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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2016 Nov 10;72(Pt 12):1783–1785. doi: 10.1107/S2056989016017734

Crystal structure of vilazodone hydro­chloride methanol monosolvate

Xiu-Rong Hu a,*, Jia-Li Ye b, Jian-Ming Gu a
PMCID: PMC5137608  PMID: 27980830

In the title compound, the protonated piperazine ring adopts a chair conformation while the indole ring plane is nearly perpendicular to the benzo­furan ring system.

Keywords: crystal structure, benzo­furan, indole, piperazine, hydrogen bonds

Abstract

In the title compound, C26H28N5O2 +·Cl·CH3OH {systematic name: 4-(2-carbamoyl-1-benzo­furan-5-yl)-1-[4-(5-cyano-1H-indol-3-yl)but­yl]piperazin-1-ium chloride methanol monosolvate}, the protonated piperazine ring adopts a chair conformation. The indole ring plane is nearly perpendicular to the benzo­furan ring system, with a dihedral angle of 85.77 (2)°. In the crystal, the organic cations, Cl anions and methanol solvent mol­ecules are linked by classical N—H⋯O and N—H⋯Cl hydrogen bonds, and weak C—H⋯O and C—H⋯π inter­actions into a three-dimensional supra­molecular architecture.

Chemical context  

Major depression disorder (MDD) currently ranks as the world’s fourth greatest cause of illness and is expected to rank second by the year 2020 according to WHO studies (Murray & Lopez, 1996). The title compound, viladozone hydro­chloride (marketed as Viibryd by Forest Pharmaceuticals), is a new treatment option for MDD. It was approved on January 21, 2011 by the FDA, licensed by Merck KGaA.graphic file with name e-72-01783-scheme1.jpg

Vilazodone hydro­chloride is a selective serotonin re-uptake inhibitor (SSRI) with properties that are most similar to those of citalopram, escitalopram (levapro), fluoveline, proxetin, and sertraline. The new drug differs from its predecessors by also acting as a partial agonist at serotonergic 5-HT1A receptors. The mechanism of the anti­depressant effect of vilazodone is thought to be related to its enhancement of serotonergic activity in the CNS through selective inhibition of serotonin re-uptake. Vilazodone binds with high affinity to the serotonin re-uptake site but not to the norepinephrine or dopamine re-uptake site. As a result, vilazodone potently and selectively inhibits the re-uptake of serotonin (Choi et al., 2012; Reed et al., 2012; Schwartz & Singh, 2012). Many patents and papers have been reported on the synthesis, polymorphism and bioavailability of this drug (Bathe et al., 2011; Heinrich & Böttcher, 2004; Leksic et al., 2013; Lu et al., 2012) but up till now, its three-dimensional structure has not been reported. This work concerns the crystal structure of vilazodone hydro­chloride methanol solvate, (I), studied at 275 K.

Structural commentary  

The title compound combines indole-butyl-amine and chromenonyl piperazine structural elements in a single mol­ecular entity. The asymmetric unit of (I) contains one protonated vilazodone cation, one Cl anion and one methanol mol­ecule (Fig. 1).

Figure 1.

Figure 1

The mol­ecular structure of the title compound, showing the atom-labelling scheme and displacement ellipsoids at 40% probability level. H atoms are shown as small circles of arbitrary radii.

