A brief history of the discovery of PXR and CAR as xenobiotic receptors

Abstract

The nuclear receptors pregnane X receptor (PXR) and constitutive androstane receptor (CAR) were cloned and/or established as xenobiotic receptors in 1998. Due to their activities in the transcriptional regulation of phase I and phase II enzymes as well as drug transporters, PXR and CAR have been defined as the master regulators of xenobiotic responses. The discovery of PXR and CAR provides the essential molecular basis by which drugs and other xenobiotic compounds regulate the expression of xenobiotic enzymes and transporters. This article is intended to provide a historical overview on the discovery of PXR and CAR as xenobiotic receptors.

Graphical abstract

The discovery of the nuclear receptors pregnane X receptor (PXR) and constitutive androstane receptor (CAR) provides the essentail molecular basis by which drugs and other xenobiotic compounds regulate the expression of xenobiotic enzymes and transporters. This article is intended to provide a historical overview on the discovery of PXR and CAR as xenobiotic receptors.

1. Discovery of PXR as a xenobiotic receptor

The drug responsive regulation of the expression and activity of enzymes or transporters has long been appreciated. This regulation can affect the degree of absorption or elimination of drugs, and potentially alter the therapeutic or toxicological response to a drug. The molecular mechanisms by which drugs regulate enzyme and transporter expression have been elusive up until the discovery and characterization of the xenobiotic nuclear receptor pregnane X receptor (PXR) in 1998, which was independently cloned in the laboratories of Steve Kliewer¹ then at the Glaxo Wellcome, and Ron Evans² at the Salk Institute. The Kliewer laboratory discovered the mouse PXR from a gene fragment in the Washington University mouse expressed-sequence tag (EST) database by Gene Trapper solution hybridization cloning technology using a mouse liver cDNA library¹. PXR was named based on its activation by the pregnanes 21-carbon steroids¹. The Evans laboratory cloned the human PXR as a homolog of the Xenopus benzoate X receptors (BXR) from a human genomic library/liver cDNA library hybridized with a full-length cDNA encoding the Xenopus BXR, which was originally discovered in a screen for maternally expressed nuclear hormone receptors and cloned from a Xenopus egg cDNA library2, 3. The human PXR was originally named by the Evans laboratory as steroid and xenobiotic receptor (SXR) due to its activation by multiple natural and synthetic steroids as well as xenobiotics².

The discovery of PXR benefited from earlier work published by Phil Guzelian׳s laboratory4, 5 at the University of Colorado who suggested that there are “cellular factor” and defined “DNA element” that are responsible for the drug responsive regulation of the human CYP3A and rodent Cyp3a genes in hepatocytes. The consensus glucocorticoid-responsive “DNA element” identified by DNase I footprint turned out to be the PXR response element in the CYP3A gene promoter, which is occupied by the “cellular factor” PXR. Therefore, Cyp3a is considered a prototypical target gene of PXR. The in vivo role of PXR as a xenosensor has been firmly established through the creation and characterization of Pxr knockout mice, in which the Cyp3a induction in response to prototypic inducers, such as pregnenolone-16α-carbonitrile (PCN) and dexamethasone (DEX) was completely abolished6, 7. The identification of PXR as a xenosensor also provides a molecular basis for the species specificity of CYP3A induction⁴. hPXR and mPXR have high homology (95% at the amino acid level) in the DNA-binding domain (DBD), so they can share PXR binding sites found in promoters of the human CYP3A or rodent Cyp3a genes. In contrast, the homology in the ligand-binding domain (LBD) is significantly lower (73% at the amino acid level), which may have explained the ligand specificity between these two receptors. This notion was supported by the X-ray crystal structure analysis of the PXR LBD⁸. The spherical ligand-binding pocket of PXR was estimated to be at least twice as large as those of the other steroid hormone or retinoid receptors. In addition, the ligand-binding pocket of PXR was extremely hydrophobic and flexible. These structural features may have accounted for the promiscuity of this receptor in recognizing a wide range of xenobiotics⁸. Using both transfection and transgenic approaches, it has been functionally demonstrated that the species origin of the PXR receptor, rather than the promoter structure of CYP3A genes, dictates the species-specific pattern of CYP3A inducibility⁶. These findings also led to the creation of the so-called “humanized” hPXR transgenic mice, in which the mouse PXR in the liver was genetically replaced by its human counterpart hPXR. The humanized mice exhibit the human profile of drug response, such as their responsiveness to the human-specific inducer rifampicin and a lack of response to the rodent-specific inducer PCN⁶. Since the propensity of drugs to induce CYP3A and many other drug metabolizing enzymes are implicated in drug metabolism, drug–drug interactions, and drug toxicity, the humanized mice represent a major step toward creating humanized toxicological models that may aid in the development of safer drugs and nutraceuticals.

