Abstract
During meiotic prophase, telomeres cluster, forming the bouquet chromosome arrangement, and facilitate homologous chromosome pairing. In fission yeast, bouquet formation requires switching of telomere and centromere positions. Centromeres are located at the spindle pole body (SPB) during mitotic interphase, and upon entering meiosis, telomeres cluster at the SPB, followed by centromere detachment from the SPB. Telomere clustering depends on the formation of the microtubule-organizing center at telomeres by the linker of nucleoskeleton and cytoskeleton complex (LINC), while centromere detachment depends on disassembly of kinetochores, which induces meiotic centromere formation. However, how the switching of telomere and centromere positions occurs during bouquet formation is not fully understood. Here, we show that, when impaired telomere interaction with the LINC or microtubule disruption inhibited telomere clustering, kinetochore disassembly-dependent centromere detachment and accompanying meiotic centromere formation were also inhibited. Efficient centromere detachment required telomere clustering-dependent SPB recruitment of a conserved telomere component, Taz1, and microtubules. Furthermore, when artificial SPB recruitment of Taz1 induced centromere detachment in telomere clustering-defective cells, spindle formation was impaired. Thus, detachment of centromeres from the SPB without telomere clustering causes spindle impairment. These findings establish novel regulatory mechanisms, which prevent concurrent detachment of telomeres and centromeres from the SPB during bouquet formation and secure proper meiotic divisions.
Author Summary
Meiosis is a type of cell division, that generates haploid gametes and is essential for sexual reproduction. During meiosis, telomeres cluster on a small region of the nuclear periphery, forming a conserved chromosome arrangement referred to as the “bouquet”. Because the bouquet arrangement facilitates homologous chromosome pairing, which is essential for proper meiotic chromosome segregation, it is of great importance to understand how the bouquet arrangement is formed. In fission yeast, the bouquet arrangement requires switching of telomere and centromere positions. During mitosis, centromeres are located at the fungal centrosome called the spindle pole body (SPB). Upon entering meiosis, telomeres cluster at the SPB, and centromeres become detached from the SPB, forming the bouquet arrangement. In this study, we show that centromere detachment is linked with telomere clustering. When telomere clustering was inhibited, centromere detachment was also inhibited. This regulatory relationship depended on a conserved telomere component, Taz1, and microtubules. Furthermore, we show that the regulatory relationship is crucial for proper meiotic divisions when telomere clustering is defective. Our findings reveal a hitherto unknown regulatory relationship between meiotic telomere and centromere positions in bouquet formation, which secures proper meiotic divisions.
Introduction
Chromosome positioning changes dynamically during development and differentiation, and contributes to various chromosomal events including gene expression and DNA metabolism [1–5]. Especially during meiosis, chromosomes adopt a characteristic position called the “bouquet” arrangement, in which telomeres cluster at the nuclear periphery. The bouquet arrangement is highly conserved among eukaryotes [6, 7], and how it is formed and what functions it has are important questions in the field of meiosis.
Studies of various organisms show that the bouquet arrangement facilitates homologous chromosome pairing [7–9]. Bouquet-defective mutants of yeasts and mammals exhibit impaired homologous chromosome pairing and phenotypes associated with the impaired pairing, such as increased non-homologous association, decreased recombination, and defective formation of the synaptonemal complex, a structure that bridges the paired homologous chromosomes [10–23]. In Caenorhabditis elegans, special chromosome regions called “pairing centers” cluster instead of telomeres, and impaired clustering of pairing centers causes similar defects [24–29]. Homologous chromosome pairing is essential for formation of chiasmata, which physically link homologous chromosomes and enable their segregation at meiosis I (reductional segregation). Consistently, bouquet-defective organisms also exhibit impaired chromosome segregation [10, 14, 30].
Among different organisms, the fission yeast Schizosaccharomyces pombe shows the most prominent example of the bouquet arrangement. S. pombe mitotic chromosomes are positioned with their centromeres clustered at the spindle pole body (SPB; a centrosome equivalent in fungi) and their telomeres located away from it (this corresponds to the “Rabl” configuration seen in other organisms) [31]. Under nitrogen-starved conditions, S. pombe cells enter meiosis through cell conjugation. Around this period, telomeres cluster at the SPB and centromeres become detached from it, forming the bouquet arrangement (Fig 1A) [32]. When the bouquet arrangement is formed, the SPB oscillates between the cell ends with the clustered telomeres, generating so-called “horsetail” nuclear movements (Fig 1A, Horsetail stage). The SPB-led telomere movements promote pairing of homologous chromosomes by inducing their alignment and contact; impairment of either telomere clustering or horsetail movements compromises homologous chromosome pairing [8, 33].
Studies of S. pombe have unveiled additional functions of the bouquet arrangement. Telomere clustering additionally contributes to spindle formation, and defective telomere clustering causes impairment of spindle formation [34, 35]. Furthermore, centromere detachment from the SPB induces the formation of meiosis-specific centromeres. During homologous chromosome segregation, homologous chromosomes attach to opposite SPBs (bipolar attachment) with sister chromatids attaching to the same SPB (monopolar attachment) (S1A Fig) [36, 37]. At this period, the kinetochores on the sister centromeres face the same side (kinetochore mono-orientation), facilitating monopolar attachment of sister chromatids, while centromere cohesion persists, preventing sister chromatid separation upon their bipolar attachment (S1B Fig) [38]. Persistent centromere cohesion also enables sister chromatid segregation (equational segregation) at meiosis II. Without centromere detachment from the SPB, meiotic centromere properties are not properly established and sister chromatids frequently undergo equational segregation at meiosis I [39, 40]. Centromere detachment also induces meiotic centromere formation in the budding yeast Saccharomyces cerevisiae [41].
