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The American Journal of Tropical Medicine and Hygiene logoLink to The American Journal of Tropical Medicine and Hygiene
. 2015 Oct 7;93(4):678–683. doi: 10.4269/ajtmh.15-0316

Macrolide Resistance in the Syphilis Spirochete, Treponema pallidum ssp. pallidum: Can We Also Expect Macrolide-Resistant Yaws Strains?

David Šmajs 1,*, Lenka Paštěková 1, Linda Grillová 1
PMCID: PMC4596581  PMID: 26217043

Abstract

Treponema pallidum ssp. pallidum (TPA) causes over 10 million new cases of syphilis worldwide whereas T. pallidum ssp. pertenue (TPE), the causative agent of yaws, affects about 2.5 million people. Although penicillin remains the drug of choice in the treatment of syphilis, in penicillin-allergic patients, macrolides have been used in this indication since the 1950s. Failures of macrolides in syphilis treatment have been well documented in the literature and since 2000, there has been a dramatic increase in a number of clinical samples with macrolide-resistant TPA. Scarce data regarding the genetics of macrolide-resistant mutations in TPA suggest that although macrolide-resistance mutations have emerged independently several times, the increase in the proportion of TPA strains resistant to macrolides is mainly due to the spread of resistant strains, especially in developed countries. The emergence of macrolide resistance in TPA appears to require a two-step process including either A2058G or A2059G mutation in one copy of the 23S rRNA gene and a subsequent gene conversion unification of both rRNA genes. Given the enormous genetic similarity that was recently revealed between TPA and TPE strains, there is a low but reasonable risk of emergence and spread of macrolide-resistant yaws strains following azithromycin treatment.

Introduction

Syphilis is a sexually transmitted disease caused by Treponema pallidum ssp. pallidum (TPA), a spirochete that is genetically closely related to the causative agent of yaws, T. pallidum ssp. pertenue (TPE). Both TPA and TPE strains are highly related, whole genome analyses of TPA and TPE treponemes revealed a sequence identity of 99.8%.1

Although penicillin remains the drug of choice in the treatment of syphilis, macrolide antibiotics were historically recommended in penicillin-allergic patients for the treatment of primary, secondary, and latent syphilis.2

In 2007, World Health Organization (WHO) launched a program to eradicate yaws by the year 2020. The considered treatment regimens include a single dose of azithromycin or a single dose of benzathine penicillin G.3,4

The antibiotic resistance of TPA was comprehensively reviewed by L. Stamm.5,6 This article focuses on the occurrence of macrolide resistance in TPA strains with respect to the de novo emergence of macrolide resistance and spread of existing macrolide-resistant TPA strains.

Macrolide Failures in Syphilis Treatment and Frequency of Mutations in the 23S rRNA Gene

The commonly used macrolide antibiotics include erythromycin, clarithromycin, roxithromycin, azithromycin, and spiramycin. Different macrolide antibiotics interact with different regions of the 23S rRNA gene.7

Failures of macrolide treatment of syphilis have been well documented in the literature818 and included cases of erythromycin–clarithromycin–azithromycin–spiramycin treatment failures. Until now, no macrolide treatment failures in the treatment of yaws have been reported.1921

A wide spectrum of macrolide-resistance mutations in 23S rRNA gene have been reported in other bacteria. However, only the A2058G and A2059G mutations (the position numbers correspond to positions on the Escherichia coli 23S rRNA gene) have been identified in TPA from clinical samples.16,22

In several bacteria including Mycoplasma smegmatis, Mycobacterium avium, and Treponema denticola, the frequency of macrolide-resistant mutants was 0.7 × 10−8,23 10−8 to 10−9,24 and 5 × 10−9,25 respectively. For T. pallidum, no data on mutation rates leading to macrolide-resistant mutations are available.

In general, the predicted mutation rate per genome varies around 3.3 × 10−3 per genome and replication for a variety of organisms including phages, bacteria, and yeasts.26 For E. coli it is estimated to be 5.4 × 10−10 mutations per base, per DNA replication.27 Assuming that the nucleotide TPA mutation rate is similar to that frequently observed in other bacteria, the TPA mutation rate can be estimated to be 0.22 − 0.38 × 10−8 per base and DNA replication.

