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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2015 Jan 1;71(Pt 1):o39–o40. doi: 10.1107/S2056989014026851

Crystal structure of 4-chloro-N-[2-(piperidin-1-yl)eth­yl]benzamide monohydrate

K Prathebha a, D Reuben Jonathan b, B K Revathi a, S Sathya a, G Usha a,*
PMCID: PMC4331843  PMID: 25705496

Abstract

In the title compound, C14H19ClN2O2·H2O, the piperdine ring adopts a chair conformation. The dihedral angle between the mean plane of the piperidine ring and that of the phenyl ring is 41.64 (1)°. In the crystal, mol­ecules are linked by O—H⋯N, N—H⋯O and C—H⋯O hydrogen bonds involving the water mol­ecule, forming double-stranded chains propagating along [010].

Keywords: crystal structure, piperidine, benzamide, monohydrate, hydrogen bonding

Related literature  

For the synthesis of the title compound, see: Prathebha et al. (2013, 2014). For the biological activities of piperdine derivatives, see: Pandey & Chawla (2012); Jayalakshmi & Nanjundan (2008); Parthiban et al. (2005); Aridoss et al. (2008); Ramachandran et al. (2011). For related structures, see: Prathebha et al. (2014); Ávila et al. (2010); Al-abbasi et al. (2010).graphic file with name e-71-00o39-scheme1.jpg

Experimental  

Crystal data  

  • C14H19ClN2O·H2O

  • M r = 284.78

  • Monoclinic, Inline graphic

  • a = 14.9115 (6) Å

  • b = 6.6899 (3) Å

  • c = 15.6215 (7) Å

  • β = 102.956 (2)°

  • V = 1518.67 (11) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.25 mm−1

  • T = 293 K

  • 0.25 × 0.23 × 0.20 mm

Data collection  

  • Bruker Kappa APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2004) T min = 0.939, T max = 0.951

  • 12566 measured reflections

  • 3780 independent reflections

  • 1953 reflections with I > 2σ(I)

  • R int = 0.036

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.051

  • wR(F 2) = 0.160

  • S = 1.01

  • 3780 reflections

  • 181 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.28 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2004); cell refinement: SAINT (Bruker, 2004); data reduction: XPREP in SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009) and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989014026851/su5034sup1.cif

e-71-00o39-sup1.cif (23.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014026851/su5034Isup2.hkl

e-71-00o39-Isup2.hkl (179.5KB, hkl)

Supporting information file. DOI: 10.1107/S2056989014026851/su5034Isup3.cml

. DOI: 10.1107/S2056989014026851/su5034fig1.tif

The mol­ecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.

b . DOI: 10.1107/S2056989014026851/su5034fig2.tif

A view along the b axis of the crystal packing of the title compound. The dashed lines indicate the hydrogen bonds (see Table 1 for details; C-bound H atoms have been omitted for clarity).

CCDC reference: 1038084

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (, ).

DHA DH HA D A DHA
O1WH1WAN1i 0.83(2) 2.03(2) 2.851(3) 174(2)
N2H2O1W 0.86 2.06 2.855(2) 153
C6H6BO1W 0.97 2.59 3.406(3) 142

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank Professor D. Velmurugan, Centre for Advanced Study in Crystallography and Biophysics, University of Madras, for providing data-collection facilities.

supplementary crystallographic information

S1. Comment

The piperidine derivatives were reported to have antimicrobial activity. Piperidine derivatives have been synthesized for pharmaceutical research as they are very efficient against resistance microorganisms. The substituted piperidine derivatives were also reported to have antimicrobial activity (Pandey & Chawla, 2012; Jayalakshmi & Nanjundan, 2008; Parthiban et al., 2005; Aridoss et al., 2008; Ramachandran et al. 2011).