The linker of nucleoskeleton and cytoskeleton (LINC) complex formed by the conserved SUN (Sad1/Unc-84) and KASH (Klarsicht/ANC-1/Syne homology) domain nuclear membrane proteins recently emerged as a key player in SPB association of telomeres and centromeres [8, 33, 42–44]. In S. pombe, the LINC complex consisting of Sad1 (SUN) and Kms1/Kms2 (KASH) is localized at the SPB. Upon entering meiosis, meiosis-specific Bqt1 and Bqt2 recruit the LINC complex to telomeres, resulting in localization of Sad1 and Kms1/Kms2 at telomeres in addition to the SPB [10, 45]. The telomere-recruited LINC complexes form the microtubule-organizing center termed the “telocentrosome” (Fig 1B). Subsequently, microtubule motors gather telomeres at the SPB by moving on SPB- and telocentrosome-nucleated microtubules (S1C Fig) [33, 45]. SPB localization of centromeres also depends on the LINC complex; the Csi1-dependent interaction of the outer kinetochore components with Sad1 causes tethering of mitotic centromeres to the SPB [44]. When the bouquet is formed, the outer kinetochore components delocalize from the centromere, and this kinetochore disassembly causes centromere detachment from the SPB [39, 46].
In S. pombe, centromere detachment immediately follows telomere clustering [47, 48], and both events require mating pheromone-dependent activation of MAP kinase [39, 49]. Together with the fact that SPB localization of telomeres and centromeres depends on the LINC complex, these facts suggest that regulation of centromere detachment and telomere clustering is related. However, their regulatory relationship remains unclear.
Here, we show that, when telomere clustering is inhibited, centromere detachment is also inhibited. Efficient centromere detachment requires SPB recruitment of the telomere component Taz1 by telomere clustering and microtubules that drive telomere clustering. We provide evidence indicating that this regulation secures proper spindle formation when telomere clustering is defective. To our knowledge, this is the first example of a regulatory relationship between telomere and centromere positions, which is critical for proper execution of meiotic divisions.
Results
Centromere detachment from the SPB is inhibited in telomere clustering-defective mutants
S. pombe cells normally enter meiosis through conjugation of two haploid cells. The bouquet arrangement is formed around the period of cell conjugation [45, 47], and persists until meiotic divisions start (Fig 1A) [32]. To explore the relationship between telomere clustering and centromere detachment in bouquet formation, we examined telomere and centromere positioning during karyogamy and the horsetail stage in telomere clustering-defective cells.
We first examined telomere positioning by visualizing the telomere-proximal sod2 locus on chromosome I using the lacI/lacO recognition system [50] (Fig 2A, Mitotic interphase). In wild-type cells, during mitotic interphase, sod2 signals were located away from the SPB, which was visualized by an mCherry-tagged, conserved SPB component, Sfi1 [51]. By contrast, they were mostly juxtaposed with the SPB during karyogamy and the meiotic mononuclear stage (including the horsetail and post-horsetail stages; see Fig 1A), confirming the occurrence of telomere clustering (Fig 2A and 2B, WT). Telomere clustering depends on telomere-LINC interaction, and a Sad1 interactor, Bqt1, and a telomere-Bqt1 connector, Rap1, are essential for this interaction (Fig 1B) [10, 11, 52]. Consistently, loss of either Bqt1 (bqt1Δ) or Rap1 (rap1Δ) caused almost complete elimination of sod2-SPB juxtaposition (Fig 2A and 2B). Furthermore, Rap1 interacts with telomeres via two different telomere-binding proteins, Taz1 and Pot1 (Fig 1B) [11, 52–54]. Loss of either Taz1 (taz1Δ) or a Rap1-Pot1 connector, Poz1 (poz1Δ), probably partially compromises telomere-LINC interaction, and loss of both eliminates the interaction completely. Accordingly, introduction of taz1Δ or poz1Δ mutation only reduced or rarely affected sod2-SPB juxtaposition, whereas introduction of both mutations almost completely eliminated their juxtaposition (Fig 2B, Karyogamy). Thus, telomere-clustering defects are correlated with telomere-LINC interaction defects. Telomere clustering also depends on telocentrosome formation, which requires a γ-tubulin complex(γ-TuC)-recruiting factor, Mto1 (Fig 1B) [45], and sod2-SPB juxtaposition was reduced in mto1Δ cells (Fig 2A and 2B).
We next examined centromere positioning by visualizing the centromere-specific histone H3 variant Cnp1 [55]. In wild-type cells, all centromeres were co-localized with the SPB during mitosis (Fig 2C, Mitotic interphase), but they were mostly located away from it during karyogamy and the horsetail stage (judged by a single nucleus with an astral microtubule array; see Fig 1A) (Fig 2C and 2D, WT). By striking contrast, in all telomere clustering-defective cells, centromeres were often co-localized with the SPB (Fig 2C and 2D; S2 Fig). Therefore, centromere detachment from the SPB is commonly inhibited in telomere clustering-defective cells. However, in taz1Δ and mto1Δ cells, although there was a considerable level of telomere-SPB association (Fig 2B), centromere detachment was inhibited at similar levels to those seen in bqt1Δ and rap1Δ cells during karyogamy (Fig 2D, Karyogamy; no statistically significant differences among the mutants), in which telomere-SPB association was almost completely lost (Fig 2B). This indicates that inhibition of centromere detachment is not correlated with loss of telomere-SPB association.
Kinetochore disassembly is inhibited in telomere clustering-defective mutants
Because centromere detachment is induced by outer kinetochore disassembly, we next examined the localization of Nuf2 and Mis12, which are components of the Ndc80 and Mis12 outer kinetochore complexes, respectively. The outer kinetochore components delocalize from the centromere at the time of centromere detachment, and remain delocalized until kinetochore reformation occurs around the end of the horsetail stage (Fig 3A) [46]. In wild-type cells, Nuf2 was observed at the centromere-localized SPB during mitotic interphase, and was mostly absent during karyogamy and the horsetail stage (Fig 3B and 3C, WT). Mis12 showed similar localization patterns, but with higher observation frequencies (S3A and S3B Fig, WT). The higher observation frequencies probably mean that Mis12 complexes delocalize from the centromere later and re-localize at the centromere earlier than Ndc80 complexes.