In other spirochetes, the number of infecting bacteria in whole blood samples were found within the range of 104 to 105 bacteria/mL.28,29 In human TPA infections, a reported number of bacteria/mL of whole blood reached 1 × 103 and 3 × 104.30,31 The total blood volume (~5 L) therefore likely contains in one point of TPA infection at least 108 treponemes. Assuming a relatively low number of infecting spirochetes, the number of DNA replications approaches a number of microorganisms in human body. The number of DNA replications (getting closer to at least 108) in the course of human infection is within the same range of estimated reciprocal number of mutation rate (0.22 − 0.38 × 10−8 per base and DNA replication).

Presence of A2058G or A2059G Mutation in both TPA rRNA Operons

In all completely sequenced treponemal strains and in several additionally analyzed strains,1,3242 comprising altogether 21 strains, sequences of 5S, 16S, and 23S rRNA genes in both rrn operons were identical in particular strains including syphilis-, yaws- and endemic syphilis-causing strains. The sequences of 5S, 16S, and 23S rRNA genes of the two rrn operons appear to undergo gene conversion unification leading to sequence identity of rRNA paralogs.43 Sequence analysis of amplified 23S rDNA from 144 patients revealed no sequence differences between both loci in the individual samples, although only a regions spanning several hundred base pairs were evaluated.44,45 Moreover, both copies of the 23S rDNA were amplified during the detection of macrolide resistance in many studies (listed in Table 1), and in all analyzed TPA DNA samples (N = 396) from these studies, the same macrolide resistance mutations (A2058G or A2059G) were found in both copies of the 23S rRNA gene. In addition, both mutations were never found combined.4447 Altogether, no evidence of sequence heterogeneity of 23S rRNA gene copies exists in TPA to date. However, in T. denticola, the presence of an A2058G mutation in one 23S rRNA gene has been reported.25 Recent analysis of 23S rRNA genes in 184 prokaryotic species with multiple rrn operons revealed that 38.6% of the analyzed genomes contained identical 23S rRNA sequences within the individual genome.66 Although the reasons for identical 23S rDNA loci are unknown, the presence of either A2058G or A2059G mutation in TPA in both copies of the 23S rRNA gene suggests not only an efficient mechanism for copying between the two operons but also a general need for this genomic constitution. At the same time, the probability of emergence of macrolide-resistant mutation in TPA is lowered by several orders of magnitude. In Escherichia coli, recombination between rrn operons occurs at frequencies of 10−4 − 10−5.67

Table 1.

An overview of studies mapping the prevalence of A2058G and A2059G mutations in clinical samples containing TPA

Country Year City, geographic area No. of analyzed samples No. of samples containing macrolide-resistant TPA (%) No. of samples containing TPA with A2058G (%) No. of samples containing TPA with A2059G (%) References
Australia 2004–2011 Sydney 409 345 (84.4) 345 (84.4) * 46
Canada 2000–2003 British Columbia 56 5 (8.9) 5 (8.9) 47
2007–2008 Alberta 14 4 (28.6) 4 (28.6) 48
2007–2009 Alberta and Northwest Territories 43 7 (16.3) 7 (16.3) 49
China 2007–2008 Shanghai 38 38 (100) 38 (100) 50
2008–2011 211 194 (91.9) 194 (91.9) 51
2010–2012 Shandong 66 66 (100) 61 (92.4) 5 (7.6) 52
Czech Republic 2004–2010 75 28 (37.3) 17 (22.7) 11 (14.7) 44
2011–2013 69 46 (66.7) 39 (56.5) 7 (10.1) 45
Great Britain 2006–2008 London 18 12 (66.7) 11 (61.1) 1 (5.6) 53
Ireland 2002 Dublin 17 15 (88.2) 15 (88.2) 54
2009–2010 Dublin 29 27 (93.1) 27 (93.1) 5
Madagascar 2000–2007 141 1 (0.7) 0 (0.0) 1 (0.7) 56, 57, 58
South Africa 2005–2010 100 1 (1.0) 1 (1.0) 0 (0.0) 59
Taiwan 2009–2011 102 0 (0.0) 0 (0.0) 0 (0.0) 60
2009–2013 268 2 (0.7) 2 (0.7) 0 (0.0) 61§
United States 1999–2003 San Francisco 55 12 (21.8) 12 (21.8) 54
2000–2004 San Francisco 124 46 (37.1) 46 (37.1) 15
2004–2007 San Francisco 62 42 (67.7) 42 (67.7) 62
2001–2003 Seattle 23 3 (13.0) 3 (13.0) 54
2001–2010 Seattle 128 92 (71.9) 79 (61.7) 13 (10.2) 56
1998–2000 Baltimore 19 2 (10.5) 2 (10.5) 54
2001–2005 58 20 (34.5) 20 (34.5) 63
2007–2009 141 75 (53.2) 75 (53.2) 64
2007–2009 129 83 (64.3) 66 (51.2) 17 (13.2) 65#

TPA = Treponema pallidum ssp. pallidum.

