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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1991 Mar 15;88(6):2380–2383. doi: 10.1073/pnas.88.6.2380

Splice junctions follow a 205-base ladder.

J S Beckmann 1, E N Trifonov 1
PMCID: PMC51235  PMID: 2006175

Abstract

Of all aspects of mRNA maturation the accuracy of intervening sequence excision and exon ligation is, perhaps, the most enigmatic. Attempts to identify the essential elements involved in this process have thus far not yielded any satisfactory answer as to what structural (sequence) features are prerequisite for the vital precision of this process. In our search for underlying structural orders we asked whether exons and introns had any positional preferences within a gene. This analysis led to the unexpected discovery that the DNA length is synchronized between successive 3' splicing sites as well as between successive 5' splicing sites, with a frame of approximately 205 base pairs. This observation reveals additional organization of genes in eukaryotes and, perhaps, links gene splicing with chromatin structure.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Barnett S. F., Friedman D. L., LeStourgeon W. M. The C proteins of HeLa 40S nuclear ribonucleoprotein particles exist as anisotropic tetramers of (C1)3 C2. Mol Cell Biol. 1989 Feb;9(2):492–498. doi: 10.1128/mcb.9.2.492. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Hawkins J. D. A survey on intron and exon lengths. Nucleic Acids Res. 1988 Nov 11;16(21):9893–9908. doi: 10.1093/nar/16.21.9893. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Mengeritsky G., Trifonov E. N. Nucleotide sequence-directed mapping of the nucleosomes. Nucleic Acids Res. 1983 Jun 11;11(11):3833–3851. doi: 10.1093/nar/11.11.3833. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Noll M., Zimmer S., Engel A., Dubochet J. Self-assembly of single and closely spaced nucleosome core particles. Nucleic Acids Res. 1980 Jan 11;8(1):21–42. doi: 10.1093/nar/8.1.21. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Ogawa T., Okazaki T. Discontinuous DNA replication. Annu Rev Biochem. 1980;49:421–457. doi: 10.1146/annurev.bi.49.070180.002225. [DOI] [PubMed] [Google Scholar]
  6. Smith C. W., Porro E. B., Patton J. G., Nadal-Ginard B. Scanning from an independently specified branch point defines the 3' splice site of mammalian introns. Nature. 1989 Nov 16;342(6247):243–247. doi: 10.1038/342243a0. [DOI] [PubMed] [Google Scholar]
  7. Zuckerkandl E. A general function of noncoding polynucleotide sequences. Mass binding of transconformational proteins. Mol Biol Rep. 1981 May 22;7(1-3):149–158. doi: 10.1007/BF00778746. [DOI] [PubMed] [Google Scholar]

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