By contrast, in all telomere clustering-defective mutants, Nuf2 and Mis12 signals were frequently observed (Fig 3B–3D; S3 Fig). The higher observation frequencies in the horsetail stage were not due to enrichment of cells in the late, kinetochore-reformation stage (Fig 3A) because, when we specified early horsetail-stage cells by nuclear signals of RFP-tagged Mrc1, a DNA replication regulator that was observed only in the early meiotic stage (S4A Fig), Nuf2 was still observed at higher frequencies (Fig 3C, Horsetail with Mrc1). In addition, the higher observation frequencies were not caused by centromere clustering-dependent increases in signal intensities because the number of centromere signals significantly increased during the horsetail stage in the bqt1Δ mutant [average number of Cnp1 signals was 3.4 ± 1.1 (n = 162) for wild type and 3.9 ± 1.2 (n = 225) for the bqt1Δ mutant during the horsetail stage; p<0.001 by the Student’s t-test]. This indicates that delocalization of the outer kinetochore components is inhibited in the mutants. The retained signals were localized either at the SPB or at the SPB-detached centromeres (Fig 3B and 3D; S3A, S3C and S4B Figs) [centromere and/or SPB localization of Nuf2 signals was confirmed by co-localization of the Nuf2 signals with either SPB and/or centromere signals in cells in which both the SPB and centromeres were visualized (n = 73)]. Furthermore, the signals were sometimes co-localized with the centromere-free SPB (Fig 3E, arrowhead). This indicates that, in addition to the dissociation of kinetochore complexes from the centromere, that from the SPB is also inhibited. We also noticed that localization patterns of the retained signals in the mto1Δ mutant were somewhat different from those in other mutants; the signals tended to be localized at SPB-detached centromeres in mto1Δ cells, but at the SPB in other mutant cells (Fig 3D; S3C and S4B Figs).
Microtubule disruption inhibits centromere detachment from the SPB
Because telomere clustering depends on microtubules [45], we next examined if microtubule disruption inhibits centromere detachment using a microtubule-depolymerizing drug, methyl 2-benzimidazole carbamate (MBC). To disrupt microtubules before telomere clustering, we synchronously induced meiosis using haploid cells bearing both mating-type genes, as reported previously [40, 45]. These haploid cells underwent meiosis fairly synchronously after a single mitotic division (shown by a transient increase in binuclear cells) in nitrogen-depleted conditions, forming more than two nuclei (S5A–S5C Fig). We treated the cells with MBC or its solvent DMSO after mitotic division.
In the DMSO-treated control experiment, as the percentage of cells with SPB-associated telomeres increased (Fig 4A, WT+DMSO), the percentage of those with SPB-associated centromeres (Fig 4B and 4C, WT+DMSO) or Nuf2 signals (Fig 4D and 4E, WT+DMSO) conversely decreased. This confirms the occurrence of centromere detachment and kinetochore disassembly in addition to telomere clustering. It should also be noted that loss of Bqt1 or Mto1 caused inhibition of telomere clustering, centromere detachment, and kinetochore disassembly in haploid meiotic cells, as shown by the decrease in cells with SPB-associated telomeres (Fig 4A, bqt1Δ and mto1Δ) and the increase in those with SPB-associated centromeres (Fig 4B and 4C, bqt1Δ and mto1Δ) or Nuf2 signals (Fig 4D and 4E, bqt1Δ and mto1Δ). Thus, haploid meiotic cells mirror diploid meiotic zygotes.
MBC treatment inhibited telomere clustering without inhibiting meiosis progression (S5A–S5C Fig), as shown by a significant decrease in the percentage of cells with SPB-associated telomeres (Fig 4A, WT+MBC). Notably, MBC also inhibited centromere detachment and kinetochore disassembly, as shown by a significant increase in the percentage of cells with SPB-associated centromeres (Fig 4B and 4C, WT+MBC) or Nuf2 signals (Fig 4D and 4E, WT+MBC). The retained Nuf2 signals were often located away from the SPB (Fig 4D and 4E, WT+MBC). This localization pattern was similar to that seen in mto1Δ cells but different from that seen in bqt1Δ cells, where the signals were mainly at the SPB (Fig 4D and 4E). These observations suggest that the effects of MBC on kinetochore disassembly are similar to those of mto1Δ mutation but different from those of bqt1Δ mutation. Furthermore, although the effects are similar, those of MBC are perhaps stronger than the mto1Δ mutation because the percentage of Nuf2-retaining cells was larger in MBC-treated cells than in mto1Δ cells (Fig 4D, WT+MBC and mto1Δ).
Nuf2 delocalization is delayed and its re-localization is advanced in telomere clustering-defective cells
To understand the effects of impaired telomere clustering on kinetochore disassembly in greater detail, we next examined the localization dynamics of kinetochore components in haploid meiotic cells. In all wild-type cells, Nuf2 signals disappeared transiently (Fig 5A and 5B, WT; S1 and S2 Movies). By contrast, in bqt1Δ cells, Nuf2 signals sometimes did not disappear (Fig 5A, bqt1Δ), confirming inhibition of kinetochore disassembly. Furthermore, even when they disappeared, their disappearance was delayed, and their reappearance was conversely advanced (Fig 5A–5C; S3 and S4 Movies); as a result, the duration of Nuf2 disappearance was shorter (Fig 5D). These observations confirm the inhibition of kinetochore disassembly in telomere clustering-defective cells.
Defective telomere clustering causes equational segregation of sister chromatids at meiosis I
Kinetochore disassembly is thought to be required for establishment of sister kinetochore mono-orientation and protection of centromere cohesion; therefore, we next examined sister chromatid segregation in telomere clustering-defective cells. For this analysis, we used cells that do not form chiasmata because chiasmata promote monopolar attachment of sister chromatids and obscure centromere properties (S1B Fig) [38]. If the properties of meiosis-specific centromeres are impaired, sister chromatids should undergo equational segregation in chiasma-lacking cells.