The expected proton transfer from hydro­chloric acid to atom N3 of piperazine occurs; the H atom on the piperazine N3 atom was located unequivocally in the electron-density map. The six-membered piperazine ring adopts a chair conformation. The electron-withdrawing cyano group at position 5 on the indole is twisted out of the mean plane of the indole unit, as indicated by the relevant torsion angles N1—C1—C2—C7 and N1—C1—C2—C3 [144.3 (2) and 34.0 (2)°, respectively]. The conformation of the cyano group is similar to that of other drugs containing nitrile groups, such as bicalutamide and Febuxostat (Hu & Gu, 2005; Jiang et al., 2011). The indole moiety is connected by an n-butyl linker to the piperazine ring. The conformation of the butyl chain is of some inter­est. Three C atoms of the butyl group (C10, C11 and C12) are coplanar with atom C9 of the indole, as confirmed by the C9—C10—C11—C12 torsion angle of 179.2 (2)°, meanwhile atoms C11, C12 and C13 are coplanar with piperazine atom N3. A dihedral angle of 80.9 (2)° is formed between the mean planes of N3/C11–C13 and C9–C12. The dihedral angle between the C9–C12 mean plane and the indole plane is 10.0 (2)°. The second piperazine N atom, N4, is bonded to the benzo­furan ring. The formamide group is almost coplanar with the connected benzo­furan ring, making a dihedral angle of 2.53 (2)°. The indole ring is almost perpendicular to the benzo­furan ring, as indicated by the dihedral angle of 85.77 (2)° between them.

Supra­molecular features  

In the crystal, N3—H3A⋯Cl1, O3—H3B⋯Cl1 and N2—H2⋯O3i [symmetry code: (i) 1 − x, −y, 1 − z] hydrogen bonds (Table 1), connect the Cl ion to two neighbouring cations and a methanol mol­ecule, forming a mol­ecular dimer. Hydrogen bonds N5—H5A⋯Cl1ii [symmetry code: (ii) 1 − x, 2 − y, 2 − z] and N3—H3A⋯Cl1 link another two neighbouring cations and the Cl anion into a mol­ecular sheet. As a result, 28-membered rings with the graph-set motif Inline graphic(28) are generated (Fig. 2).

Table 1. Hydrogen-bond geometry (Å, °).

Cg5 is the centroid of the C18–C22 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯O3i 0.86 2.25 2.971 (3) 141
N3—H3A⋯Cl1 0.91 2.18 3.0787 (19) 172
N5—H5A⋯Cl1ii 0.86 2.42 3.250 (2) 162
N5—H5B⋯N1iii 0.86 2.33 3.151 (4) 160
O3—H3B⋯Cl1 0.82 2.38 3.195 (2) 171
C13—H13A⋯O2iv 0.97 2.33 3.272 (3) 164
C19—H19⋯O3v 0.93 2.55 3.348 (3) 144
C14—H14BCg5vi 0.97 2.48 3.393 (2) 156

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Figure 2.

Figure 2

Part of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity.

Synthesis and crystallization  

Vilazodone hydro­chloride was supplied by Hangzhou HEZE pharmaceutical Technology Co., Ltd. It was recrystallized from methanol solution, giving single crystals suitable for X-ray diffraction.

Refinement  

Experimental details including the crystal data, data collection and refinement are summarized in Table 2. The difference density indicated the presence of an H atom at atom N3, showing proton transfer from HCl to the amino group of the vilazodone ring. This H atom was placed in a calculated position with N—H = 0.91 Å and refined as riding with U iso(H) = 1.2U eq(N). All other H atoms were placed in calculated positions with O—H = 0.82, N—H = 0.86 and C—H = 0.93–0.98 Å, and included in the refinement in a riding model with U iso(H) = 1.2 or 1.5U eq(carrier atom).

Table 2. Experimental details.

Crystal data
Chemical formula C26H28N5O2 +·Cl·CH4O
M r 510.03
Crystal system, space group Triclinic, P Inline graphic
Temperature (K) 296
a, b, c (Å) 10.5572 (5), 11.0764 (4), 11.4408 (5)
α, β, γ (°) 104.622 (1), 97.327 (2), 90.695 (1)
V3) 1282.57 (10)
Z 2
Radiation type Mo Kα
μ (mm−1) 0.19
Crystal size (mm) 0.50 × 0.46 × 0.38
 
Data collection
Diffractometer Rigaku R-AXIS RAPID/ZJUG
Absorption correction Multi-scan (ABSCOR; Higashi, 1995)
T min, T max 0.91, 0.93
No. of measured, independent and observed [I > 2σ(I)] reflections 11090, 5000, 3865
R int 0.044
(sin θ/λ)max−1) 0.617
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.053, 0.154, 1.00
No. of reflections 5000
No. of parameters 328
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.31, −0.43