*

Mutation A2059G was not tested in this study. The occurrence of A2059G mutation16 was published 9 years after publication of the A2058G mutation.22

This study also analyses samples investigated in a previous study by Martin and others.48

These studies clearly stated that both copies of 23S rRNA genes were amplified. In all cases, macrolide resistance was found in both copies of 23S rDNA.

§

This study also analyses samples investigated in a previous study by Wu and others.60

This study also analyses samples investigated in a previous study by Lukehart and others54 and Marra and others.63

#

This study analyses portion of samples investigated in a previous study by Su and others.64

Prevalence of Macrolide-Resistant Samples of TPA, Patient*s Characteristics, and TPA Genotypes

The presence of A2058G and A2059G mutations causing macrolide resistance was screened in TPA clinical samples in a number of studies from different countries including Australia,46 Canada,4749 China,5052 Czech Republic,44,45 United Kingdom,53 Ireland,54,55 Madagascar,56,57 South Africa,59 Taiwan,60,61 and United States15,54,56,6265 (Table 1). A geographical distribution of clinical samples containing macrolide-resistant TPA in studies with samples isolated after 2004 is shown in Figure 1 . In all published studies from the same area, it was clear that the number of macrolide-resistant TPA in clinical samples increased over time (Figure 2 ). The prevalence of macrolide-resistant TPA samples appears to show geographical differences with lower prevalence on islands (Madagascar, Taiwan) and relatively remote areas (Northwest Territories, Canada; Lesotho, South Africa), whereas the highest prevalence was in large cities with a high level of tourism and business travel (Sydney, Shanghai, London, Dublin, San Francisco, Seattle; Table 1).

Figure 1.

Figure 1.

A geographical distribution of clinical samples containing macrolide-resistant TPA in different countries. Only studies with samples collected after 2004 are shown (other studies are shown in Table 1) and only most recent study from a particular area is shown. The exception is the study by Grimes and others56 where analyzed samples were collected between 2001 and 2010 and the study of Van Damme and others57 where the time of sample collection was not indicated. However, according to the work of Tipple and Taylor,58 these samples were taken between 2000 and 2007. The frequencies of macrolide resistant strains are shown based on a color code (lower left). The size of circle indicates the number of tested samples. The circle position indicates prevalent origin of samples within the country. Note that Treponema pallidum ssp. pallidum (TPA) has been analyzed from only a limited number of countries. The map template was downloaded from the web (http://imgkid.com/world-map-blank-color.shtml).

Figure 2.

Figure 2.

The relative prevalence of A2058G and A2059G mutations in clinical samples containing Treponema pallidum ssp. pallidum (TPA) in different countries. The number of strains harboring macrolide-resistance causing mutations has increased over time in all countries with available results from multiple studies/years.

Several studies have shown that treponemes harboring the A2058G mutation or one of the two A2058G or A2059G mutation are statistically more often found among men who have sex with men (MSM) patients compared with non-MSM patients.45,49,64 Moreover, Su and others64 found that treponemes harboring the A2058G mutation were more often associated with HIV-positive patients. These associations could reflect differences in the sexual networks and/or the differences in the use of macrolide antibiotics between different groups of patients.

Some studies44,45,53,56analyzed resistance genotypes together with sequence data from TP0548 gene locus that is used as a chromosomal target in sequencing-based typing44,45 and enhanced Centers for Disease Control and Prevention typing schemes.68,69 Some of them described predominance56 or an association between individual TPA genotypes and the A2058G mutation.53 In addition, several unique alleles (U2, U5, and U6) of TP0548 identified by sequencing-based typing were found to be associated with macrolide resistance mutations while the S allele from TP0548 was associated with macrolide susceptibility.44,45

On the other hand, TPA samples with identical genotypes based on the typing of at least two independent genomic loci but with different mutations within the 23S rRNA genes have been reported44,45,53,57 (Table 2) indicating that macrolide resistance emerged several times, independently of strain background.

Table 2.

Clinical samples containing TPA with identical genotypes based on the typing of at least two independent chromosomal loci but with different versions of the 23S rRNA gene

23S rRNA gene
Genotype* Wildtype A2058G A2059G References
SS + + + 44, 45
SU2 + + § 44
14d/f + + § 46, 53
14d/i + + § 56

TPA = Treponema pallidum ssp. pallidum.

