBS H-19936, culture ex-type CBS 539.88).
Neocatenulostroma microsporum (Joanne E. Taylor & Crous) Quaedvlieg & Crous, comb. nov. — MycoBank MB807808
Basionym. Trimmatostroma microsporum Joanne E. Taylor & Crous, Mycol. Res. 104: 631. 2000.
≡ Catenulostroma microsporum (Joanne E. Taylor & Crous) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
= Teratosphaeria microspora Joanne E. Taylor & Crous, Mycol. Res. 104: 631. 2000.
Specimens examined. SOUTH AFRICA, Western Cape Province, Somerset West, Hilly Lands Farm, on a living leaf of a Protea cynaroides, 21 July 1998, S. Denman & J.E. Taylor (holotype of Teratosphaeria microspora, PREM 56207a, culture ex-type CPC 1960 = CBS 101951; holotype of Trimmatostroma microspora, PREM 56207b, CPC 1832 = CBS 110890).
Neohortaea Quaedvlieg & Crous, gen. nov. — MycoBank MB807809
Type species. Neohortaea acidophila (Hölker, Bend, Pracht, Tetsch, Tob. Müll., M. Höfer & de Hoog) Quaedvlieg & Crous.
Etymology. Named after its morphological similarity to the genus Hortaea.
Colonies smooth, mucilaginous, black. Mycelium consisting of pale olivaceous, thin-walled hyphae that become dark brown with thick walls, producing copious mucus. Conidiogenous cells integrated on hyphae, reduced to conidiogenous loci, with several minute percurrent proliferations. Conidia initially subhyaline, smooth, thin-walled, ellipsoidal, becoming dark brown, broadly ellipsoid to clavate, septum median, hilum truncate with minute marginal frill; conidiation microcyclic.
Notes — Morphologically similar to Hortaea (Teratosphaeriaceae), except that the latter has prominently annellate conidiogenous loci, and conidia that develop several septa, forming chlamydospores with age (de Hoog et al. 2000, Plemenitas et al. 2008).
Neohortaea acidophila (Hölker, Bend, Pracht, Tetsch, Tob. Müll., M. Höfer & de Hoog) Quaedvlieg & Crous, comb. nov. — MycoBank MB807810
Basionym. Hortaea acidophila Hölker, Bend, Pracht, Tetsch, Tob. Müll., M. Höfer & de Hoog, Antonie van Leeuwenhoek 86: 293. 2004.
Specimen examined. GERMANY, Bergheim, from lignite, May 2001, U. Hölker, culture ex-type CBS 113389.
Neophaeothecoidea Quaedvlieg & Crous, gen. nov. — MycoBank MB807811
Type species. Neophaeothecoidea proteae (Crous) Quaedvlieg & Crous.
Etymology. Named after its similarity to the genus Phaeothecoidea.
Hyphomycetous, saprobic. Hyphaein vitro creeping, brown, verruculose, branched, septate, becoming swollen, verruculose, dark brown, or forming a mucoid capsule filled with endoconidia derived from hyphal cells that turn brown and become thick-walled; end cells divide into several endoconidia, which are released upon rupture of the cell wall. Endoconidia medium to dark brown, verruculose to verrucose to warty, thick-walled, ellipsoid to obovoid or obclavate; after liberation swelling, becoming transversely 1-septate, or with several oblique septa, again forming endoconidia, becoming warty with age, the outer layer peels off after endoconidia are released.
Notes — Neophaeothecoidea proteae was initially described in Phaeothecoidea as it clustered close to other species of Phaeothecoidea s.str. However, N. proteae was originally isolated as a coelomycete. In culture, it grew like a yeast, and was thought to represent Coniothyrium leucospermi (= Coniozyma leucospermi; Swart et al. 1998, Taylor & Crous 2001, Marincowitz et al. 2008). Based on present data, it appears to represent a distinct genus.
Neophaeothecoidea proteae (Crous) Quaedvlieg & Crous, comb. nov. — MycoBank MB807812
Basionym. Phaeothecoidea proteae Crous, Persoonia 20: 71. 2008.
Specimen examined. SOUTH AFRICA, Western Cape Province, Stellenbosch, Elsenburg Farm, on leaves of Protea repens, 23 July 1999, S. Denman (holotype CBS H-20092, cultures ex-type CPC 2828–2830, 2831 = CBS 114129).
Neotrimmatostroma Quaedvlieg & Crous, gen. nov. — MycoBank MB807813
Type species. Neotrimmatostroma excentricum (B. Sutton & Ganap.) Quaedvlieg & Crous.
Etymology. Named after its similarity to the genus Trimmatostroma.
Foliicolous, plant pathogenic. Ascomata pseudothecial, separate, dark brown, subepidermal, becoming erumpent, globose; ostiole apical, central, frequently opening by irregular rupture; wall of 2–3 layers of dark brown, thick-walled textura angularis. Asci fasciculate, bitunicate, aparaphysate (remains of the hamathecium observed in some ascomata), 8-spored, obovoid to broadly ellipsoidal, straight to slightly incurved. Ascospores tri- to multiseriate, fusoid-ellipsoidal with obtuse ends, hyaline, smooth, pale brown and verruculose in old asci, becoming 3-septate, not constricted at median septum, thick-walled, guttulate, widest in the middle of the apical cell, with persistent mucous sheath. Conidiomata sporodochial, at times concentrically arranged, dark brown to black, dry, powdery, confined to the lesions. Conidiophores branched at base, pale brown, smooth, loosely aggregated, pale brown. Conidiogenous cells terminal, cylindrical to doliiform, holothallic, pale brown. Conidia formed in basipetal chains, smooth, medium brown, 4-celled, consisting of two basal cells with truncate lateral sides (adhesion scars present when catenulate), each giving rise to a secondary globose apical cell, that may extend and develop two additional septa; septa dark brown and thick-walled between the primary and secondary cells.
Notes — Neotrimmatostroma is distinguished from Teratosphaeria in that its ascospores become brown and up to 3-septate in older asci, have a persistent mucoid sheath, and frequently have remnants of the hamathecium in the ascomatal cavity. The asexual morph is distinguished from Trimmatostroma in that it is plant pathogenic, and conidiogenous cells give rise to 4-celled conidia with two basal cells that have truncate lateral sides and two globose apical cells, separated by dark brown, thick-walled septa. Although there are presently no cultures available of Trimmatostroma bifarium, which is also pathogenic to Eucalyptus, the latter fungus is clearly congeneric with N. excentricum.
Neotrimmatostroma bifarium (Gadgil & M.A. Dick) Quaedvlieg & Crous, comb. nov. — MycoBank MB807814
Basionym. Trimmatostroma bifarium Gadgil & M.A. Dick, New Zealand J. Bot. 21: 49. 1983.
Description and illustration — Gadgil & Dick 1983, Park et al. 2000.
Specimen examined. NEW ZEALAND, Kinleith, on leaves of E. regnans, Sept. 1981, D.J. Rawcliffe (holotype NZFRI, isotype PDD 42845).
Neotrimmatostroma excentricum (B. Sutton & Ganap.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807815
Basionym. Trimmatostroma excentricum B. Sutton & Ganap., New Zealand J. Bot. 16: 529. 1978.
≡ Catenulostroma excentricum (B. Sutton & Ganap.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
= Mycosphaerella excentrica Crous & Carnegie, Fung. Diversity 26: 164. 2007.
≡ Teratosphaeria excentrica (Crous & Carnegie) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
Description and illustration — Sutton & Ganapathi 1978, Crous et al. 2007c.
Specimen examined. AUSTRALIA, New South Wales, Mackenzie Creek Road, Kempsey, Byrne Plantation, E152°27'47" S30°53'15", on leaf spots of E. agglomerata, 13 Apr. 2005, G. Price (holotype of sexual morph CBS H-19829, isotype DAR 78033, culture ex-type CPC 13092 = CBS 121102).
Apenidiella Quaedvlieg & Crous, gen. nov. — MycoBank MB807816
Type species. Apenidiella strumelloidea (Milko & Dunaev) Quaedvlieg & Crous.
Etymology. Named after its similarity to the genus Penidiella.