Computer programs: PROCESS-AUTO (Rigaku, 2006), CrystalStructure (Rigaku, 2007), SHELXS97 and SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows and WinGX (Farrugia, 2012).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989016017734/xu5894sup1.cif

e-72-01783-sup1.cif (25.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016017734/xu5894Isup2.hkl

e-72-01783-Isup2.hkl (239.9KB, hkl)

Supporting information file. DOI: 10.1107/S2056989016017734/xu5894Isup3.cml

CCDC reference: 1439516

Additional supporting information: crystallographic information; 3D view; checkCIF report

supplementary crystallographic information

Crystal data

C26H28N5O2+·Cl·CH4O Z = 2
Mr = 510.03 F(000) = 540
Triclinic, P1 Dx = 1.321 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 10.5572 (5) Å Cell parameters from 9260 reflections
b = 11.0764 (4) Å θ = 3.1–27.4°
c = 11.4408 (5) Å µ = 0.19 mm1
α = 104.622 (1)° T = 296 K
β = 97.327 (2)° Chunk, colorless
γ = 90.695 (1)° 0.50 × 0.46 × 0.38 mm
V = 1282.57 (10) Å3

Data collection

Rigaku R-AXIS RAPID/ZJUG diffractometer 5000 independent reflections
Radiation source: rotating anode 3865 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.044
Detector resolution: 10.00 pixels mm-1 θmax = 26.0°, θmin = 3.1°
ω scans h = −12→13
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −13→13
Tmin = 0.91, Tmax = 0.93 l = −14→14
11090 measured reflections