*

Genotype was determined using sequencing-based typing or enhanced Centers for Disease Control and Prevention typing.44,68,69

Besides wild-type 23S rDNA, the SS genotype can have either the A2058G mutation or the A2059G mutation.

In all tested loci, the TPA in this sample is sequentially identical to the laboratory reference strain TPA SS14.

§

Not found yet.

Efficacy of Azithromycin in the Treatment of Syphilis caused by Macrolide-Susceptible TPA

The work of Riedner and others70 revealed that treatment of 155 persons with syphilis in Tanzania with 2 g of single oral dose of azithromycin was as successful as treatment with penicillin G. Kiddugavu and others71 showed that 1 g of oral azithromycin achieved higher cure rates compared with penicillin in 165 patients from Uganda. As shown by Hook and others,72 none of the 40 participants after 1 g of oral azithromycin, who in the preceding 30 days had been exposed to partners with infectious syphilis, developed signs of syphilis. Moreover, patients from Louisiana with early syphilis treated with azithromycin (N = 46) had similar cumulative response rates as patients treated with penicillin (N = 14).73 Similarly to TPA, treatment of 110 TPE-infected children with single oral dose of azithromycin in Papua New Guinea revealed slightly better results than treatment with benzathine benzylpenicillin.74 In Ghana, the analysis of 90 children with ulcers after azithromycin mass treatment to control trachoma revealed no evidence of yaws based on serology and polymerase chain reaction (PCR).75 In addition, no evidence of azithromycin treatment failure due to macrolide resistance has been detected during mass treatment of yaws patients.20 The above presented data indicate that de novo emergence of macrolide-resistance per treated patient is very rare, in order of 10−2 or lower.

Risk of Macrolide Treatment Failure in Yaws

The first effort to eradicate yaws by the WHO and the United Nations Children*s Fund (UNICEF) during 1952–1964, using injectable penicillin, led to a decrease in the global yaws prevalence from 50 to 2.5 million cases. Although the number of cases was reduced by 95%, the disease was not eradicated mainly due to the failure to identify and treat contacts and because of the existence of latent cases.4 In 2007, WHO launched a new program to eradicate yaws by the year 2020. The preferred treatment includes a single, peroral dose of azithromycin (30 mg/kg). Benzathine penicillin G (1.2 million units for adults and 0.6 million units for children) serves as a back-up treatment scheme since its administration is more complicated (involving painful intramuscular injections, requiring trained medical staff, etc.).4,74 Although the development of penicillin resistance appears to be extremely unlikely,76,77 azithromycin use could be complicated by treatment failures linked to the emergence of macrolide resistance mutations in the 23S rRNA genes.

Genotype analyses of macrolide-resistant TPA from clinical samples and estimates of TPA mutation rate and bacterial load during infection suggest that macrolide-resistance mutations emerged, independently, several times, during syphilis treatment, or during macrolide use for other indications of TPA infected people. The presence of mutations in both 23S rRNA genes suggests that emergence of macrolide resistance in TPA appears to require a two-step process including either A2058G or A2059G mutation in one copy of the 23S rRNA gene and a subsequent gene conversion unification of rRNA gene copies. The accelerated increase in the proportion of TPA strains resistant to macrolides since 2000 is likely due to the spread of already-existing resistant strains. Although this increase coincides with the introduction and the increased use of azithromycin in the United States78 and other countries, the exact role of azithromycin relative to the increase is not known. The spread of preexisting macrolide-resistant TPA strains is supported by 1) efficacy of azithromycin treatment in several trials, 2) increased prevalence in large cities with a high level of travel, and 3) increased prevalence among several groups of patients. Given the fact that the whole genome nucleotide divergence between TPA and TPE subspecies is only few times higher than the divergence within TPA and TPE subspecies,1 respectively, the WHO campaign to eradicate yaws with a perorally administered single dose of azithromycin possesses a low but reasonable risk of emergence and spread of macrolide-resistant TPE strains.

ACKNOWLEDGMENTS

We thank M. Strouhal for his careful reading of the manuscript and suggestions. This work was supported by the Grant Agency of the Czech Republic (P302/12/0574) to DS.

Footnotes

Authors* addresses: David Šmajs, Lenka Paštěková, and Linda Grillová, Masaryk University, Department of Biology, Faculty of Medicine, Masaryk University, Brno, Czech Republic, E-mails: dsmajs@med.muni.cz, lmikal@med.muni.cz, and lindagrillova@gmail.com.

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