Hyphomycetous, saprobic. Mycelium consisting of branched, septate, smooth, hyaline to pale olivaceous, hyphae, sometimes constricted at dark septa. Conidiophores solitary, erect, arising from superficial mycelium, reduced to conidiogenous cells or macronematous, subcylindrical, straight to slightly curved, sometimes attenuated towards the apex, septate, medium brown, smooth, apex with a terminal conidiogenous cell giving rise to a single set of ramoconidia. Conidiogenous cells terminal, integrated, subcylindrical, straight, pale brown, thin-walled, smooth, apex obtusely rounded to somewhat clavate; loci terminal, occasionally subterminal or lateral, unthickened to slightly thickened and darkened, not refractive. Conidia in branched chains; ramoconidia subcylindrical, with 1–3 terminal loci, olivaceous-brown, smooth; secondary conidia ellipsoidal, with one side straight and the other convex, straight to slightly curved, subhyaline to olivaceous-brown, smooth, thin-walled; hila unthickened to slightly thickened and darkened, not refractive.
Notes — Apenidiella is distinct from Penidiella in that conidiophores end with a solitary conidiogenous cell that gives rise to a single set of ramoconidia (thus not penicillate with branches as in Penidiella s.str.). Ramoconidia and conidia are aseptate, smooth and thin-walled, subhyaline to olivaceous-brown. Nosrati et al. (2010) reported this fungus to be pathogenic to greenhouse cucumbers in Iran. However, based on their illustrations, they appear to have been working with a species of Cladosporium (brown conidia with darkened, thickened, refractive scars; see Bensch et al. 2012).
Apenidiella strumelloidea (Milko & Dunaev) Quaedvlieg & Crous, comb. nov. — MycoBank MB807817
Basionym. Cladosporium strumelloideum Milko & Dunaev, Novosti Sist. Nizsh. Rast. 23: 134. 1986.
≡ Penidiella strumelloidea (Milko & Dunaev) Crous & U. Braun, Stud. Mycol. 58: 23. 2007.
Specimen examined. RUSSIA, Yaroslavl Region, Rybinsk Reservoir, mouth of Sutka River, isolated from leaf of Carex sp. (Cyperaceae), from stagnant water, S. Ozerskaya (holotype BKMF-2534, culture ex-type CBS 114484).
Parateratosphaeria Quaedvlieg & Crous, gen. nov. — MycoBank MB807818
Type species. Parateratosphaeria bellula (Crous & M.J. Wingf.) Quaedvlieg & Crous.
Etymology. Named after its similarity to the genus Teratosphaeria.
Foliicolous, plant pathogenic. Ascomata amphigenous, immersed, substomatal, black, singular, gregarious; pyriform or globose, with a non-periphysate to periphysate papillate ostiole, becoming erumpent through the stomatal pore. Peridium with 3–4 layers of compressed textura angularis that comprise an outer stratum of dark brown thick-walled cells with large lumina that become hyaline and thin-walled in the inner stratum. Paraphyses absent. Asci obclavate to cylindrical, pedicel short, straight, tapering to a narrow rounded apex with an indistinct ocular chamber, 8-spored, bitunicate with fissitunicate dehiscence. Ascospores overlapping bi- to multiseriate, 1-septate, fusiform to ellipsoidal, with obtuse ends, straight, hyaline, guttulate, surrounded by an inconspicuous mucilaginous sheath. Germinating ascospores become brown and verruculose.
Notes — Parateratosphaeria is morphologically indistinguishable from Teratosphaeria. Ascospores turn brown and verruculose during germination and some species also have a mucoid sheath, though these features also occur in some taxa of Teratosphaeria s.str. The genus Parateratosphaeria is only distinguishable from Teratosphaeria based on DNA sequence data. Either ITS or LSU sequence data differentiates these genera.
Parateratosphaeria altensteinii (Crous) Quaedvlieg & Crous, comb. nov. — MycoBank MB807819
Basionym. Teratosphaeria altensteinii Crous, Persoonia 21: 139. 2008.
Specimen examined. SOUTH AFRICA, Western Cape Province, Kirstenbosch Botanical Garden, on living leaves of Encephalartos altensteinii, 6 Jan. 2008, P.W. Crous, M.K. Crous, M. Crous & K. Raath (holotype CBS H-20162, culture ex-type CPC 15133 = CBS 123539, CPC 15134–15135).
Parateratosphaeria bellula (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807820
Basionym. Mycosphaerella bellula Crous & M.J. Wingf., Mycotaxon 46: 20. 1993.
≡ Teratosphaeria bellula (Crous & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
Specimen examined. SOUTH AFRICA, Western Cape Province, Stellenbosch, J.S. Marais Botanical Garden, on leaves of Protea eximia, Apr. 1998, J.E. Taylor (epitype CBS H-20094, culture ex-epitype CPC 1821 = CBS 111700).
Parateratosphaeria karinae (Crous) Quaedvlieg & Crous, comb. nov. — MycoBank MB807821
Basionym. Teratosphaeria karinae Crous, Persoonia 26: 80. 2011.
Specimen examined. SOUTH AFRICA, Western Cape Province, Hermanus, Fernkloof Nature Reserve, S34°23'38" E19°16'9.7", on leaf bracts of Phaenocoma prolifera, 2 May 2010, K.L. Crous & P.W. Crous (holotype CBS H-20534, cultures ex-type CPC 18256, 18255 = CBS 128774).
Parateratosphaeria marasasii (Crous) Quaedvlieg & Crous, comb. nov. — MycoBank MB807822
Basionym. Teratosphaeria marasasii Crous, Persoonia 20: 79. 2008.
Specimen examined. SOUTH AFRICA, Western Cape Province, Kirstenbosch Botanical Garden, on living leaves of Protea sp., 6 Jan. 2008, P.W. Crous & M. Crous (holotype CBS H-20105, cultures ex-type CBS 122899 = CPC 14889, CPC 14890, 14891; on leaf spots in association with Coleroa senniana).
Parateratosphaeria persoonii (Crous & L. Mostert) Quaedvlieg & Crous, comb. nov. — MycoBank MB807823
Basionym. Teratosphaeria persoonii Crous & L. Mostert, Persoonia 20: 80. 2008.
Specimen examined. SOUTH AFRICA, Western Cape Province, Jonkershoek, S33°59'4.2" E18°57'16.1", on living leaves of Protea sp., 1 Apr. 2007, P.W. Crous & L. Mostert (holotype CBS H-20102, cultures ex-type CPC 13972 = CBS 122895, CPC 13973, 13974; on leaf spots in association with T.jonkershoekensis = Xenoteratosphaeria jonkershoekensis).
Pseudoteratosphaeria Quaedvlieg & Crous, gen. nov. — MycoBank MB807824
Type species. Pseudoteratosphaeria perpendicularis (Crous & M.J. Wingf.) Quaedvlieg & Crous.
Etymology. Named after its morphological similarity to the genus Teratosphaeria.
Foliicolous, plant pathogenic or saprobic. Ascomata pseudothecial, epiphyllous, single, black, subepidermal, globose; ostiole central, apical; wall of 2–3 layers of medium brown textura angularis. Asci aparaphysate, fasciculate, bitunicate, subsessile, obovoid to broadly ellipsoid, slightly incurved, 8-spored. Ascospores multiseriate, overlapping, hyaline, guttulate, thin-walled, straight, fusoid-ellipsoidal, ellipsoidal or obovoid with obtuse ends, medianly 1-septate, widest in the middle of the apical cell, constricted at the septum, tapering towards both ends, but more prominently towards the lower end.
Notes — Pseudoteratosphaeria is morphologically similar to species of Teratosphaeria and can only be distinguished based on DNA phylogeny. No asexual morphs are presently known for Pseudoteratosphaeria. Either ITS or LSU sequence data differentiates these genera.
Pseudoteratosphaeria flexuosa (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807825
Basionym. Mycosphaerella flexuosa Crous & M.J. Wingf., Mycol. Mem. 21: 58. 1998.
≡ Teratosphaeria flexuosa (Crous & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
Specimen examined. COLOMBIA, La Selva, leaves of E. globulus, May 1995, M.J. Wingfield (holotype PREM 54401, cultures ex-type STE-U 1107– 1109 = CBS 111012).
Pseudoteratosphaeria gamsii (Crous) Quaedvlieg & Crous, comb. nov. — MycoBank MB807826
Basionym. Mycosphaerella gamsii Crous, Stud. Mycol. 55: 113. 2006.