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053 H-atom parameters constrained
wR(F2) = 0.154 w = 1/[σ2(Fo2) + (0.0589P)2 + 0.9975P] where P = (Fo2 + 2Fc2)/3
S = 1.00 (Δ/σ)max < 0.001
5000 reflections Δρmax = 0.31 e Å3
328 parameters Δρmin = −0.43 e Å3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.096 (6)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.4328 (3) −0.1560 (3) −0.0343 (3) 0.0527 (7)
C2 0.4157 (2) −0.2028 (2) 0.0690 (2) 0.0456 (6)
C3 0.4277 (3) −0.3323 (3) 0.0575 (3) 0.0540 (7)
H3 0.4489 −0.3833 −0.0146 0.065*
C4 0.4084 (3) −0.3835 (2) 0.1517 (3) 0.0523 (6)
H4 0.4165 −0.4684 0.1448 0.063*
C5 0.3764 (2) −0.3039 (2) 0.2580 (2) 0.0428 (6)
C6 0.3641 (2) −0.1733 (2) 0.2719 (2) 0.0386 (5)
C7 0.3851 (2) −0.1233 (2) 0.1752 (2) 0.0422 (5)
H7 0.3788 −0.0382 0.1819 0.051*
C8 0.3290 (2) −0.2199 (2) 0.4438 (2) 0.0454 (6)
H8 0.3117 −0.2136 0.5227 0.054*
C9 0.3331 (2) −0.1218 (2) 0.3923 (2) 0.0400 (5)
C10 0.3143 (3) 0.0136 (2) 0.4511 (2) 0.0467 (6)
H10A 0.2362 0.0387 0.4109 0.056*
H10B 0.3847 0.0639 0.4386 0.056*
C11 0.3065 (3) 0.0404 (2) 0.5869 (2) 0.0473 (6)
H11A 0.3841 0.0139 0.6265 0.057*
H11B 0.2355 −0.0095 0.5989 0.057*
C12 0.2892 (3) 0.1776 (2) 0.6494 (2) 0.0483 (6)
H12A 0.3173 0.1928 0.7362 0.058*
H12B 0.3420 0.2305 0.6174 0.058*
C13 0.1509 (2) 0.2113 (2) 0.6295 (2) 0.0424 (5)
H13A 0.1223 0.1917 0.5425 0.051*
H13B 0.0993 0.1597 0.6640 0.051*
C14 0.1686 (2) 0.3853 (2) 0.8187 (2) 0.0401 (5)
H14A 0.2599 0.3756 0.8351 0.048*
H14B 0.1254 0.3311 0.8572 0.048*
C15 0.1392 (2) 0.5194 (2) 0.8736 (2) 0.0390 (5)
H15A 0.1624 0.5392 0.9614 0.047*
H15B 0.1901 0.5744 0.8422 0.047*
C16 −0.0349 (2) 0.5071 (2) 0.7125 (2) 0.0413 (5)
H16A 0.0126 0.5600 0.6760 0.050*
H16B −0.1251 0.5208 0.6952 0.050*
C17 −0.0103 (2) 0.3716 (2) 0.6576 (2) 0.0429 (5)
H17A −0.0620 0.3186 0.6905 0.051*
H17B −0.0352 0.3516 0.5700 0.051*
C18 −0.0372 (2) 0.6568 (2) 0.91099 (19) 0.0355 (5)
C19 −0.1686 (2) 0.6817 (2) 0.8901 (2) 0.0418 (5)
H19 −0.2227 0.6231 0.8320 0.050*
C20 −0.2185 (2) 0.7889 (2) 0.9523 (2) 0.0445 (6)
H20 −0.3044 0.8049 0.9362 0.053*
C21 −0.1359 (2) 0.8719 (2) 1.0397 (2) 0.0382 (5)
C22 −0.0071 (2) 0.8519 (2) 1.0647 (2) 0.0360 (5)
C23 0.0436 (2) 0.7436 (2) 0.9991 (2) 0.0376 (5)
H23 0.1301 0.7296 1.0141 0.045*
C24 −0.0552 (2) 1.0322 (2) 1.1871 (2) 0.0398 (5)
C25 0.0438 (2) 0.9582 (2) 1.1613 (2) 0.0411 (5)
H25 0.1280 0.9730 1.1986 0.049*
C26 −0.0613 (3) 1.1537 (2) 1.2777 (2) 0.0434 (6)
C27 0.5996 (3) 0.6981 (3) 0.6439 (3) 0.0676 (8)
H27A 0.5659 0.6832 0.5592 0.101*
H27B 0.6908 0.7113 0.6537 0.101*
H27C 0.5628 0.7708 0.6899 0.101*
Cl1 0.27357 (7) 0.52925 (6) 0.58111 (7) 0.0569 (2)
N1 0.4448 (3) −0.1220 (3) −0.1192 (2) 0.0661 (7)
N2 0.3540 (2) −0.32906 (18) 0.3639 (2) 0.0475 (5)
H2 0.3552 −0.4015 0.3784 0.057*
N3 0.12773 (18) 0.34606 (16) 0.68429 (16) 0.0348 (4)
H3A 0.1740 0.3935 0.6491 0.042*
N4 0.00394 (18) 0.54081 (17) 0.84536 (17) 0.0382 (4)
N5 −0.1755 (2) 1.20379 (19) 1.2756 (2) 0.0507 (5)
H5A −0.1858 1.2740 1.3258 0.061*