In the title compound, Fig. 1, the piperidine ring is cis to the phenyl ring. The C—N distances [1.335 (2) - 1.464 (2) Å] are in the normal range and are in good agreement with values of from similar structures (Ávila et al., 2010; Prathebha et al., 2014). The bond angle sum around atoms N1 and N2 [333.2 (4)° and 359.97 (1)°, respectively] shows sp3 hybridization. The C═O distance [1.231 (2) Å] is comparable with the value reported previously (Al-abbasi et al., 2010). The piperdine ring adopts a chair conformation with puckering parameters of q2 = 0.6994 (0) Å, φ2 = 88.60 (0)° q3 = -0.0267 (0) Å, QT = 0.6999 Å and θ2 = 92.19 (2)°.

In the crystal, adjacent molecules are linked by O-H···N, O-H···O and C-H···O hydrogen bonds, involving the water molecule, forming double stranded chains propagating along [010]; see Table 1 and Fig. 2

S2. Experimental

The title compound was synthesized following a publish procedure (Prathebha et al., 2013, 2014). In a 250 mL round-bottomed flask 120 mL of ethylmethylketone was added to 1,2-aminoethylpiperidine (0.02 mol) and stirred at room temperature. After 5 min triethylamine (0.04 mol) was added and the mixture was stirred for 15 min. Then 4-chlorobenzoylchloride (0.04 mol) was added and the reaction mixture was stirred at room temperature for ca. 2 h. A white precipitate of triethylammoniumchloride was formed. It was filtered and the filtrate was evaporated to give the crude product. It was recrystallized twice from ethylmethylketone (yield: 82%) giving colourless block-like crystals of the title compound.

S3. Refinement

The water H atoms were located in a difference Fourier map and freely refined. The NH and C-bound H atoms were positioned geometrically and treated as riding on their parent atoms: C—H = 0.93 - 0.97 Å, N—H = 0.86 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and = 1.2Ueq(N,C) for other H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

A view along the b axis of the crystal packing of the title compound. The dashed lines indicate the hydrogen bonds (see Table 1 for details; C-bound H atoms have been omitted for clarity).

Crystal data

C14H19ClN2O·H2O F(000) = 608
Mr = 284.78 Dx = 1.245 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 3780 reflections
a = 14.9115 (6) Å θ = 1.7–28.4°
b = 6.6899 (3) Å µ = 0.25 mm1
c = 15.6215 (7) Å T = 293 K
β = 102.956 (2)° Block, colourless
V = 1518.67 (11) Å3 0.25 × 0.23 × 0.20 mm
Z = 4

Data collection

Bruker Kappa APEXII CCD diffractometer 3780 independent reflections
Radiation source: fine-focus sealed tube 1953 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.036
ω and φ scan θmax = 28.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2004) h = −19→19
Tmin = 0.939, Tmax = 0.951 k = −8→7
12566 measured reflections l = −20→20