GFP visualization of centromeres of one of the homologous chromosomes (Fig 6A) showed that sister chromatids rarely underwent equational segregation in rec12 recombination-deficient, chiasma-lacking zygotes (Fig 6B, +), as reported previously [38, 40]. By contrast, introduction of bqt1Δ or mto1Δ mutation significantly increased equational segregation in rec12 zygotes (Fig 6B). This indicates that the centromere properties are compromised. In chiasma-lacking cells, sister centromeres frequently attach to both SPBs despite mono-orientation of sister kinetochores, but protected centromere cohesion prevents sister chromatid separation. In these cells, sgo1Δ mutation, which eliminates cohesion protection, causes frequent equational segregation of sister chromatids (Fig 6C, +) [38]. Notably, bqt1Δ mutation further increased equational segregation in the rec12Δ sgo1Δ mutant (Fig 6C, bqt1Δ), similar to moa1Δ mutation (S6 Fig), which is thought to compromise kinetochore mono-orientation [56]. This strongly suggests that bqt1Δ mutation compromises kinetochore mono-orientation. bqt1Δ mutation also increased equational segregation in haploid rec12+ cells (Fig 6D and 6E), indicating that the increase was not attributed to loss of Rec12 functions. Furthermore, MBC treatment also increased equational segregation (Fig 6F). All these results support the idea that impairment of telomere clustering causes inhibition of kinetochore disassembly that is required for establishment of the meiosis-specific centromere properties.
SPB-recruited Taz1 promotes centromere detachment from the SPB
Telomere clustering causes recruitment of telomere-LINC connectors to the SPB (S7A Fig, Wild type). We therefore hypothesized that an SPB-recruited telomere-LINC connector(s) promotes centromere detachment. Among the telomere-LINC connectors, we suspected that Taz1 contributes to centromere detachment, because in the taz1Δ mutant, although telomere-SPB association was substantially retained (Fig 2B, taz1Δ), the observed inhibition of centromere detachment was not statistically different from that observed in bqt1Δ or rap1Δ cells during karyogamy (Figs 2D and 3C, S3B Fig), where telomere-SPB association was almost completely eliminated. To test this possibility, we constructed a Taz1 fragment that lacks the telomeric DNA-binding domain (Myb domain) [11, 57] and fused it with an mCherry fluorescent protein for its visualization and with the nuclear localization sequence for its nuclear localization (Taz1Δmyb; Fig 7A). In taz1Δ cells, Taz1Δmyb was expected to be localized at the SPB by interacting with SPB-localized Rap1 [11], but not with telomeres (S7A Fig, taz1Δ+Taz1Δmyb). If SPB recruitment of Taz1 is important, it should restore centromere detachment in taz1Δ cells.
In wild-type cells, Taz1Δmyb was localized in the nucleus during karyogamy with a very low or undetectable level of accumulation at telomeres or the SPB (Fig 7B, WT). Its weak SPB accumulation was probably due to the presence of endogenous intact Taz1. In taz1Δ cells, by contrast, Taz1Δmyb accumulated at the SPB (Fig 7B, taz1Δ, arrowheads) without restoring telomere-SPB association (S7B Fig, +Taz1Δmyb, taz1Δ). Importantly, Taz1Δmyb significantly decreased the percentage of cells with SPB-associated centromeres or Nuf2 signals (Fig 7C and 7D, +Taz1Δmyb, taz1Δ). This result supports the idea that defective SPB recruitment of Taz1 causes inhibition of centromere detachment in taz1Δ cells.
In bqt1Δ and rap1Δ cells, Taz1Δmyb failed to decrease cells with SPB-associated centromeres or Nuf2 signals (Fig 7C and 7D, +Taz1Δmyb). However, Taz1Δmyb did not accumulate at the SPB because Taz1 cannot directly interact with the LINC complex without Bqt1 or Rap1 [10] (Fig 7B, Taz1Δmyb, bqt1Δ), and it remained unclear if defective SPB recruitment of Taz1 is the cause of the inhibition in these cells. To elucidate this point, we artificially tethered Taz1Δmyb to the SPB by fusing it with almost the entire length of Sad1, a LINC component that constitutively localizes at the SPB (Taz1Δmyb-Sad1; Fig 7A; S7A Fig, bqt1Δ+Taz1Δmyb-Sad1). Taz1Δmyb-Sad1 did not affect cell growth (judged by cell viability and the doubling time) and centromere-SPB association during mitosis. Importantly, Taz1Δmyb-Sad1 accumulated at the SPB without restoring telomere-SPB association in bqt1Δ and rap1Δ cells, as well as in taz1Δ cells (Fig 7B and S7B Fig, +Taz1Δmyb-Sad1), and significantly decreased the percentage of cells with SPB-associated centromeres or Nuf2 signals (Fig 7C and 7D, +Taz1Δmyb-Sad1). These observations indicate that a lack of Taz1 at the SPB causes inhibition of centromere detachment and kinetochore disassembly in bqt1Δ, rap1Δ, and taz1Δ cells. Taking all these results together, we conclude that SPB-recruited Taz1 promotes centromere detachment from the SPB. It should be noted, however, that in bqt1Δ, rap1Δ, or taz1Δ cells expressing Taz1Δmyb-Sad1, the percentage of cells with SPB-associated centromeres or Nuf2 signals was slightly higher than that in wild-type cells (Fig 7C and 7D), suggesting that Taz1Δmyb-Sad1 does not completely restore centromere detachment.
Microtubules promote centromere detachment from the SPB independently of SPB-recruited Taz1
In mto1Δ or MBC-treated wild-type cells, although Taz1 is often recruited to the SPB by frequent telomere-SPB association (Figs 2B and 4A) [45], centromere detachment was substantially inhibited (Figs 2D and 4B). In addition, in mto1Δ zygotes, although Taz1Δmyb-Sad1 was localized at the SPB (Fig 7B, +Taz1Δmyb-Sad1, mto1Δ, arrowheads), it decreased the percentage of cells with SPB-associated centromeres or Nuf2 signals only slightly, and the decrease was not statistically significant (Fig 7C and 7D, +Taz1Δmyb-Sad1, mto1Δ). Likewise, in mto1Δ or MBC-treated haploid meiotic cells, Taz1Δmyb-Sad1 did not significantly affect centromere and Nuf2 localization (Fig 8A) as well as meiosis progression (S5D and S5E Fig, WT+Taz1Δmyb-Sad1 and mto1Δ+Taz1Δmyb-Sad1). These results suggest that microtubules contribute to the regulation of centromere detachment independently of Taz1.