≡ Teratosphaeria gamsii (Crous) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
Specimen examined. INDIA, Palampur, on leaves of Eucalyptus sp., Mar. 2004, W. Gams & M. Arzanlou (holotype CBS H-19690, culture ex-type CBS 118495 = CPC 11138–11140).
Pseudoteratosphaeria ohnowa (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807827
Basionym. Mycosphaerella ohnowa Crous & M.J. Wingf., Stud. Mycol. 50: 206. 2004.
≡ Teratosphaeria ohnowa (Crous & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
Specimen examined. SOUTH AFRICA, Mpumalanga, Hazy View, on leaves of E. grandis, 27 Mar. 1995, M.J. Wingfield (holotype PREM 51912, cultures ex-type CPC 1004 = CBS 112896, CPC 1005 = CBS 112973, CPC 1006 = CBS 110949).
Pseudoteratosphaeria perpendicularis (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807828
Basionym. Mycosphaerella perpendicularisCrous & M.J. Wingf., Stud. Mycol. 55: 113. 2006.
≡ Teratosphaeria perpendicularis (Crous & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
Specimen examined. COLOMBIA, Suiza, on leaves of Eucalyptus eurograndis, Jan. 2004, M.J. Wingfield (holotype CBS H-19691, cultures ex-type CBS 118367 = CPC 10983–10985).
Pseudoteratosphaeria secundaria (Crous & Alfenas) Quaedvlieg & Crous, comb. nov. — MycoBank MB807829
Basionym. Mycosphaerella secundaria Crous & Alfenas, Stud. Mycol. 55: 122. 2006.
≡ Teratosphaeria secundaria (Crous & Alfenas) Crous & U. Braun, Stud. Mycol. 58: 11. 2007.
Specimen examined. BRAZIL, Bahia, Teixeira de Freitas, on leaves of Eucalyptus sp., 8 June 2004, A.C. Alfenas (holotype CBS H-19697, culture ex-type CBS 118507 = CPC 11551–11553).
Pseudoteratosphaeria stramenticola (Crous & Alfenas) Quaedvlieg & Crous, comb. nov. — MycoBank MB807830
Basionym. Mycosphaerella stramenticola Crous & Alfenas, Stud. Mycol. 55: 123. 2006.
≡ Teratosphaeria stramenticola (Crous & Alfenas) Crous & U. Braun, Stud. Mycol. 58: 11. 2007.
= Mycosphaerella parkiiaffinis Crous & M.J. Wingf., Fung. Diversity 26: 168. 2007.
≡ Teratosphaeria parkiiaffinis (Crous & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
Specimens examined. BRAZIL, Bahia, Eunapolis, on leaf litter of Eucalyptus sp., 23 May 2004, A.C. Alfenas (holotype of M. stramenticola, CBS H-19699, cultures ex-type CBS 118506 = CPC 11438–11440). – VENEZUELA, near Acarigua, on leaves of Eucalyptus urophylla, Oct. 2006, M.J. Wingfield (holotype of M. parkiiaffinis, CBS H-19823, cultures ex-type CPC 13373 = CBS 120737, CPC 13374).
Notes — Pseudoteratosphaeria stramenticola was isolated from leaf litter of a Eucalyptus sp. in Brazil (Crous et al. 2006). Ascospores were fusoid-ellipsoidal, (8–)9–10(–11) × 3(–3.5) μm. In contrast, Mycosphaerella parkiiaffinis was associated with well-defined leaf spots of E. urophylla in Venezuela, and its ascospores were fusoid-ellipsoidal, (8–)9–10 × 3(–3.5) μm (Crous et al. 2007c). These two species are also identical based on their DNA phylogeny, which provides further evidence that some of these pathogens are endophytes.
Queenslandipenidiella Quaedvlieg & Crous, gen. nov. — MycoBank MB807831
Type species. Queenslandipenidiella kurandae (Crous & J.K. Stone) Quaedvlieg & Crous.
Etymology. Named after its occurrence in Queensland, Australia, and morphological similarity to the genus Penidiella.
Hyphomycetous. Mycelium consisting of smooth, brown, thick-walled, branched, hyphae. Conidiophores macronematous, erect, arising from superficial hyphae, branching penicillate, septate. Conidiogenous apparatus consisting of several sets of branches; primary branches subcylindrical, brown, smooth, 0–1-septate, giving rise to 1–2 conidiogenous cells or secondary branches; secondary branches 0–1-septate. Conidiogenous cells doliiform to subcylindrical, brown, smooth, with 1–2 apical scars that are flattened, not darkened, refractive nor thickened. Ramoconidia brown, smooth, with 2–3 apical loci, narrowly ellipsoidal to subcylindrical. Conidia occurring in short chains, brown, smooth, ellipsoidal, apex obtuse, base subtruncate with or without a flattened inconspicuous hilum.
Notes — Queenslandipenidiella was placed in Penidiella based on having penicillate conidiophores that produce brown conidia with inconspicuous hila, as well as phylogenetic placement in the Teratosphaeriaceae (Crous et al. 2007c). Ecologically it is very interesting, as it colonises the exudates of bleeding cankers that are common on many of the trees lining a rainforest walking trail at Kuranda in northern Queensland. Whether it is the cause of the cankers, or simply a secondary invader on the exudates, remains unknown. Queenslandipenidiella can be distinguished from Penidiella s.str. by its well defined penicillate conidiophores, with clear branching structure, which is less apparent in species of Penidiella s.str. (Crous et al. 2007a, c).
Queenslandipenidiella kurandae (Crous & J.K. Stone)
Quaedvlieg & Crous, comb. nov. — MycoBank MB807832
Basionym. Penidiella kurandae Crous & J.K. Stone, Fungal Planet 16. 2007.
Specimens examined. AUSTRALIA, Queensland, Cairns, Kuranda, Kuranda walking trail, S16°49'24.6" E145°38'2.6", from exudates of stem cankers on unidentified rainforest tree, 30 Aug. 2006, P.W. Crous & J.K. Stone (holotype CBS H-19932, culture ex-type CPC 13333 = CBS 121715, CPC 13334; ditto, S16°49'29" E145°38'28.6", paratype CBS H-19924, CPC 13335).
Readeriella Syd. & P. Syd., Ann. Mycol. 6, 5: 484. 1908
Readeriella deanei Quaedvlieg, Summerell & Crous, sp. nov. — MycoBank MB807833; Fig. 7
Fig. 7.

Readeriella deanei (CPC 12715). a. Colony sporulating on OA; b–e. conidiogenous cells with percurrent proliferation; f. conidia. –– Scale bars = 10 μm.
Etymology. Name refers to the host from which it was isolated, Eucalyptus deanei.
Description on OA. Conidiomata pycnidial, brown, globose to subglobose, up to 250 μm diam; wall consisting of 2–3 layers of brown textura angularis. Conidiophores reduced to conidiogenous cells, or with a supporting cell. Conidiogenous cells discrete, doliiform to ampulliform, pale brown, finely verruculose, proliferating several times percurrently near apex, 5–8 × 4–6 μm. Conidia solitary, aseptate, ellipsoid to limoniform, tapering towards a bluntly rounded, subobtuse, thickened apex, base subtruncate and thickened, hyaline becoming medium to golden brown, finely verruculose, (8–)9–10(–11) × 4(–5) μm.
Culture characteristics — Colonies erumpent, spreading, with lobate, feathery margins and sparse aerial mycelium on OA and PDA; fluffy to woolly on MEA, 5 cm diam after 2 wk. On MEA surface olivaceous-grey, reverse iron-grey. On PDA and OA, surface and reverse iron-grey.
Specimen examined. AUSTRALIA, New South Wales, Wollemi National Park, on leaves of Eucalyptus deanei, 9 Feb. 2006, B. Summerell (holotype CBS H-21136, culture ex-type CPC 12715 = CBS 134746).
Notes — Morphologically similar to R. readeriellophora (conidiomata up to 130 μm diam, conidiogenous cells 8–15 × 3–4 μm, conidia (5–)6–7(–9) × (3–)4(–4.5) μm; Crous et al. 2004b). However, conidiomata of R. deanei are larger, conidiogenous cells wider and conidia longer and wider.
Readeriella limoniforma Quaedvlieg, Summerell & Crous, sp. nov. — MycoBank MB807834; Fig. 8
Fig. 8.

Readeriella limoniforma (CPC 12727). a. Colony sporulating on PDA; b, c. conidiogenous cells with percurrent proliferation; f. conidia. –– Scale bars = 10 μm.