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160 H atoms treated by a mixture of independent and constrained refinement
S = 1.01 w = 1/[σ2(Fo2) + (0.0714P)2 + 0.2535P] where P = (Fo2 + 2Fc2)/3
3780 reflections (Δ/σ)max < 0.001
181 parameters Δρmax = 0.28 e Å3
2 restraints Δρmin = −0.21 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1W 0.36430 (12) −0.0064 (2) 0.33083 (13) 0.0544 (4)
H1WA 0.3601 (17) −0.005 (4) 0.2772 (11) 0.062 (8)*
H1WB 0.3987 (15) 0.082 (3) 0.3533 (15) 0.064 (8)*
C1 0.13069 (15) −0.6539 (4) 0.39904 (16) 0.0561 (6)
H1A 0.1347 −0.6240 0.4605 0.067*
H1B 0.1773 −0.7528 0.3957 0.067*
C2 0.03637 (15) −0.7388 (4) 0.35887 (18) 0.0671 (7)
H2A 0.0342 −0.7795 0.2988 0.081*
H2B 0.0257 −0.8563 0.3916 0.081*
C3 −0.03859 (16) −0.5866 (4) 0.35964 (18) 0.0682 (7)
H3A −0.0428 −0.5605 0.4197 0.082*
H3B −0.0973 −0.6390 0.3279 0.082*
C4 −0.01743 (15) −0.3941 (4) 0.31710 (18) 0.0665 (7)
H4A −0.0223 −0.4163 0.2549 0.080*
H4B −0.0621 −0.2930 0.3234 0.080*
C5 0.07842 (15) −0.3203 (4) 0.35883 (17) 0.0610 (7)
H5A 0.0910 −0.1994 0.3293 0.073*
H5B 0.0817 −0.2878 0.4200 0.073*
C6 0.24037 (14) −0.3914 (3) 0.38842 (15) 0.0508 (6)
H6A 0.2500 −0.3780 0.4517 0.061*
H6B 0.2448 −0.2593 0.3641 0.061*
C7 0.31449 (13) −0.5225 (3) 0.36732 (16) 0.0511 (6)
H7A 0.3226 −0.6393 0.4051 0.061*
H7B 0.2961 −0.5678 0.3069 0.061*
C8 0.48147 (13) −0.5074 (3) 0.38619 (13) 0.0411 (5)
C9 0.56372 (13) −0.3766 (3) 0.39205 (13) 0.0405 (5)
C10 0.63653 (15) −0.4479 (4) 0.35953 (15) 0.0530 (6)
H10 0.6343 −0.5769 0.3370 0.064*
C11 0.71251 (15) −0.3293 (4) 0.36017 (16) 0.0633 (7)
H11 0.7610 −0.3773 0.3377 0.076*
C12 0.71562 (14) −0.1406 (4) 0.39423 (16) 0.0552 (6)
C13 0.64543 (15) −0.0669 (4) 0.42879 (15) 0.0541 (6)
H13 0.6491 0.0607 0.4529 0.065*
C14 0.56919 (14) −0.1860 (3) 0.42700 (14) 0.0479 (5)
H14 0.5209 −0.1371 0.4497 0.058*
N1 0.14836 (11) −0.4716 (2) 0.35340 (11) 0.0435 (4)
N2 0.40087 (11) −0.4147 (3) 0.37969 (11) 0.0480 (5)
H2 0.4002 −0.2864 0.3830 0.058*
O1 0.48880 (10) −0.6908 (2) 0.38625 (10) 0.0573 (4)
Cl1 0.81091 (5) 0.01012 (12) 0.39483 (6) 0.0952 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1W 0.0567 (10) 0.0380 (10) 0.0677 (12) −0.0102 (8) 0.0123 (9) 0.0000 (9)
C1 0.0484 (13) 0.0450 (14) 0.0746 (15) −0.0061 (11) 0.0129 (11) 0.0122 (12)
C2 0.0503 (14) 0.0549 (16) 0.0971 (19) −0.0147 (12) 0.0184 (13) 0.0019 (14)
C3 0.0445 (13) 0.0754 (19) 0.0887 (18) −0.0116 (13) 0.0234 (12) −0.0014 (15)
C4 0.0427 (13) 0.0672 (18) 0.0939 (18) 0.0093 (12) 0.0244 (12) 0.0050 (15)
C5 0.0478 (13) 0.0479 (15) 0.0937 (18) 0.0037 (11) 0.0297 (12) −0.0020 (13)
C6 0.0437 (12) 0.0424 (13) 0.0682 (14) −0.0064 (10) 0.0164 (10) −0.0050 (11)
C7 0.0364 (11) 0.0373 (13) 0.0779 (15) −0.0021 (9) 0.0091 (10) −0.0042 (11)
C8 0.0383 (11) 0.0353 (12) 0.0482 (12) −0.0031 (9) 0.0067 (8) −0.0020 (9)
C9 0.0365 (10) 0.0375 (12) 0.0456 (11) −0.0029 (9) 0.0049 (8) 0.0003 (9)
C10 0.0440 (12) 0.0439 (13) 0.0720 (15) −0.0020 (10) 0.0150 (11) −0.0097 (11)
C11 0.0442 (13) 0.0648 (18) 0.0857 (18) −0.0042 (12) 0.0247 (12) −0.0076 (14)
C12 0.0413 (12) 0.0530 (16) 0.0710 (15) −0.0140 (10) 0.0121 (11) 0.0048 (12)
C13 0.0495 (13) 0.0394 (13) 0.0718 (15) −0.0083 (10) 0.0102 (11) −0.0057 (11)
C14 0.0397 (11) 0.0420 (13) 0.0628 (14) −0.0029 (9) 0.0129 (10) −0.0057 (11)
N1 0.0361 (9) 0.0344 (10) 0.0610 (11) −0.0010 (7) 0.0132 (8) 0.0014 (8)
N2 0.0360 (9) 0.0314 (10) 0.0751 (12) −0.0035 (7) 0.0094 (8) −0.0013 (9)
O1 0.0493 (9) 0.0342 (10) 0.0869 (11) −0.0040 (7) 0.0124 (8) −0.0050 (8)
Cl1 0.0650 (5) 0.0851 (6) 0.1438 (8) −0.0346 (4) 0.0410 (5) −0.0043 (5)