To test this possibility, we treated haploid bqt1Δ cells, which are completely defective in SPB recruitment of Taz1, with MBC. MBC treatment increased the percentage of cells containing SPB-associated centromeres (Fig 8B, Cnp1, Δbqt1) without inhibiting meiosis progression (S5D Fig, bqt1Δ). Even with Taz1Δmyb-Sad1 expression, MBC treatment increased the percentage of cells with Nuf2 signals, as well as those with SPB-associated centromeres (Fig 8B, bqt1Δ+Taz1Δmyb-Sad1). From these results, we conclude that microtubules promote centromere detachment independently of SPB-recruited Taz1. Microtubules drive SPB movements, which cause horsetail nuclear movements. However, centromere detachment was not dependent on SPB movements because centromere detachment was not inhibited in dhc1Δ cells, which are defective in SPB movements [58] (S2 Fig).
Induction of centromere detachment causes spindle impairment in telomere clustering-defective cells
Our results show the presence of regulatory mechanisms that inhibit centromere detachment from the SPB in the absence of telomere-SPB association. However, the advantages of the mechanisms in meiosis are unclear. It was recently reported that defective telomere clustering causes impairment of spindle formation with detachment of the SPB from the nuclear membrane, and that centromere-SPB association restores spindle formation in the absence of telomere clustering [34, 35]. These facts suggest that meiotic spindle formation requires SPB association of either telomeres or centromeres, and that concurrent detachment of telomeres and centromeres from the SPB is harmful for spindle formation. The inhibitory mechanisms of centromere detachment may secure spindle formation by preventing concurrent detachment of centromeres and telomeres. To test this possibility, we observed spindle formation in taz1Δ and bqt1Δ mutants, which are partially and fully defective in telomere clustering, respectively (Fig 2B), and examined the effects of Taz1Δmyb-Sad1 on spindle formation. If spindle formation requires SPB association of either telomeres or centromeres, Taz1Δmyb-Sad1-dependent elimination of centromere-SPB association should cause impairment of spindle formation in telomere clustering-defective cells, and the extents of the resultant impairments should be correlated with the extents of telomere-clustering defects.
In wild-type cells, meiosis I and II occurred sequentially with the formation of one and two spindles, respectively (Fig 9A, WT; S5 Movie), and Taz1Δmyb-Sad1 only marginally compromised spindle formation (Fig 9B, WT). In taz1Δ cells, spindle impairment was not detected, while, in bqt1Δ cells, impaired spindle formation together with detachment of the SPB from the nuclear periphery were observed in about half of cases, as reported previously [34] (Fig 9A and 9B, +None; S6 Movie) (we cannot exclude the possibility that the detached SPBs remained connected with the nucleus by Cut11-lacking nuclear membrane). Notably, Taz1Δmyb-Sad1 induced or increased spindle impairment together with SPB detachment from the nuclear periphery in taz1Δ and bqt1Δ cells (Fig 9A and 9B, +Taz1Δmyb-Sad1; S7 Movie), supporting the importance of centromere-SPB association for spindle formation. In addition, the extents of spindle impairment were correlated with the extents of defective telomere clustering; telomere clustering was more severely impaired in bqt1Δ cells than in taz1Δ cells (Fig 9B, +Taz1Δmyb-Sad1). These results support the idea that meiotic spindle formation requires SPB association of either telomeres or centromeres, and that the inhibitory mechanisms of centromere detachment secure spindle formation by preventing the concurrent detachment of centromeres and telomeres. The SPB was frequently missing at one (monopolar) or both (nonpolar) spindle poles (Fig 9A and 9B; S6 and S7 Movies). This may mean that telomere/centromere-SPB association is critical for anchoring the SPB to the spindle pole.
Discussion
Taz1- and microtubule-dependent regulation of centromere detachment from the SPB
In this study, we showed that kinetochore disassembly-dependent centromere detachment from the SPB is inhibited when telomere clustering is compromised during bouquet formation in S. pombe. Two lines of evidence show that SPB recruitment of Taz1 promotes centromere detachment (Fig 10A). First, in taz1Δ cells, despite occasional SPB association of telomeres, centromere detachment was greatly inhibited. Second, Taz1Δmyb-Sad1 alleviated the inhibition without restoring telomere clustering. We also found that in addition to Taz1, microtubules contribute to centromere detachment (Fig 10A). This conclusion was drawn from the fact that centromere detachment was inhibited by introduction of mto1Δ mutation or MBC treatment.
Two facts indicate that the contribution of microtubules is Taz1-independent. First, in cells with a disorganized microtubule network, despite occasional recruitment of Taz1 to the SPB, centromere detachment was inhibited to a level comparable to that in cells in which SPB recruitment of Taz1 was completely defective. Second, Taz1Δmyb-Sad1 failed to restore centromere detachment in mto1Δ or MBC-treated cells. Thus, telomere clustering-dependent SPB recruitment of Taz1 and microtubules independently promote centromere detachment in bouquet formation. Taz1- and microtubule-dependent regulatory mechanisms probably inhibit centromere detachment when telomere clustering is impaired.
One likely scenario for Taz1-dependent centromere regulation is that Taz1 recruits a factor(s) to the SPB that promotes centromere detachment by inducing dissociation of outer kinetochore complexes from the centromere and SPB. The promoting factor is perhaps activated or induced by mating pheromone-dependent MAP kinase because, in the absence of mating pheromone signaling, centromeres remain attached to the SPB despite clustering of telomeres [39]. Aurora kinase is a potential candidate for the modifying factor because this kinase induces centromere detachment from the SPB in S. cerevisiae [60, 61]. Another candidate is Polo-like kinase because it regulates meiotic kinetochore mono-orientation and centromere cohesion [62]. However, it is currently unclear if these kinases contribute to centromere detachment.
Although Taz1 is important, we cannot exclude the possibility that a different telomere-associated factor(s) additionally contributes to centromere detachment. Taz1Δmyb-Sad1 did not appear to completely restore centromere detachment in the telomere clustering-defective mutants (Fig 7C and 7D). Furthermore, the retention level of SPB-centromere association or Nuf2/Mis12 centromere localization in the taz1Δ mutant was slightly lower than that in the bqt1Δ or rap1Δ mutant (Figs 2D and 3C, S3B Fig, Horsetail). These facts may mean the contribution of a different telomere-associated factor to centromere detachment.