H5B −0.2388 1.1659 1.2240 0.061*
O1 −0.16729 (16) 0.98325 (15) 1.11414 (15) 0.0439 (4)
O2 0.0344 (2) 1.20077 (18) 1.34781 (18) 0.0616 (5)
O3 0.5686 (2) 0.5922 (2) 0.6869 (2) 0.0730 (6)
H3B 0.4921 0.5731 0.6673 0.110*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0437 (14) 0.0638 (17) 0.0454 (15) 0.0061 (12) 0.0123 (11) 0.0015 (13)
C2 0.0368 (12) 0.0535 (14) 0.0425 (13) 0.0042 (11) 0.0080 (10) 0.0039 (11)
C3 0.0483 (15) 0.0508 (15) 0.0524 (16) 0.0055 (12) 0.0119 (12) −0.0086 (12)
C4 0.0533 (15) 0.0368 (12) 0.0602 (17) 0.0061 (11) 0.0097 (13) −0.0011 (11)
C5 0.0392 (12) 0.0340 (11) 0.0506 (14) 0.0017 (10) 0.0045 (10) 0.0035 (10)
C6 0.0360 (12) 0.0348 (11) 0.0429 (13) 0.0047 (9) 0.0071 (10) 0.0050 (9)
C7 0.0415 (13) 0.0381 (12) 0.0445 (13) 0.0042 (10) 0.0064 (10) 0.0054 (10)
C8 0.0505 (14) 0.0387 (12) 0.0472 (14) 0.0044 (11) 0.0117 (11) 0.0087 (10)
C9 0.0420 (12) 0.0337 (11) 0.0427 (13) 0.0052 (10) 0.0092 (10) 0.0053 (9)
C10 0.0637 (16) 0.0337 (12) 0.0443 (14) 0.0110 (11) 0.0174 (12) 0.0077 (10)
C11 0.0580 (16) 0.0384 (12) 0.0439 (14) 0.0131 (11) 0.0079 (11) 0.0067 (10)
C12 0.0499 (15) 0.0416 (13) 0.0476 (14) 0.0096 (11) 0.0073 (11) −0.0001 (11)
C13 0.0510 (14) 0.0320 (11) 0.0404 (13) 0.0038 (10) 0.0081 (11) 0.0009 (9)
C14 0.0455 (13) 0.0399 (12) 0.0325 (12) 0.0075 (10) 0.0036 (10) 0.0051 (9)
C15 0.0384 (12) 0.0412 (12) 0.0325 (11) 0.0080 (10) 0.0004 (9) 0.0024 (9)
C16 0.0430 (13) 0.0402 (12) 0.0355 (12) 0.0082 (10) −0.0014 (10) 0.0031 (9)
C17 0.0409 (13) 0.0419 (12) 0.0391 (13) 0.0032 (10) −0.0010 (10) 0.0008 (10)
C18 0.0354 (11) 0.0383 (11) 0.0327 (11) 0.0056 (9) 0.0051 (9) 0.0084 (9)
C19 0.0377 (12) 0.0437 (12) 0.0391 (13) 0.0030 (10) 0.0017 (10) 0.0033 (10)
C20 0.0338 (12) 0.0493 (13) 0.0471 (14) 0.0101 (10) 0.0031 (10) 0.0074 (11)
C21 0.0397 (12) 0.0361 (11) 0.0386 (12) 0.0087 (9) 0.0071 (10) 0.0077 (9)
C22 0.0366 (12) 0.0364 (11) 0.0353 (11) 0.0051 (9) 0.0076 (9) 0.0082 (9)
C23 0.0331 (11) 0.0399 (12) 0.0377 (12) 0.0050 (9) 0.0052 (9) 0.0059 (9)
C24 0.0466 (13) 0.0366 (11) 0.0347 (12) 0.0041 (10) 0.0045 (10) 0.0070 (9)
C25 0.0420 (13) 0.0401 (12) 0.0386 (12) 0.0056 (10) 0.0037 (10) 0.0060 (10)
C26 0.0579 (15) 0.0357 (12) 0.0367 (12) 0.0063 (11) 0.0100 (11) 0.0078 (10)
C27 0.083 (2) 0.0565 (17) 0.0645 (19) 0.0146 (16) 0.0063 (16) 0.0187 (14)
Cl1 0.0675 (5) 0.0391 (3) 0.0694 (5) 0.0037 (3) 0.0318 (4) 0.0125 (3)
N1 0.0635 (16) 0.0842 (18) 0.0510 (14) 0.0089 (13) 0.0171 (12) 0.0133 (13)
N2 0.0535 (13) 0.0309 (10) 0.0589 (13) 0.0042 (9) 0.0116 (10) 0.0109 (9)
N3 0.0399 (10) 0.0318 (9) 0.0324 (10) 0.0030 (8) 0.0082 (8) 0.0059 (7)
N4 0.0390 (10) 0.0381 (10) 0.0335 (10) 0.0061 (8) 0.0032 (8) 0.0026 (8)
N5 0.0554 (13) 0.0395 (11) 0.0523 (13) 0.0102 (10) 0.0117 (10) 0.0003 (9)
O1 0.0441 (9) 0.0389 (9) 0.0451 (10) 0.0120 (7) 0.0075 (7) 0.0032 (7)
O2 0.0724 (13) 0.0489 (11) 0.0529 (11) 0.0061 (10) −0.0041 (10) −0.0003 (9)
O3 0.0716 (14) 0.0594 (13) 0.0920 (17) 0.0092 (11) 0.0003 (13) 0.0315 (12)