Geometric parameters (Å, º)

O1W—H1WA 0.826 (16) C6—H6A 0.9700
O1W—H1WB 0.808 (16) C6—H6B 0.9700
C1—N1 1.466 (3) C7—N2 1.451 (2)
C1—C2 1.516 (3) C7—H7A 0.9700
C1—H1A 0.9700 C7—H7B 0.9700
C1—H1B 0.9700 C8—O1 1.231 (2)
C2—C3 1.514 (3) C8—N2 1.336 (2)
C2—H2A 0.9700 C8—C9 1.493 (3)
C2—H2B 0.9700 C9—C10 1.383 (3)
C3—C4 1.515 (4) C9—C14 1.382 (3)
C3—H3A 0.9700 C10—C11 1.381 (3)
C3—H3B 0.9700 C10—H10 0.9300
C4—C5 1.514 (3) C11—C12 1.366 (3)
C4—H4A 0.9700 C11—H11 0.9300
C4—H4B 0.9700 C12—C13 1.372 (3)
C5—N1 1.469 (3) C12—Cl1 1.741 (2)
C5—H5A 0.9700 C13—C14 1.383 (3)
C5—H5B 0.9700 C13—H13 0.9300
C6—N1 1.460 (3) C14—H14 0.9300
C6—C7 1.504 (3) N2—H2 0.8600
H1WA—O1W—H1WB 109 (2) C7—C6—H6B 109.2
N1—C1—C2 111.19 (19) H6A—C6—H6B 107.9
N1—C1—H1A 109.4 N2—C7—C6 110.77 (17)
C2—C1—H1A 109.4 N2—C7—H7A 109.5
N1—C1—H1B 109.4 C6—C7—H7A 109.5
C2—C1—H1B 109.4 N2—C7—H7B 109.5
H1A—C1—H1B 108.0 C6—C7—H7B 109.5
C3—C2—C1 111.3 (2) H7A—C7—H7B 108.1
C3—C2—H2A 109.4 O1—C8—N2 122.74 (18)
C1—C2—H2A 109.4 O1—C8—C9 120.83 (18)
C3—C2—H2B 109.4 N2—C8—C9 116.42 (18)
C1—C2—H2B 109.4 C10—C9—C14 118.80 (18)
H2A—C2—H2B 108.0 C10—C9—C8 118.50 (18)
C2—C3—C4 109.98 (18) C14—C9—C8 122.69 (18)
C2—C3—H3A 109.7 C11—C10—C9 120.6 (2)
C4—C3—H3A 109.7 C11—C10—H10 119.7
C2—C3—H3B 109.7 C9—C10—H10 119.7
C4—C3—H3B 109.7 C12—C11—C10 119.3 (2)
H3A—C3—H3B 108.2 C12—C11—H11 120.3
C5—C4—C3 110.9 (2) C10—C11—H11 120.3
C5—C4—H4A 109.4 C11—C12—C13 121.5 (2)
C3—C4—H4A 109.4 C11—C12—Cl1 119.58 (18)
C5—C4—H4B 109.4 C13—C12—Cl1 118.89 (19)
C3—C4—H4B 109.4 C12—C13—C14 118.7 (2)
H4A—C4—H4B 108.0 C12—C13—H13 120.6
N1—C5—C4 111.4 (2) C14—C13—H13 120.6
N1—C5—H5A 109.4 C9—C14—C13 120.98 (19)
C4—C5—H5A 109.4 C9—C14—H14 119.5
N1—C5—H5B 109.4 C13—C14—H14 119.5
C4—C5—H5B 109.4 C6—N1—C1 112.30 (17)
H5A—C5—H5B 108.0 C6—N1—C5 110.17 (17)
N1—C6—C7 112.24 (17) C1—N1—C5 109.74 (16)