Etymology. Name refers to its conidia, which are characteristically limoniform in shape.
Description on OA. Conidiomata pycnidial, brown, globose to subglobose, up to 150 μm diam, ostiole central, up to 60 μm diam; wall consisting of 2–3 layers of brown textura angularis. Conidiophores reduced to conidiogenous cells. Conidiogenous cells discrete, doliiform to subcylindrical, hyaline to pale brown, smooth to finely verruculose, monophialidic, proliferating several times percurrently near apex, 5–8 × 3–4 μm. Conidia solitary, aseptate, ellipsoid to limoniform, tapering towards a bluntly rounded, subobtuse, thickened apex, base subtruncate, hyaline becoming medium to golden brown, finely verruculose, (6–)7–8(–10) × 3(–4) μm.
Culture characteristics — Colonies erumpent, spreading, with lobate, feathery margins and moderate to fluffy aerial mycelium, reaching 4 cm diam after 2 wk. On MEA surface smoke-grey, outer region purplish grey, reverse fuscous-black. On PDA surface iron-grey, and pale olivaceous-grey in centre; reverse iron-grey.
Specimen examined. AUSTRALIA, New South Wales, Wollemi National Park, on leaves of Eucalyptus sp., 9 Feb. 2006, B. Summerell (holotype CBS H-21135, cultures ex-type CPC 12727–12729 = CBS 134745).
Notes — Morphologically R. limoniforma is similar to R. callista (conidia ellipsoid to fusoid, 7–11 × 3–5.5 μm; Crous et al. 2009d), but conidia are more limoniform in shape and slightly wider than those of R. callista.
Readeriella mirabiliaffinis Quaedvlieg, Summerell & Crous, sp. nov. — MycoBank MB807835; Fig. 9
Fig. 9.
Readeriella mirabiliaffinis (CPC 13611). a. Colony sporulating on PDA; c, e, g. conidiogenous cells with percurrent proliferation; b, d, f. conidia. –– Scale bars = 10 μm.
Etymology. Name refers to its similarity to R. mirabilis.
Description on OA. Conidiomata pycnidial, brown, globose, up to 300 μm diam; wall consisting of 2–3 layers of brown textura angularis. Conidiophores 0–1-septate, pale brown, finely verruculose, ampulliform to doliiform, 10–20 × 4–6 μm. Conidiogenous cells pale brown, finely verruculose, ampulliform to doliiform, proliferating several times percurrently near apex, mono- or polyphialidic, 8–10 × 4–6 μm. Conidia solitary, medium brown, aseptate, smooth, granular, base truncate, with three apical, lateral, obtuse projections, deltoid, thick-walled, with darker pigmentation in the lateral projections, but with more prominent constriction between the projections and the base, (9–)10–11(–12) μm long, (8–)9–10(–11) μm wide at apex.
Culture characteristics — Colonies spreading, erumpent with lobate, feathery margins and moderate aerial mycelium. On OA, MEA and PDA surface olivaceous-grey with patches of pale olivaceous-grey; reverse iron-grey; after 2 wk reaching 55 mm diam.
Specimen examined. AUSTRALIA, Tasmania, Tasman Peninsula, Brown Mountain walk, S43°11'13.9" E147°50'50.7", on leaves of E. delegatensis, 14 Oct. 2006, P. Summerell & B. Summerell (holotype CBS H-21134, culture ex-type CPC 13611 = CBS 134744).
Notes — Morphologically similar to R. mirabilis (conidia (7–)9–10(–11) μm long, (7–)8–9(–10) μm wide at apex), although the conidia of R. mirabiliaffinis are larger.
Suberoteratosphaeria Quaedvlieg & Crous, gen. nov. — MycoBank MB807836
Type species. Suberoteratosphaeria suberosa (Crous, F.A. Ferreira, Alfenas & M.J. Wingf.) Quaedvlieg & Crous.
Etymology. Named after its similarity to the genus Teratosphaeria and association with corky leaf spots.
Foliicolous and caulicolous, plant pathogenic. Ascomata pseudothecial, solitary or aggregated, black, superficial to subepidermal, globose, glabrous; ostiole apical, central, papillate, lined with periphyses; wall of 3–4 layers of medium brown textura angularis, subhymenium of 3–5 layers of hyaline cells. Asci fasciculate, bitunicate, aparaphysate, subsessile, 8-spored, ellipsoid to obclavate, straight or curved. Ascospores bi- to triseriate or irregularly arranged, oblique, overlapping, straight ellipsoidal, obtuse at each end, hyaline to pale brown, smooth, 1-septate, guttulate, with or without mucoid sheath. Germinating ascospores become brown and verruculose.
Notes — Suberoteratosphaeria is plant pathogenic, associated with corky leaf spots, but also on stems and leaf petioles. The genus has ascospores that are hyaline to pale brown (as found in several species of Teratosphaeria s.str.). Suberoteratosphaeria is distinguished from Teratosphaeria by its corky lesions, and less so by ascospores that become brown, verruculose and germinate by two or multiple germ tubes.
Suberoteratosphaeria pseudosuberosa (Crous & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807838
Basionym. Mycosphaerella pseudosuberosa Crous & M.J. Wingf., Stud. Mycol. 55: 118. 2006.
≡ Teratosphaeria pseudosuberosa (Crous & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 11. 2007.
Specimen examined. URUGUAY, on leaves and petioles of Eucalyptus sp., Apr. 2005, M.J. Wingfield (holotype CBS H-19695, culture ex-type CBS 118911 = CPC 12085).
Suberoteratosphaeria suberosa (Crous, F.A. Ferreira, Alfenas & M.J. Wingf.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807839
Basionym. Mycosphaerella suberosa Crous, F.A. Ferreira, Alfenas & M.J. Wingf., Mycologia 85, 4: 707. 1993.
≡ Teratosphaeria suberosa (Crous, F.A. Ferreira, Alfenas & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 11. 2007.
Specimen examined. BRAZIL, Espírito Santo, Santa Catarina, on leaves of E. dunnii, Aug. 1992, M.J. Wingfield (holotype PREM 51082, culture ex type CPC 515 = CBS 436.92).
Suberoteratosphaeria xenosuberosa Quaedvlieg, Carnegie & Crous, sp. nov. — MycoBank MB807840; Fig. 10
Fig. 10.

Suberoteratosphaeria xenosuberosa (CPC 13093). a. Colony sporulating on PDA; b. broken asci; c. ascospores. –– Scale bars = 10 μm.
Etymology. Name refers to its similarity to Suberoteratosphaeria suberosa.
Leaf spots similar to those reported for T. suberosa, corky, and erumpent. Description on PDA (homothallic). Ascomata black, erumpent, punctiform, globose, up to 150 μm diam; apical ostiole 10–15 μm diam; wall consisting of 2–3 layers of medium brown textura angularis. Asci obovoid to broadly ellipsoid, aparaphysate, fasciculate, subsessile, bitunicate, 8-spored, straight to slightly incurved, 50–75 × 10–12 μm. Ascospores bi- to triseriate, hyaline, ellipsoidal with rounded ends, medianly 1-septate, constricted at the septum, straight to slightly curved, guttulate, thick-walled, widest in middle of apical cell, (10–)11–13(–15) × (4–)4.5(–5) μm. Ascospores brown and verruculose at germination.
Culture characteristics — Colonies spreading, erumpent, with sparse aerial mycelium and feathery margins, reaching 15 mm diam after 2 mo on PDA; surface olivaceous-grey, reverse iron-grey.
Specimen examined. AUSTRALIA, Queensland, Coolabunia Plantation, Kingaroy, on E. mollucana, 14 Feb. 2004, A.J. Carnegie (holotype CBS H-21138, culture ex-type CPC 13093 = CBS 134747 = NSWF 005175).
Notes — Teratosphaeria xenosuberosa was originally identified as T. suberosa based on the similar corky leaf spots it induces on E. mollucana. Although the specimen was lost, the fungus can be described morphologically, as it is homothallic and sporulates in culture. Teratosphaeria xenosuberosa is distinguished from T. suberosa (ascospores 10–)12–16(–17) × (3–)3.5–5(–6) μm (Crous et al. 1993) by a mean ascospore length that is shorter than found in T. suberosa.