Geometric parameters (Å, º)

C1—N1 1.147 (4) C15—H15B 0.9700
C1—C2 1.435 (4) C16—N4 1.472 (3)
C2—C7 1.387 (3) C16—C17 1.513 (3)
C2—C3 1.416 (4) C16—H16A 0.9700
C3—C4 1.373 (4) C16—H16B 0.9700
C3—H3 0.9300 C17—N3 1.495 (3)
C4—C5 1.393 (3) C17—H17A 0.9700
C4—H4 0.9300 C17—H17B 0.9700
C5—N2 1.358 (3) C18—C23 1.393 (3)
C5—C6 1.424 (3) C18—N4 1.419 (3)
C6—C7 1.397 (3) C18—C19 1.419 (3)
C6—C9 1.432 (3) C19—C20 1.371 (3)
C7—H7 0.9300 C19—H19 0.9300
C8—C9 1.363 (3) C20—C21 1.378 (3)
C8—N2 1.370 (3) C20—H20 0.9300
C8—H8 0.9300 C21—O1 1.382 (3)
C9—C10 1.508 (3) C21—C22 1.385 (3)
C10—C11 1.520 (3) C22—C23 1.398 (3)
C10—H10A 0.9700 C22—C25 1.439 (3)
C10—H10B 0.9700 C23—H23 0.9300
C11—C12 1.531 (3) C24—C25 1.352 (3)
C11—H11A 0.9700 C24—O1 1.377 (3)
C11—H11B 0.9700 C24—C26 1.484 (3)
C12—C13 1.515 (4) C25—H25 0.9300
C12—H12A 0.9700 C26—O2 1.227 (3)
C12—H12B 0.9700 C26—N5 1.333 (3)
C13—N3 1.502 (3) C27—O3 1.431 (3)
C13—H13A 0.9700 C27—H27A 0.9600
C13—H13B 0.9700 C27—H27B 0.9600
C14—N3 1.493 (3) C27—H27C 0.9600
C14—C15 1.512 (3) N2—H2 0.8600
C14—H14A 0.9700 N3—H3A 0.9100
C14—H14B 0.9700 N5—H5A 0.8600
C15—N4 1.459 (3) N5—H5B 0.8600
C15—H15A 0.9700 O3—H3B 0.8200
N1—C1—C2 177.9 (3) N4—C16—H16A 109.5
C7—C2—C3 121.5 (2) C17—C16—H16A 109.5
C7—C2—C1 120.5 (2) N4—C16—H16B 109.5
C3—C2—C1 117.9 (2) C17—C16—H16B 109.5
C4—C3—C2 120.7 (2) H16A—C16—H16B 108.1
C4—C3—H3 119.6 N3—C17—C16 111.14 (18)
C2—C3—H3 119.6 N3—C17—H17A 109.4
C3—C4—C5 117.8 (2) C16—C17—H17A 109.4
C3—C4—H4 121.1 N3—C17—H17B 109.4
C5—C4—H4 121.1 C16—C17—H17B 109.4
N2—C5—C4 129.9 (2) H17A—C17—H17B 108.0
N2—C5—C6 107.5 (2) C23—C18—N4 123.0 (2)
C4—C5—C6 122.6 (2) C23—C18—C19 118.9 (2)
C7—C6—C5 118.6 (2) N4—C18—C19 118.0 (2)
C7—C6—C9 134.4 (2) C20—C19—C18 122.4 (2)
C5—C6—C9 107.0 (2) C20—C19—H19 118.8
C2—C7—C6 118.8 (2) C18—C19—H19 118.8
C2—C7—H7 120.6 C19—C20—C21 117.1 (2)
C6—C7—H7 120.6 C19—C20—H20 121.5
C9—C8—N2 111.1 (2) C21—C20—H20 121.5
C9—C8—H8 124.5 C20—C21—O1 126.2 (2)