N1—C6—H6A 109.2 C8—N2—C7 122.38 (17)
C7—C6—H6A 109.2 C8—N2—H2 118.8
N1—C6—H6B 109.2 C7—N2—H2 118.8
N1—C1—C2—C3 −57.0 (3) C11—C12—C13—C14 −1.4 (4)
C1—C2—C3—C4 53.1 (3) Cl1—C12—C13—C14 179.04 (17)
C2—C3—C4—C5 −53.1 (3) C10—C9—C14—C13 0.7 (3)
C3—C4—C5—N1 57.3 (3) C8—C9—C14—C13 −178.0 (2)
N1—C6—C7—N2 163.46 (18) C12—C13—C14—C9 0.7 (3)
O1—C8—C9—C10 28.2 (3) C7—C6—N1—C1 69.4 (2)
N2—C8—C9—C10 −150.8 (2) C7—C6—N1—C5 −167.94 (19)
O1—C8—C9—C14 −153.1 (2) C2—C1—N1—C6 −177.55 (19)
N2—C8—C9—C14 27.9 (3) C2—C1—N1—C5 59.6 (2)
C14—C9—C10—C11 −1.4 (3) C4—C5—N1—C6 175.98 (19)
C8—C9—C10—C11 177.3 (2) C4—C5—N1—C1 −59.9 (2)
C9—C10—C11—C12 0.7 (4) O1—C8—N2—C7 −3.5 (3)
C10—C11—C12—C13 0.8 (4) C9—C8—N2—C7 175.58 (18)
C10—C11—C12—Cl1 −179.72 (18) C6—C7—N2—C8 163.4 (2)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1W—H1WA···N1i 0.83 (2) 2.03 (2) 2.851 (3) 174 (2)
N2—H2···O1W 0.86 2.06 2.855 (2) 153
C6—H6B···O1W 0.97 2.59 3.406 (3) 142

Symmetry code: (i) −x+1/2, y+1/2, −z+1/2.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: SU5034).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989014026851/su5034sup1.cif

e-71-00o39-sup1.cif (23.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014026851/su5034Isup2.hkl

e-71-00o39-Isup2.hkl (179.5KB, hkl)

Supporting information file. DOI: 10.1107/S2056989014026851/su5034Isup3.cml

. DOI: 10.1107/S2056989014026851/su5034fig1.tif

The mol­ecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.

b . DOI: 10.1107/S2056989014026851/su5034fig2.tif

A view along the b axis of the crystal packing of the title compound. The dashed lines indicate the hydrogen bonds (see Table 1 for details; C-bound H atoms have been omitted for clarity).

CCDC reference: 1038084

Additional supporting information: crystallographic information; 3D view; checkCIF report


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