How microtubules contribute to centromere detachment remains elusive. Given the requirement of telomere- and/or SPB-nucleated microtubules for telomere clustering, we speculate that efficient centromere detachment requires the telomere/SPB-nucleated microtubules. In mto1Δ cells, γ-TuC telomere/SPB localization and telomere/SPB-microtubule interaction are not completely eliminated [45], and the remaining telomere/SPB-nucleated microtubules may account for why inhibition of kinetochore disassembly appeared to be weaker in mto1Δ cells than in MBC-treated cells. It is possible that the telomere/SPB-nucleated microtubules recruit a cytoplasmic factor(s) to telomeres and/or the SPB, which activates a centromere detachment-promoting factor in the nucleus, perhaps via the LINC. Alternatively, microtubule-lacking, LINC-accumulated telomeres may generate inhibitory signals for centromere detachment, as spindle-unattached centromeres do for metaphase-anaphase transition in the spindle assembly checkpoint pathway. In either case, the regulatory mechanism is probably different from the Taz1-dependent mechanism because the localization patterns of retained kinetochore components differ between cells lacking telomere-LINC connectors and those defective in microtubule formation (Figs 3D and 4D, S3C Fig).
Impairment of meiotic centromere formation by telomere-clustering defects
Kinetochore disassembly is thought to be required for establishment of kinetochore mono-orientation and protection of centromere cohesion [39, 40]. Our finding that equational segregation of sister chromatids at meiosis I increased in chiasma-lacking, telomere clustering-defective cells, where kinetochore disassembly is inhibited, supported this idea. In telomere clustering-defective cells, kinetochore mono-orientation is probably compromised because equational segregation is increased in sgo1Δ rec12Δ zygotes. It was recently reported that the centromeric histone H3 variant Cnp1 and the heterochromatin protein 1 orthologue Swi6 frequently fail to localize at centromeres in telomere clustering-defective cells [48]. This may mean that kinetochore disassembly also contributes to the proper localization of central centromeric components, and that impaired centromere localization of the central components may cause kinetochore mono-orientation defects. However, if inhibition of kinetochore disassembly induces Cnp1 delocalization, it probably occurs after the horsetail stage because the number of Cnp1 signals was increased during the horsetail stage in the bqt1Δ mutant.
Importance of a regulatory link between centromere detachment and telomere clustering for spindle formation
We showed that Taz1Δmyb-Sad1 induces or increases impairment of spindle formation in telomere clustering-defective taz1Δ and bqt1Δ cells. Taz1Δmyb-Sad1 induced centromere detachment in these cells; therefore, retention of centromere-SPB association is probably important for spindle formation in the absence of telomere-SPB association. This finding agrees with previous findings that defective telomere clustering causes spindle impairment and that SPB association of centromeres can substitute for SPB association of telomeres and promote spindle formation [34, 35]. Considering these facts together with the strong correlation of the extents of spindle defects with those of defective telomere/centromere-SPB association, we conclude that concurrent detachment of both telomeres and centromeres from the SPB causes spindle impairment, and propose that the Taz1- and microtubule-dependent inhibitory mechanisms of centromere detachment secure proper spindle formation by preventing such harmful detachment (Fig 10B). Microtubule disruption is caused by various environmental factors such as low temperature and osmotic stress; therefore, telomere clustering is probably often inhibited in nature. Despite the inhibition of meiotic centromere formation, cells may have evolved the inhibitory mechanisms of centromere detachment to secure spindle formation.
How telomere/centromere-SPB association contributes to spindle formation is unclear. It was reported that loss of telomere-SPB association leads to decrease in Sad1 at the SPB, and that forced SPB interaction of centromeres restores SPB localization of Sad1 [35]. Given these observations, it was suggested that telomere/centromere-SPB association is required for proper Sad1 localization at the SPB. The decrease in Sad1 at the SPB may account for the dissociation of the SPB from the spindle pole as well as from the nuclear periphery observed in our analyses. Because abolishment of SPB movements restores spindle formation in telomere clustering-defective cells [63], in the absence of telomere/centromere-SPB association, SPB movements may disrupt Sad1 interaction with the nuclear membrane, reducing Sad1 localization at the SPB. Alternatively, defective SPB recruitment of telomere- or centromere-associated factors that regulate Sad1 localization may cause the reduction.
Several facts raise the possibility that similar regulatory mechanisms are present in other organisms. First, meiotic telomere clustering depends on the LINC complexes in other organisms [8, 42, 43]. Second, in mouse oocytes, kinetochore disassembly probably also occurs, because some of the outer kinetochore complexes are not localized at centromeres before meiotic divisions [64]. Third, a telomere-binding protein, Ndj1, which contributes to telomere clustering, regulates meiotic spindle formation by interacting with the SUN-domain protein Mps3 in S. cerevisiae [18, 19, 65, 66], suggesting the presence of a regulatory relationship between telomeres and spindle formation. Although these facts suggest conservation of the mechanisms, at least in S. cerevisiae, microtubule-dependent regulation of centromere detachment is apparently missing because microtubule disruption causes centromere detachment from the SPB and induces meiotic centromere formation unlike the situation in S. pombe [41]. Although conservation of the regulatory mechanisms is currently unclear, there is no doubt that our findings contribute to understanding the mechanisms of meiosis, because telomere and centromere positions play crucial roles in proper meiotic chromosome segregation. Furthermore, chromosome positioning changes dynamically during development and differentiation and contributes to various chromosomal events in many different organisms [1–5], and our findings may also be relevant for understanding the chromosome positioning-dependent mechanisms that regulate development and differentiation of other organisms.
Materials and Methods
Yeast strains, media, basic genetic methods, and visualization of intracellular components
The fission yeast strains used in this study are shown in S1 Table. The media and basic genetic manipulation methods used in this study were described by Moreno et al. [67]. The deletion alleles of bqt1+, rap1+, taz1+, and mto1+ were described previously [10, 11, 13, 68]. Visualization of the sod2+ and cen2 loci, Cnp1, Nuf2, and microtubules was described previously [40, 45, 50, 69, 70]. The fusion gene of mis12+ and GFP was obtained from the Yeast Genetic Resource Center.