N2—C8—H8 124.5 C20—C21—C22 123.0 (2)
C8—C9—C6 105.7 (2) O1—C21—C22 110.7 (2)
C8—C9—C10 127.3 (2) C21—C22—C23 119.5 (2)
C6—C9—C10 127.0 (2) C21—C22—C25 105.5 (2)
C9—C10—C11 113.6 (2) C23—C22—C25 134.9 (2)
C9—C10—H10A 108.8 C18—C23—C22 119.1 (2)
C11—C10—H10A 108.8 C18—C23—H23 120.5
C9—C10—H10B 108.8 C22—C23—H23 120.5
C11—C10—H10B 108.8 C25—C24—O1 112.0 (2)
H10A—C10—H10B 107.7 C25—C24—C26 131.2 (2)
C10—C11—C12 114.8 (2) O1—C24—C26 116.9 (2)
C10—C11—H11A 108.6 C24—C25—C22 106.4 (2)
C12—C11—H11A 108.6 C24—C25—H25 126.8
C10—C11—H11B 108.6 C22—C25—H25 126.8
C12—C11—H11B 108.6 O2—C26—N5 124.6 (2)
H11A—C11—H11B 107.6 O2—C26—C24 120.2 (2)
C13—C12—C11 111.4 (2) N5—C26—C24 115.2 (2)
C13—C12—H12A 109.3 O3—C27—H27A 109.5
C11—C12—H12A 109.3 O3—C27—H27B 109.5
C13—C12—H12B 109.3 H27A—C27—H27B 109.5
C11—C12—H12B 109.3 O3—C27—H27C 109.5
H12A—C12—H12B 108.0 H27A—C27—H27C 109.5
N3—C13—C12 114.26 (19) H27B—C27—H27C 109.5
N3—C13—H13A 108.7 C5—N2—C8 108.8 (2)
C12—C13—H13A 108.7 C5—N2—H2 125.6
N3—C13—H13B 108.7 C8—N2—H2 125.6
C12—C13—H13B 108.7 C14—N3—C17 109.46 (17)
H13A—C13—H13B 107.6 C14—N3—C13 112.72 (17)
N3—C14—C15 112.17 (18) C17—N3—C13 110.61 (17)
N3—C14—H14A 109.2 C14—N3—H3A 108.0
C15—C14—H14A 109.2 C17—N3—H3A 108.0
N3—C14—H14B 109.2 C13—N3—H3A 108.0
C15—C14—H14B 109.2 C18—N4—C15 115.32 (18)
H14A—C14—H14B 107.9 C18—N4—C16 116.13 (18)
N4—C15—C14 111.40 (19) C15—N4—C16 110.43 (18)
N4—C15—H15A 109.3 C26—N5—H5A 120.0
C14—C15—H15A 109.3 C26—N5—H5B 120.0
N4—C15—H15B 109.3 H5A—N5—H5B 120.0
C14—C15—H15B 109.3 C24—O1—C21 105.34 (17)
H15A—C15—H15B 108.0 C27—O3—H3B 109.5
N4—C16—C17 110.67 (19)
C7—C2—C3—C4 0.4 (4) O1—C21—C22—C25 0.1 (3)
C1—C2—C3—C4 −177.9 (3) N4—C18—C23—C22 −175.9 (2)
C2—C3—C4—C5 0.2 (4) C19—C18—C23—C22 0.5 (3)
C3—C4—C5—N2 −179.1 (3) C21—C22—C23—C18 −1.0 (3)
C3—C4—C5—C6 −0.4 (4) C25—C22—C23—C18 178.5 (2)
N2—C5—C6—C7 178.9 (2) O1—C24—C25—C22 −0.5 (3)
C4—C5—C6—C7 −0.1 (4) C26—C24—C25—C22 180.0 (2)