Teratosphaeria molleriana (Thüm.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007
Basionym. Sphaerella molleriana Thüm., Revista Inst. Sci. Lit. Coimbra 28: 31. 1881.
Mycosphaerella molleriana (Thüm) Lindau, Nat. Pfanzenfam. 1: 424. 1897.
= Colletogloeopsis molleriana Crous & M.J. Wingf., Canad. J. Bot. 75: 670. 1997.
Readeriella molleriana (Crous & M.J. Wingf.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
= Mycosphaerella vespa Carnegie & Keane, Mycol. Res. 102: 1275. 1998.
= Mycosphaerella ambiphylla A. Maxwell, Mycol. Res. 107: 354. 2003.
= Teratosphaeria xenocryptica Crous & M.J. Wingf., Persoonia 23: 139. 2009.
Specimens examined. AUSTRALIA, Tasmania, on leaves of E. globulus, BOT 2823 = CBS 117924 (identified as M. vespa); Western Australia, Manjimup, Boorara plantation of WACAP, E116°10' S34°45', on E. globulus, 16 Feb. 2000, A. Maxwell (holotype of M. ambiphylla, PERTH 05849608, culture ex-type CBS 110499). – CHILE, on leaves of Eucalyptus sp., 1994, M.J. Wingfield (holotype of T. xenocryptica deposited at PREM, culture ex-type CPC 355 = CBS 122905). – PORTUGAL, Lisbon, N40°00'39" W8°'2.3", 77 m, on leaves of Eucalyptus sp., 13 Oct. 2006, P.W. Crous & A.J.L. Phillips (epitype of T. molleriana, CBS H-19826, cultures ex-epitype CPC 13398 = CBS 120746, CPC 13399–13400).
Notes — Hunter et al. (2006) reduced M. vespa and M. ambiphylla to synonymy under M. molleriana (= Teratosphaeria). Based on the multigene data generated here, T. xenocryptica (Wingfield et al. 1995, Crous et al. 2009b) also falls within the variation observed in T. molleriana.
Teratosphaericola Quaedvlieg & Crous, gen. nov. — MycoBank MB807841
Type species. Teratosphaericola pseudoafricana (Crous & T.A. Cout.) Quaedvlieg & Crous.
Etymology. Named after its similarity to the genus Teratosphaeria.
Foliicolous, plant pathogenic. Ascomata pseudothecial, solitary, black, immersed becoming erumpent, globose; ostiole apical, central; wall of 2–3 cell layers of medium brown textura angularis. Asci aparaphysate, fasciculate, bitunicate, subsessile, narrowly ellipsoid to subcylindrical, slightly incurved, 8-spored. Ascospores tri- to multiseriate, overlapping, hyaline to pale brown, guttulate, thin-walled, straight to slightly curved, smooth to finely roughened, fusoid-ellipsoidal with subobtuse ends, medianly 1-septate. Spermatogonia similar to the ascomata in morphology. Spermatia hyaline, smooth, rod-shaped with rounded ends.
Notes — Teratosphaericola is similar to Teratosphaeria in morphology, and can only be distinguished based on DNA phylogeny. Ascospores become darkened and verruculose at germination, but this is also known for several species of Teratosphaeria. Either ITS or LSU sequence data differentiate these genera.
Teratosphaericola pseudoafricana (Crous & T.A. Cout.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807842
Basionym. Mycosphaerella pseudoafricana Crous & T.A. Cout. (as pseudafricana), Stud. Mycol. 55: 115. 2006.
≡ Teratosphaeria pseudoafricana (Crous & T.A. Cout.) Crous & U. Braun, Stud. Mycol. 58: 11. 2007.
Specimen examined. ZAMBIA, on leaves of E. globulus, Aug. 1995, T. Coutinho (holotype PREM 54973, culture ex-type CPC 1229, 1231, 1230 = CBS 114782).
Teratosphaeriopsis Quaedvlieg & Crous, gen. nov. — MycoBank MB807843
Type species. Teratosphaeriopsis pseudoafricana Quaedvlieg & Crous.
Etymology. Named after its morphological similarity to the genus Teratosphaeria.
Foliicolous, plant pathogenic. Ascomata black, erumpent, globose, solitary or in clusters of up to three, with papillate apex and central ostiole; wall consisting of 2–3 layers of medium brown textura angularis. Asci obovoid to broadly ellipsoid, aparaphysate, fasciculate, subsessile, bitunicate, 8-spored, straight to slightly incurved. Ascospores tri- to multiseriate, hyaline, obovoid with rounded ends, medianly 1-septate, slightly constricted at the septum, straight to slightly curved, guttulate, thin-walled, widest in middle of apical cell; ascospores brown and verruculose at germination.
Notes — Teratosphaeriopsis is best distinguished from Teratosphaeria based on phylogenetic data, as several species in Teratosphaeria are morphologically similar.
Teratosphaeriopsis pseudoafricana Quaedvlieg & Crous, sp. nov. — MycoBank MB807844; Fig. 11
Fig. 11.

Teratosphaeriopsis pseudoafricana(CBS 111171). a. Colony sporulating on PDA; b, c. ascomata; c–e. asci with ascospores. –– Scale bars: a = 250 μm; b = 120 μm; c–e = 10 μm; d applies to e.
Etymology. Name refers to its morphological similarity to M. africana.
Description on OA (homothallic). Ascomata black, erumpent, globose, solitary or in clusters of up to three, up to 120 μm diam, with papillate apex and central ostiole; wall consisting of 2–3 layers of medium brown textura angularis. Asci obovoid to broadly ellipsoid, aparaphysate, fasciculate, subsessile, bitunicate, 8-spored, straight to slightly incurved; apical chamber 1.5–2 μm diam, 25–50 × 8–10 μm. Ascospores tri- to multiseriate, hyaline, obovoid with rounded ends, medianly 1-septate, slightly constricted at the septum, straight to slightly curved, guttulate, thin-walled, widest in middle of apical cell, (8–)9(–10) × (3–)3.5(–4) μm. Ascospores brown and verruculose at germination.
Culture characteristics — Colonies on OA iron-grey, spreading with moderate aerial mycelium in centre. On MEA and PDA erumpent, spreading, with folded surface, and moderate aerial mycelium, and even, lobed margin; centre olivaceous-grey, outer region iron-grey, reverse iron-grey; reaching 40 mm diam after 1 mo.
Specimen examined. SOUTH AFRICA, KwaZulu-Natal, on leaves of Eucalyptus sp., 23 Nov. 1995, P.W. Crous (holotype CBS H-21137, culture ex-type CBS 111171 = CPC 1261).
Notes — Teratosphaeriopsis pseudoafricana was originally identified as Amycosphaerella africana (= Mycosphaerella africana) based on morphology. Phylogenetically it is distinct from the taxa presently known to occur on eucalypts. Although the specimen has been lost, the fungus can still be described morphologically, as it is homothallic and sporulates in culture. Ascospores of T. pseudoafricana are obovoid, and shorter and wider than those of Amycosphaerella africana, which are fusoid-ellipsoidal, (7–)8–10(–11) × (2–)2.5–3 μm (Crous & Wingfield 1996).
Xenopenidiella Quaedvlieg & Crous, gen. nov. — MycoBank MB807845
Type species. Xenopenidiella rigidophora (Crous, R.F. Castañeda & U. Braun) Quaedvlieg & Crous.
Etymology. Named after the genus Penidiella, but distinct in having dimorphic conidiophores.
Hyphomycetous, saprobic on leaf litter. Mycelium consisting of strongly branched, septate, smooth, pale olivaceous to medium brown, guttulate, hyphae. Conidiophores dimorphic. Macronematous conidiophores separate, erect, subcylindrical, predominantly straight to slightly curved, terminally loosely branched; base neither lobed nor swollen, lacking rhizoids, septate, medium to dark brown. Micronematous conidiophores erect, subcylindrical, septate, pale to medium brown (concolorous with hyphae). Conidiogenous cells predominantly terminal, rarely intercalary, medium brown, smooth, subcylindrical, but frequently swollen at apex, loci flat-tipped, sub-denticulate or not, barely to slightly thickened and darkened-refractive. Conidia in branched chains, medium brown, verruculose, ellipsoid to cylindrical-oblong, turning dark with age; hila sometimes slightly thickened and darkened, not refractive.