Sfi1 was visualized as follows. A DNA fragment encoding mCherry and the PTET terminator was amplified by PCR using the oligonucleotide primers 5´-ACGCGTCGACGAAGATCTTCGGATCCCCGGGTTAATTAAC-3´ and 5´-GGGGTACCATATTACCCTGTTATCCCTAGCG-3´, and an mCherry-bearing plasmid as a template, and inserted between the SalI and KpnI sites of an integration vector, pYC36, which transforms lys1-131 cells into lys1+ cells when it is integrated [71]. The resultant plasmid was digested with SmaI and SacII and ligated with a DNA fragment coding the sfi1+ gene and its promoter, which was amplified by PCR using the synthetic oligonucleotide primers, 5´-TCCCCGCGGGGCATTGTATTTGTCAATACCCA-3´ and 5’-AAAGGCCTACGGGTATTAGGAGGTATAGGC-3’, and the fission yeast genomic DNA as a template, and digested with SacII and StuI. The resultant plasmid pJM1 was introduced into lys1-131 cells, and integrants were selected by the lys+ phenotype. Alternatively, C-terminal mCherry-tagged Sfi1 was generated by the two-step PCR-based method [72]. DNA fragments encoding the Sfi1 C-terminus-coding region or the sfi1+ terminator were amplified by PCR using two sets of synthetic oligonucleotide primers (5´-TTTCAATATTAGTGATTGGAAGCG-3´ and 5´-TTAATTAACCCGGGGATACGGGTATTAGGAGGTATAGGC-3´; 5´-TTTTCGCCTCGACATCATCTCATTTACGATTGACGGAGAGAGT-3´ and 5´-ATACGTATTTCATTTTTGTAAATTTTTC-3´) and genomic DNA as a template. The mCherry module was then amplified by PCR using the two PCR products as primers and pHM22 [45] as a template. The resulting PCR product was introduced into cells, and integrants were selected by resistance to the antibiotic nourseothricin (Werner Bioagents, Jena, Germany) and confirmed by PCR and microscopic observation.
For Mrc1 visualization, a DNA fragment encoding the mrc1 gene and its promoter was PCR-amplified from fission yeast genomic DNA using oligonucleotide primers, 5´-TCCCCGCGGTCGAAAGGGTACACAAGCGGA-3´ and 5´-AAGGCCTGTCAAAGTCCGAGTAATTATTCAA-3´. The amplified fragment was digested with SacII and StuI and inserted between the SacII and SmaI sites of an mCherry-coding integration plasmid, pHM4 [45], yielding pAH8, which encodes the Mrc1-mCherry fusion. Mrc1 was visualized by introducing pAH8 into cells.
Analysis of chromosome positioning and kinetochore complex localization in zygotic meiosis
Cells grown on YES solid medium at 30°C were transferred to ME solid medium and induced to enter meiosis by incubation at 25°C for 14–18 h. Nuclear DNA in meiotic zygotes was stained with DNA-specific Hoechst 33342 dye as described previously [58]. Images of the cells at seven focal planes were taken through a 60×/1.42 NA Plan Apo oil immersion objective lens using an Olympus IX71 inverted microscope (Olympus Corp., Tokyo, Japan) equipped with a cooled charge-coupled device camera (CoolSNAP-HQ2; Nippon Roper Co. Ltd., Tokyo, Japan). Obtained images were processed by deconvolution and analyzed using MetaMorph (version 7) software (Molecular Devices Japan, Inc., Tokyo, Japan).
Synchronous induction of meiosis in haploid cells and MBC treatment
Haploid cells bearing both mating-type genes were grown in liquid YES medium. They were then induced to enter meiosis by incubation at 30°C in liquid EMM medium lacking a nitrogen source (EMM-N), and treated with MBC, as described previously [45]. For monitoring meiosis progression, 50 μl of the culture was harvested every hour, and nuclear morphology was examined by staining DNA with Hoechst 33342.
Analysis of sister chromatid segregation at meiosis I
Segregation of sister chromatids in zygotic rec12 cells was examined as follows. Cells containing the GFP-labeled cen2 locus and those lacking the GFP-labeled locus of the opposite mating type were grown on YES solid medium at 30°C and mated on ME solid medium at 25°C. For analyzing sister chromatid segregation in haploid meiotic cells, cells containing both mating-type genes were induced to undergo meiosis, as previously described [38, 40]. The meiotic cells were stained with Hoechst 33342, and GFP signals were examined in those containing two chromosomal DNA masses. When analyzing mto1Δ zygotes, microtubules were simultaneously visualized by mCherry-tagged atb2+, and only those forming a meiosis-I spindle were examined because two meiosis I-like chromosome masses were frequently formed due to defective karyogamy.
Expression of an N-terminal portion of Taz1 and its artificial tethering to the SPB
To express an N-terminal portion of Taz1 (Taz1Δmyb), a plasmid bearing a gene encoding Taz1Δmyb was constructed using the integration plasmid pMY23, which encodes an mCherry and taz1+ fusion and the aur1r gene as a selectable marker [45]. The region that encodes a myb domain of Taz1 in pMY23 was first deleted using the KOD-Plus-Mutagenesis Kit (Toyobo Co., Ltd., Osaka, Japan), generating pJM4. Briefly, a DNA fragment that encodes Taz1Δmyb and mCherry was amplified by PCR using two synthetic oligonucleotide primers, 5’-TTCTCTTCTCAGATTATCACCCTCT-3’ and 5’-AGGATCCCCGGGTTAATTAACAGCA-3’, and pMY23 as a template. After PCR, the template plasmid was removed by DpnI digestion, and the PCR product was circularized by self-ligation, generating pJM4. The sequence of pJM4 was confirmed by DNA sequencing. Then, a DNA fragment encoding the NLS together with a FLAG tag and a Swi6 chromo-domain was amplified by PCR using two synthetic oligonucleotide primers, 5’-GAAGATCTGGATCCTAGTCGCTTTGTTAAAT-3’ and 5’-CCTTAATTAAACCCGGGCCTTTCTTCTTTTTG-3’, and the plasmid Swi6CD-TOPO (a gift from Dr. Jun-ichi Nakayama, Nagoya City University, Nagoya, Aichi, Japan) as a template. The PCR product was digested with BglII and PacI and placed at the fusion site of Taz1Δmyb and mCherry by inserting it between the BamHI and PacI sites of pJM4. The DNA region encoding a FLAG tag and Swi6 chromo-domain was then removed from the resultant plasmid using the KOD-Plus-Mutagenesis Kit with two synthetic oligonucleotide primers, 5’-CCGCGGGTCGACAGGATCCAAACGGCCT-3’ and 5’-CCTTCTCTTCTCAGATTATCACCCC-3’, as described for pJM4. The resultant plasmid pAW9-1 encodes Taz1Δmyb tagged with NLS and mCherry at its C-terminus. Its sequence was confirmed by DNA sequencing. pAW9-1 was transformed into cells, and integrants were selected by resistance to the antibiotic aureobasidin A (Takara Bio. Inc., Otsu, Japan).