2. Characterization of CAR as a xenobiotic receptor

The xenobiotic receptor identity of the constitutive androstane receptor (CAR), a human orphan nuclear receptor cloned in David Moore׳s laboratory⁹ in 1994 whose physiological function was then unknown, was revealed shortly after the discovery of PXR in 1998. CAR was initially identified as MB67 from the human cDNA library using a degenerate oligonucleotide directed to the P-box sequence of the thyroid hormone receptor (TR)/retinoid acid receptor (RAR)/orphan receptor subgroup. The receptor was shown to activate a direct repeat spaced by five-nucleotides (DR-5) type of retinoid acid response element (RARE) in a ligand-independent manner, which can be further augmented by the addition of the heterodimerization partner retinoid X receptor (RXR)⁹. The mouse Car was cloned using the human CAR (MB67) cDNA probe in 1997¹⁰. The identity of CAR as a xenobiotic receptor was first hinted by the ability of selective androstane metabolites to inhibit its constitutive activity¹¹. The role of CAR in the positive xenobiotic regulation was suggested when CAR was shown to activate the phenobarbital response element (PBRE) found in the promoters of phenobarbital (PB)-inducible Cyp2b genes that were independent reported by several laboratories12, 13, 14. Masa Negishi׳s laboratory15, 16, 17, 18 at the National Institute of Environmental Health Sciences (NIEHS) was the first to purify CAR from mouse hepatocytes as a protein bound to the phenobarbital-responsive enhancer module (PBREM) of the Cyp2b10 gene, the mouse homolog of CYP2B, where it heterodimerizes with RXR. CYP2B is therefore a prototypical target gene of CAR. The in vivo xenobiotic function of CAR was firmly established through the creation and characterization of Car knockout mice. Disruption of the mouse CAR locus by homologous recombination resulted in the loss of PB and 1,4-bis(2-(3,5-dichloropyridyloxy))benzene (TCPOBOP)-activation of Cyp2b10 gene¹⁹.

3. Functions of PXR and CAR beyond being “xenobiotic receptors”

As xenobiotic receptors, PXR and CAR were initially shown to regulate the expression of phase I P450 enzymes, such as the CYP3A and CYP2B enzymes. Subsequent studies from many laboratories have led to the conclusion that PXR and CAR can function as master regulators of the xenobiotic response by regulating the expression of both the phase I and II drug metabolizing enzymes as well as the drug transporters. This regulation has broad implications in drug/xenobiotic metabolism, drug—drug interactions, and drug/xenobiotic toxicity, a topic that has been extensively reviewed20, 21, 22, 23. More recently, it has become clear that PXR- and CAR-mediated regulation of enzymes and transporters can not only impact drug metabolism, but also influence many physiological and disease pathways by affecting the homeostasis of endogenous chemicals, such as bile acids, bilirubin, steroid hormones, glucose, and lipids. These new developments suggest that the functions of PXR and CAR are actually beyond being the “xenobiotic receptors”. Fig. 1 summarizes the functions of PXR and CAR in both drug metabolism and energy metabolism, which is an example of the endobiotic functions of PXR and CAR.

Figure 1.

Summarized functions of PXR and CAR in drug metabolism and energy metabolism. (A) Regulation of drug metabolism by PXR and CAR is achieved by the binding of PXR-RXR or CAR-RXR heterodimers to their binding sites in the promoter regions of drug metabolizing enzymes and transporters. (B) PXR and CAR can regulate energy metabolism by directly regulating genes that are involved in energy metabolism, or by crosstaking with other transcriptional factors (TFs) that are implicated in energy metabolism.