Notes — Xenopenidiella is superficially similar to Penidiella, but distinct in that conidiophores are dimorphic, not truly penicillate (rather loosely branched at apex), and conidiogenous cells often appear subdenticulate.
Xenopenidiella rigidophora(Crous, R.F. Castañeda & U. Braun) Quaedvlieg & Crous, comb. nov. — MycoBank MB807846
Basionym. Penidiella rigidophora Crous, R.F. Castañeda & U. Braun, Stud. Mycol. 58: 21. 2007.
Specimen examined. CUBA, isolated from leaf litter of Smilax sp. (Smilacaceae), 6 Nov. 1994, R.F. Castañeda (holotype CBS H-19938, culture ex-type CBS 314.95).
XenoteratosphaeriaQuaedvlieg & Crous, gen. nov. — MycoBank MB807847
Type species. Xenoteratosphaeria jonkershoekensis (P.S. van Wyk, Marasas & Knox-Dav.) Quaedvlieg & Crous.
Etymology. Resembling the genus Teratosphaeria, but with distinct culture characteristics.
Foliicolous, plant pathogenic. Ascomata immersed, substomatal, black, singular, gregarious, immersed, becoming erumpent through the stomatal pore, pyriform or globose with a papillate periphysate ostiole. Asci obclavate, straight, subsessile or with a small pedicel, narrowing slightly to a rounded apex with a distinctive ocular chamber, 8-spored, bitunicate with fissitunicate dehiscence. Ascospores bi- to multiseriate, fusiform, tapering gradually to the rounded ends, widest in the middle of the upper cell, with the lower cell slightly narrower and longer, straight, hyaline, becoming pale brown with age, medianly septate.
Notes — Xenoteratosphaeria is morphologically similar to Teratosphaeria (also with ascospores becoming brown and verruculose in asci), but distinct in that in culture hyphae terminate in brown, multicellular chlamydospore-like structures, not observed in Teratosphaeria s.str. (see Crous et al. 2000, f. 18, 19, 25).
Xenoteratosphaeria jonkershoekensis (P.S. van Wyk, Marasas & Knox-Dav.) Quaedvlieg & Crous, comb. nov. — MycoBank MB807848
Basionym. Mycosphaerella jonkershoekensis P.S. van Wyk, Marasas & Knox-Dav., S. African J. Bot. 41: 234. 1975.
≡ Teratosphaeria jonkershoekensis (P.S. van Wyk, Marasas & Knox-Dav.) Crous & U. Braun, Stud. Mycol. 58: 10. 2007.
Specimen examined. SOUTH AFRICA, Western Cape Province, Jonkershoek, S33°59'4.2" E18°57'16.1", on living leaves of Protea sp., 1 Apr. 2007, P.W. Crous & L. Mostert (epitype CBS H-20095, culture ex-epitype CBS 122897 = CPC 13984).
DISCUSSION
The genus Mycosphaerella s.l. is one of the largest genera of ascomycetes with thousands of species (Crous 2009). However, the Mycosphaerella morphology evolved in many lineages independently, and the separation of the Teratosphaeriaceae from the Mycosphaerellaceae (Crous et al. 2007a) was an important step towards delimitation of taxa within the Mycosphaerella complex.
Mycosphaerella Leaf Disease
Mycosphaerella Leaf Disease is a serious impediment for the cultivation of eucalypts worldwide (Crous et al. 2009d, Hunter et al. 2011). Throughout the years numerous species of Mycosphaerellaceae and Teratosphaeriaceae have been described from eucalypt leaves, several of which have been associated with MLD and TLD. The present study provides a multigene DNA comparison of more than 146 taxa isolated from eucalypt leaves, and is the most comprehensive multigene DNA phylogeny generated to date for these fungi, following a previous study by Hunter et al. (2006). Numerous species examined here were originally described without isolation or preservation of ex-type strains, and consequently had to be recollected to enable DNA comparisons. Even though partial gene sequences of the ITS and LSU loci have been obtained for many of these fungi in recent years comprehensive multigene phylogenetic comparisons have mostly been lacking.
Lineages within the Teratosphaeriaceae
Schoch et al. (2006) placed the Piedraiaceae in the Dothideomycetes, and Crous et al. (2009b) showed it clustered within the Teratosphaeriaceae. Ruibal et al. (2011) discussed this placement in depth and suggested that it was possibly due to long branch attraction and poor taxon sampling (these long branches are clearly visible in Fig. 3 derived from our LSU/RPB2 dataset). Although we have been unable to resolve the placement of the Piedraiaceae in the present study, we still regard it as a separate family based on its unique morphology and ecology. Furthermore, the Piedraiaceae clade was the only unstable clade in this dataset; e.g. it clustered as sister to different clades within the Teratosphaeriaceae depending on the addition/deletion of additional families to the dataset (results not shown) and was the only Teratosphaeriaceae-associated clade which actually clustered outside of the Teratosphaeriaceae while running preliminary Neighbour joining trees on our LSU/RPB2 dataset (results not shown). We await further insights on the correct placement of the Piedraiaceae, which appears to be sensitive to sampling and different algorithms used for phylogenetic reconstruction.
Not all extremophiles could previously be accommodated in the Teratosphaeriaceae as some isolates clustered in closely related, but undescribed, separate families. Ruibal et al. (2009) resorted to referring to these rock-inhabiting isolates as being members of Teratosphaeriaceae (‘clade 2’). Although the introduction of the Neodevriesiaceae and Extremaceae (Fig. 5) within the present study provide families for many of these extremophilic genera, the resulting Teratosphaeriaceae LSU/RPB2 tree (Fig. 3) is still not fully resolved. Overall, these results underline the fact that the Teratosphaeriaceae (Fig. 3) is still too broadly defined. A more robust dataset is needed to address this issue, within the wider context of what is now seen as the Capnodiales.
With the narrow circumscriptions of Ramularia (= Mycosphaerella) and Teratosphaeria (= Kirramyces), 23 novel genera have to be introduced to accommodate other monophyletic lineages in this complex. Although the present study presents a sound road map for future work on the Teratosphaeriaceae, it also illustrates that we are approaching the limits of purely morphology-based classification for species and genera within the Mycosphaerellaceae and Teratosphaeriaceae. Several genera that are readily identifiable based even on a single locus, are virtually impossible to distinguish by morphological means (e.g. Parateratosphaeria and Teratosphaeria) and this will pose problems for forest pathologists wanting to identify these taxa in the field.
Best genes to distinguish species in Mycosphaerellaceae and Teratosphaeriaceae
From the DNA sequence data we conclude that any of the five coding loci tested in this study (Btub, Act, RPB2, EF-1α and Cal) will reliably identify most of the species studied. The only exception was species of Pseudocercospora, which were difficult to identify based on a single locus, although this had already been demonstrated (Crous et al. 2013). The Act, Cal and Btub genes were incongruent with the other loci in the two five-locus datasets. However, this does not exclude these genes as barcoding loci for species identification within the MLD and TLD complexes, as these loci resolve the terminal clades in their derived trees, if not their higher order clustering. These ‘aberrant’ loci should not be combined with other loci within these two datasets, if the intention is to draw taxonomic conclusions about the relationships of these species to one another. This incongruency can be caused by several factors, including differing rates of evolution, and different selection pressures.
As none of the coding gene loci had a 100 % amplification success rate, none of these loci alone are ideal for species identification in a generic protocol. The two loci that did have a 100 % success rate (LSU and ITS) lack species resolution power for a large number of species, and are thus not independently reliable as an identification tool. The Btub and EF-1α loci have the highest Kimura-2-parameter distances, with RPB2 in the third place (i.e. they show the highest natural variation between species) for the species used in this dataset, but these loci have the disadvantage that they only have amplification success rates of 97, 98 and 95 %, respectively (Table 3).
To compensate for both this lack of amplification success and the limited amount of available reference data for these protein coding loci in public databases, we recommend a combination of a primary and a secondary locus to provide a more reliable identification result. The ITS locus is a prime candidate as the primary locus as the ITS locus has recently been proposed as the primary fungal barcoding locus (Schoch et al. 2012), and ITS sequence data are easily obtained and are a good starting point to rapidly identify genera and often species. If an unknown genus or species is not represented in a curated database such as Q-bank (www.q-bank.eu), then GenBank should be used to supplement the data. As a secondary identification locus, either Btub, EF-1α or even RPB2, suffice for many species of Mycosphaerellaceae or Teratosphaeriaceae. We recommend EF-1α, followed by Btub and then RPB2, as the most effective way of identifying many species within these genera. As with all molecular-based identification approaches, care needs to be taken with the interpretation of results arising from such analyses, as many mistakes occur in uncurated public nucleotide databases such as GenBank.