To tether Taz1Δmyb to the SPB, the plasmid pAH16-6, which encodes a fusion of Taz1Δmyb and Sad1, was constructed. pAH16-6 was constructed from a plasmid, pMY35, that encodes Sad1 with the HA epitope tag. pMY35 was constructed as follows. A DNA fragment encoding the HA epitope tag together with the adh1 terminator Tadh1 was amplified by PCR using synthetic oligonucleotide primers, 5’-ACGCGTCGACGAAGATCTTCGGATCCCCGGGTTAATTAAC-3’ and 5’-GGGGTACCATATTACCCTGTTATCCCTAGCG-3’, and pFA6a-3HA-kanMX6 [73] as a template. The PCR fragment was digested with KpnI and SalI and inserted between the corresponding sites of the integration plasmid pYC36, yielding pTO5. Then, a DNA fragment encoding Sad1 together with its own promoter was amplified by PCR using synthetic oligonucleotide primers, 5’-tccccgcggatgtatccctaacaaacgcaaaaa-3’ and 5’-ccccgctcgagagatgaatcttgacccgtattct-3’, and the fission yeast genomic DNA as a template, and inserted between the SacII and SalI sites of pTO5 after digestion with SacII and XhoI. A portion of the resultant plasmid that encodes Sad1 fused with the HA epitope tag was amplified by PCR using synthetic oligonucleotide primers, 5’-CCCAGTCACGACGTTGTAAAAC-3’ and 5’- CCCCGCTCGAGATATTACCCTGTTATCCCTAGCG-3’, digested with SacI and XhoI, and inserted between the SacI and SalI sites of the integration plasmid pTO2 bearing the aur1r gene as a selectable marker [45] to yield pMY35. To construct pAH16-6, a fusion gene of Taz1Δmyb and Sad1 was first constructed by inserting a Taz1Δmyb-encoding DNA fragment into pMY35. A portion of pAW9-1 that encodes Taz1Δmyb and the taz1+ promoter was amplified by PCR using synthetic oligonucleotide primers, 5’-ACGAGCTCATCGACAAGGCATGCGAAGC-3’ and 5’-CCGCTCGAGGATTCTCTTCTCAGATTATCACCC-3’, and inserted between the SacI and SalI sites of pMY35 after digestion with SacI and XhoI, yielding the plasmid pAH15-1. Then, pAH16-6 was constructed by replacing a part of pAH15-1 that encodes the HA epitope tag and Tadh1 with an mCherry- and TTET-coding region of the plasmid pHM4 [45]. The part of pHM4 was amplified by PCR using synthetic oligonucleotide primers, 5’- CCTTAATTAATAGCAAGGGCGAGGAGGATA-3’ and 5’- TCCCCGCGGGGATCTGCCGGTAGAGGT-3’, and inserted between the PacI and SacII sites of pAH15-1 after digestion with the corresponding enzymes, yielding pAH16-6. The sequence of pAH16-6 was confirmed by DNA sequencing. pAH16-6 was transformed into cells, and integrants were selected as described for pAW9-1.
Live cell analysis of spindle and Nuf2 dynamics
For analysis of spindle dynamics in diploid zygotes, cells were grown on solid YES medium and induced to enter meiosis by incubation for 14–18 h at 25°C on solid ME medium. Then, the cells were suspended in liquid EMM-N medium. For analysis of Nuf2 dynamics, Nuf2-expressing haploid cells bearing both mating-type genes were grown in liquid YES medium and induced to enter meiosis by incubation at 30°C in liquid EMM-N medium, as described previously [45]. For analysis of spindle or Nuf2 dynamics, a drop of the cell suspension was placed on the bottom of 35 mm glass-bottom dishes (Matsunami Glass Ind., Ltd.) coated with 5 mg/ml lectin (Sigma-Aldrich Japan, Inc.). The cells were observed through a 60×/1.42 NA Plan Apo oil immersion objective lens (Olympus Corp.) using a DeltaVision microscope system operated by SoftWoRx software or an IX71 inverted microscope operated by MetaMorph software. Time-lapse images of the cells were collected at eight focal planes spaced at 0.4 μm intervals every 5 or 10 min for spindle dynamics and at nine focal planes spaced at 0.5 μm intervals every 10 min for Nuf2 dynamics using a cooled CCD camera. During collection of time-lapse images, the cells were kept at 25°C. All obtained images were processed by deconvolution, and analyzed using MetaMorph or Priism/IVE software (available at http://www.msg.ucsf.edu/IVE/index.html).
Supporting Information
Acknowledgments
We thank Junko Kanoh, Yasushi Hiraoka, Jun-ichi Nakayama, and the National Bio-Resource Project of the MEXT, Japan for strains or reagents, and Akira Shinohara and Masahiro Terasawa for use of the DeltaVision microscope system or related technical support. We also thank Kayoko Tanaka, Akira Shinohara, Junko Kanoh, Takashi Ushimaru, and Takanori Oyoshi for critical reading of the manuscript and many helpful comments.
Data Availability
All relevant data are within the paper and its Supporting Information files.
Funding Statement
This work was supported by JSPS KAKENHI Grant Number 16K07248 (Grant-in-Aid for Scientific Research C), and performed under the Cooperative Research Program of Institute for Protein Research, Osaka University, CR-13/14/15/16-03. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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