Species concepts within the fungal kingdom
Ever since Darwin (1859) published his species concept in ‘On the Origin of Species’, scientists have been struggling with how to define and recognise species, i.e., when has a lineage diverged far enough to be considered a species. Numerous authors have since considered a multitude of taxonomic characters as essential elements to define novel species. Authors com-monly disagree about species numbers and species boundaries. Species delimitation and conceptualisation has become increasingly confused by disagreements about species concepts (de Queiroz 2007, Costello et al. 2013).
Some of the more ambiguous phylogenetic conclusions in the present study demonstrate the problems experienced when defining species. For example, Fig. 1, clade C reveals that the four tested T. gauchensis isolates (Cortinas et al. 2006) have extensive natural variation within the seven loci tested, which causes them to overlap with two other, morphologically distinct species, T. stellenboschiana and T. foliensis. Does this mean that these eight Teratosphaeria isolates belong to one, two or more different taxa?
Traditionally, five previously described species concepts have been used in mycology to distinguish taxa. The Biological Species Concept (BSC) emphasizes reproductive isolation (Wright 1940, Mayr 1942), the Morphological Species Concept (MSC) emphasizes morphological divergence, the Ecological Species Concept (ESC) emphasizes adaptation to a particular ecological niche (van Valen 1976), the Phylogenetic Species Concept (PSC) emphasizes nucleotide (non) divergence (Hennig 1966) and the Genealogical Concordance Phylogenetic Species Recognition (GCPSR) (an adaptation of the PSC) uses the phylogenetic concordance of unlinked genes to indicate a lack of genetic exchange and thus, evolutionary independence of lineages (O’Donnell et al. 1998, Taylor et al. 2000, Dettman et al. 2003a, 2003b, de Queiroz 2007).
During the last decade a sixth, polyphasic approach to species recognition has evolved within the mycological community. This polyphasic method grades the MSC, ESC and PSC characteristics with a variable weight in order to reach a conclusion on the proposition that a taxon represents a separate species. Conclusions based on the molecular similarity between different taxa in a robust multi-locus DNA dataset (PSC) are generally unbiased and warrant a high weight in any CSC analysis conclusion. Differences in morphology (MSC) and ecology (ESC) are given less weight in reaching a CSC conclusion. This approach has become generally accepted during the last decade as a functional species concept within the mycological community, without ever officially having been described as such (Frisvad & Samson 2004, Crous & Groenewald 2005, Samson et al. 2006, Leslie & Summerell 2006, Cai et al. 2009, Groenewald et al. 2013). To remedy this, we propose to formally name this widely used, polyphasic method for identifying species within the fungal kingdom, as the Consolidated Species Concept (CSC) (derived from a discussion with Keith Seifert about how to describe the polyphasic identification approach at the ‘One Fungus = Which Name’ symposium, held in Amsterdam in April 2012).
Even with the use of these six species concepts, successfully distinguishing between two or more closely related taxa can still be daunting and open to debate. The generated phylogenetic trees (Fig. 1, 2, 3, 4) show several of these closely related isolates (clades A–K) that have previously been identified as belonging to different taxa. These clades will therefore be discussed in more detail under the listed species concepts.
As we did not perform mating compatibility tests on this dataset, we have no data regarding the BSC concept for most of these isolates. However, we can discuss the implications of the five remaining species concepts (MSC, ESC, PSC, GCPSR and CSC) on this dataset.
Different conclusions can be drawn about speciation, when applying these five species concepts individually to clade C (Fig. 1). Clade C contains seven isolates that were previously identified as either one of two closely related Teratosphaeria species (T. gauchensis or T. stellenboschiana). Each one of these two species has a distinct morphology (Crous et al. 2004b, 2009a, Andjic et al. 2010), was isolated from a different host (E. grandis and E. punctata) and collected from different continents (Africa and South America). So, according to both the MSC and the ESC concepts, there is very good support for the proposition that they should be regarded as separate species. However, the PSC concept is inconclusive in this case as the four T. gauchensis isolates show a wide genetic drift while the T. stellenboschiana isolates are relatively conserved.
When applying the GCPSR concept to this dataset, the taxa within this dataset are tested for genetic exchange to indicate their evolutionary independence (a pairwise homoplasy index (PHI or Φw) score below 0.05 is considered proof for the presence of significant recombination within the dataset). The GCPSR test revealed that there was no significant genetic recombination within this dataset (Φw = 0.1) (Fig. 6c). There are still common (but not significant) recombination events present within this dataset, as is apparent by the relative low Φw and the conflicting phylogenetic splits (another indicator of recombination) observed in the split tree decomposition network for the T. gauchensis and T. stellenboschiana isolates (Fig. 6c). According to the GCPSR species concept, there is no support for the proposition that these isolates belong to the same species, as there was no significant recombination between T. gauchensis and T. stellenboschiana.
When applying the CSC concept to clade C, we can take into account that the phylogenetic data regarding T. stellenboschiana and T. gauchensis is ambiguous as the variation within the T. gauchensis isolates more or less overlaps with the T. stellenboschiana isolates, but the ecological and morphological criteria support the proposition that these isolates belong to two distinct taxa. So when combining the MSC, ESC and PSC characteristics into a CSC conclusion on speciation, we can conclude that there is good support for the proposition that these isolates actually belong to two distinct taxa.
We can now also apply the CSC concept to the rest of the clades, marked A to K, in Fig. 1 and 2.
Clade A
contains 12 isolates previously identified as either belonging to closely related Teratosphaeria nubilosa or T. pseudonubilosa (including the ex-type of T. nubilosa, CBS 116005) and were isolated from either Eucalyptus globulus or Eucalyptus sp. hosts from the same continent (Australia). These two species show very little morphological variation and cannot be separated by morphological characteristics. Differentiation of these species is based on SNPS in 29, seperatly anaysed gene regions, and on four nucleotide characters in the ITS and six nucleotides in the Btub loci (Pérez et al. 2013). These two species are phylogenetically distinct over the five test loci (Fig. 1) (which also includes the ITS and Btub loci). When applying the GCPSR concept to these 12 isolates, we detect no significant recombination events shared between these isolates (Φw = 0.07) (Fig. 6a). This lack of significant recombination does not mean that there are no shared recombination events. As the Φw value approximates 0.05, this indicates that there are some shared insignificant recombination events between these isolates. This example also shows the limitations of the GCPSR concept, which looks for significant recombination events in a black and white way, ignoring borderline cases. When applying the CSC concept to clade A, we conclude that there is reasonable support for the proposition that these isolates belong to different taxa even as the morphological and ecological criteria are inconclusive as we have a clear phylogenetic separation between these two Teratosphaeria taxa.
Clade B
contains three isolates that were previously classified as either closely related to T. destructans (ex-type CBS 111370) or T. viscidus (ex-type CBS 124992), which were isolated from either Eucalyptus grandis or E. nitens, from two different continents (Indonesia and Australia). These two species can be separated by morphological characteristics (Andjic et al. 2007). Both species are phylogenetically (Fig. 1) distinct over the five test loci and when applying the GCPSR concept to these isolates, we did not detect significant recombination between the isolates (Φw = 1) (Fig. 6b). Because the Φw test requires a minimum of four isolates, an isolate of T. eucalypti was added to this dataset. When applying the CSC concept to clade B, we can take into account that the MSC, ESC and PSC characteristics all support the two species proposition so we conclude that there is full support for the proposition that T. destructans and T. viscidus represent two different taxa.
Clade D
contains two isolates that were previously identified as either belonging to the closely related T. pluritubularis and T. profusa (including the respective ex-type isolates CBS 118508 and CBS 125007; Crous et al. 2006), which were isolated from either E. globulus or E. nitens from different continents (Spain and Australia). Both species have distinct morphological variation and can be separated based on morphological characteristics (Crous et al. 2009b). These two species are phylogenetically (Fig. 1D) very closely related but distinct over the five test loci. However, when applying the GCPSR concept to these isolates, we detect significant recombination between these isolates (Φw = < 0.001) (Fig. 6d). To obtain a minimum of four isolates, isolates of T. complicata and T. caesia were added to this dataset. Multiple combinations of closely related Teratosphaeria species were tested, but only the combinations that included both the T. pluritubularis and T. profusa isolates showed significant recombination in their Φw (results not shown). When applying the CSC concept to clade D, the MSC, ESC and PSC characteristics all support the two species proposition so we conclude that there is full support for the proposition that T. pluritubularis and T. profusa represent two different taxa. These results conflict, as we have two morphologically and ecologically distinct taxa that have very strong and recent family ties (as shown by the GCPSR test results). It is possible that these two species recently underwent speciation and that the loci selected for molecular comparison have not evolved sufficiently individually to provide higher phylogenetic support.
Clade E
contains eight isolates that were previously identified as Austroafricana parva (= T. parva) based on limited morphology and ITS sequence data. Strains were isolated from both Eucalyptus and Protea hosts located on three different continents (Australia, Egypt, Portugal, South Africa). Although these isolates are morphologically very similar and have a high degree of conservation in their ITS sequences, they are phylogenetically very distinct over the five test loci and even form four to five subclades (indicating that this might actually be a species complex). When applying the GCPSR concept to these isolates, we detect significant recombination between these isolates (Φw = < 0.001) (Fig. 6e). Multiple combinations of these eight isolates were tested and significant recombination was detected within two separate groups. Group one consists of CBS 119901, 116289, 122892 and CPC 12249, while group two consists of CBS 122893 and 114761 (results not shown). These results correspond to the phylogenetic tree (Fig. 1E) in which the isolates within these two groups are closely related. When applying the CSC concept to clade E, we see only limited (MSC) support for the single species proposition and much stronger (ESC and PSC) support for the proposition that these isolates actually represent four to five different taxa. But more detailed morphological future work is needed to confirm this proposition.
Clade F
contains six isolates that had previously been identified as Austroafricana associata (= A. associata) based on limited morphological characters and ITS sequence data. These isolates were isolated from different Eucalyptus and Corymbia hosts in Australia and they are phylogenetically highly distinct over the five test loci, and even form five to six subclades (indicating that this might actually be a species complex). When applying the GCPSR concept to these isolates, we detect significant recombination between these isolates (Φw = < 0.001) (Fig. 6f). Multiple combinations of these six isolates were tested and this significant recombination was limited between two isolates (CBS 112224 and CPC 13113) (results not shown). When applying the CSC concept to clade F, we see only limited (MSC) support for the single species proposition and much stronger (ESC and PSC) support for the proposition that these isolates actually represent five or six different taxa. But more detailed morphological future work is needed to confirm this proposition.
Clade G
contains two isolates that had previously been identified as Pseudoteratosphaeria parkiiaffinis (ex-type CBS 120737) or Pet. stramenticola (ex-type CBS 118506). Both strains were isolated from Eucalyptus hosts (E. urophylla and Eucalyptus sp.) from South America (Venezuela and Brazil). Both species are morphologically similar to one another (Crous et al. 2006, 2007c), and are phylogenetically indistinguishable over the five test loci (Fig. 1). When applying the GCPSR concept to these isolates, we detect significant recombination between these two isolates (Φw = 0.03) (Fig. 6g). Because the Φw test requires a minimum of four isolates, isolates of Pet. perpendicularis and Pet. gamsii were added to this dataset. Multiple combinations of closely related Pseudoteratosphaeria species were tested, but only the combinations that included both the Pet. parkiiaffinis and Pet. stramenticola isolates showed significant recombination in their Φw (results not shown). When applying the CSC concept to clade G, we get full support for the proposition that these isolates actually belong to the same taxon. The CSC data suggests that these two isolates actually belong to the same taxon and this could be confirmed with more detailed morphological work and these species are subsequently synonymised.
Clade H
contains six isolates that were previously identified as either belonging to closely related Pallidocercospora thailandica (ex-type CBS 120723) or P. colombiensis (ex-type CBS 110967). All P. colombiensis isolates where isolated from E. urophylla in Colombia while the P. thailandica isolates had a mixed host range from Acacia and Musa to E. camaldulensis in Thailand, Brazil and Cameroon. Both species are morphologically distinct (Crous et al. 2004c) but are phylogenetically difficult to distinguish over the five tested loci (Fig. 2H). When applying the GCPSR concept to these isolates, we detect no significant recombination among these isolates (Φw = 1.0) (Fig. 6h). When applying the CSC concept to clade H, we see no support for the single species proposition and stronger (ESC and MSC) support for the proposition that these isolates indeed represent two different taxa.
Clade I
contains three isolates previously identified as either closely related (Crous et al. 2013) Pseudocercospora fori (ex-type CBS 113285) or Ps. natalensis (ex-type CBS 111069). Both taxa were described from Eucalyptus species (E. grandis and E. nitens) collected in South Africa. Morphologically, they are distinguishable based on the number of conidial septa (Crous 1998, Hunter et al. 2004) but phylogenetically they are difficult to distinguish over the five tested loci (Fig. 2i). Application of the GCPSR concept, showed no significant recombination (Φw = 0.11) (Fig. 6i). Because the Φw test requires a minimum of four isolates, an isolate of Ps. subulata was added to this dataset. When applying the GCPSR concept to clade I, we see no support for the single species proposition and good support (ESC, PSC and MSC) for the proposition that these isolates indeed represent two different taxa.
Clade J
contains 24 isolates that were previously identified as either belonging to Pseudocercospora gracilis (ex-type CBS 111189) or Ps. eucalyptorum (ex-type CBS 114866). Both species were described from several Eucalyptus hosts. While Ps. eucalyptorum occurs in Europe, Africa and Australia, Ps. gracilis is only known from South-East Asia. The two species are morphologically distinct based on differences in their conidial morphology (Crous et al. 1989, Crous & Alfenas 1995) and also phylogenetically distinguishable over the five tested loci (Fig. 2J). When applying the GCPSR concept to these isolates, we detect no significant recombination between these isolates (Φw = 0.8) (Fig. 6j). When applying the CSC concept to clade J, we see full (MSC, ESC and PSC) support for the two species, so we conclude that there is full support for the proposition that P. eucalyptorum and P. gracilis represent two different taxa.
Clade K
contains 12 isolates previously identified as Zasmidium citri based on limited morphology and ITS sequence data. These isolates where isolated from a mixed host range (Acacia, Musa, Citrus and Eucalyptus) from both South-East Asia and North America. These isolates are phylogenetically distinct over the five test loci and even form five to six subclades (indicating that this is actually a species complex) (Fig 2K). When applying the GCPSR concept to these 12 isolates, we detect significant recombination between these isolates (Φw = < 0.001) (Fig. 6k). However, Φw testing of multiple isolate combinations within the 12 species dataset showed that the significant recombination in the pairwise homoplasy index were limited to four isolates most likely comprising two separate species (CPC 15289 / CPC 15296 and CPC 10522 / CBS 116366) (data not shown). When applying the CSC concept to clade K, we only see low (MSC) support for the proposition that these isolates actually belong to the same taxon, and much higher (PSC and ESC) support for the proposition that these isolates actually belong to the different taxa, but more detailed morphological work is needed to confirm this proposition.
In the present study we introduced the Consolidated Species Concept to distinguish species of Teratosphaeriaceae identified via a polyphasic approach, combining morphological, ecological and phylogenetic species concepts. We also tried to provide a better phylogenetic backbone for the Teratosphaeriaceae, which contains numerous plant and human pathogens, but also saprobes, endophytes, and rock-inhabiting fungi. Although we were able to introduce the Extremaceae and Neodevriesiaceae to accommodate a group of extremophilic fungi that occur on a range of diverse substrates, we were unable to resolve the phylogenetic position of the Piedraiaceae in relation to the Teratosphaeriaceae. At a generic level, Mycosphaerella and Teratosphaeria are now well defined, with an additional 23 genera being introduced for distinct phylogenetic lineages. Many lineages remain yet unresolved and are treated as either Teratosphaeria sp. or Teratosphaeriaceae, awaiting further collections to hopefully add additional morphological characters to these unnamed generic clades, many which remain poorly understood, and greatly undersampled.
Acknowledgments
We thank the technical staff, Arien van Iperen (cul-tures) and Marjan Vermaas (photographic plates) for their invaluable assistance. Numerous forest pathologists and mycologists have made material available to us for examination, without which this study would not have been possible.
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