N2—C5—C6—C9 0.1 (3) C21—C22—C25—C24 0.2 (3)
C4—C5—C6—C9 −178.9 (2) C23—C22—C25—C24 −179.4 (2)
C3—C2—C7—C6 −0.9 (4) C25—C24—C26—O2 −2.5 (4)
C1—C2—C7—C6 177.4 (2) O1—C24—C26—O2 178.0 (2)
C5—C6—C7—C2 0.8 (3) C25—C24—C26—N5 177.7 (2)
C9—C6—C7—C2 179.1 (2) O1—C24—C26—N5 −1.8 (3)
N2—C8—C9—C6 −0.6 (3) C4—C5—N2—C8 178.4 (3)
N2—C8—C9—C10 −178.4 (2) C6—C5—N2—C8 −0.5 (3)
C7—C6—C9—C8 −178.2 (3) C9—C8—N2—C5 0.7 (3)
C5—C6—C9—C8 0.3 (3) C15—C14—N3—C17 −53.8 (2)
C7—C6—C9—C10 −0.5 (4) C15—C14—N3—C13 −177.34 (19)
C5—C6—C9—C10 178.1 (2) C16—C17—N3—C14 55.1 (2)
C8—C9—C10—C11 7.9 (4) C16—C17—N3—C13 179.89 (19)
C6—C9—C10—C11 −169.3 (2) C12—C13—N3—C14 −58.5 (3)
C9—C10—C11—C12 179.2 (2) C12—C13—N3—C17 178.6 (2)
C10—C11—C12—C13 80.7 (3) C23—C18—N4—C15 −1.8 (3)
C11—C12—C13—N3 −177.70 (19) C19—C18—N4—C15 −178.3 (2)
N3—C14—C15—N4 55.5 (3) C23—C18—N4—C16 −133.3 (2)
N4—C16—C17—N3 −58.2 (3) C19—C18—N4—C16 50.3 (3)
C23—C18—C19—C20 0.9 (4) C14—C15—N4—C18 168.90 (18)
N4—C18—C19—C20 177.5 (2) C14—C15—N4—C16 −57.0 (2)
C18—C19—C20—C21 −1.6 (4) C17—C16—N4—C18 −167.80 (19)
C19—C20—C21—O1 −178.4 (2) C17—C16—N4—C15 58.5 (2)
C19—C20—C21—C22 1.0 (4) C25—C24—O1—C21 0.6 (3)
C20—C21—C22—C23 0.3 (4) C26—C24—O1—C21 −179.84 (19)
O1—C21—C22—C23 179.77 (19) C20—C21—O1—C24 179.0 (2)
C20—C21—C22—C25 −179.3 (2) C22—C21—O1—C24 −0.4 (2)

Hydrogen-bond geometry (Å, º)

Cg5 is the centroid of the C18–C22 ring.

D—H···A D—H H···A D···A D—H···A
N2—H2···O3i 0.86 2.25 2.971 (3) 141
N3—H3A···Cl1 0.91 2.18 3.0787 (19) 172
N5—H5A···Cl1ii 0.86 2.42 3.250 (2) 162
N5—H5B···N1iii 0.86 2.33 3.151 (4) 160
O3—H3B···Cl1 0.82 2.38 3.195 (2) 171
C13—H13A···O2iv 0.97 2.33 3.272 (3) 164
C19—H19···O3v 0.93 2.55 3.348 (3) 144
C14—H14B···Cg5vi 0.97 2.48 3.393 (2) 156

Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x, −y+2, −z+2; (iii) −x, −y+1, −z+1; (iv) x, y−1, z−1; (v) x−1, y, z; (vi) −x, −y+1, −z+2.

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989016017734/xu5894sup1.cif

e-72-01783-sup1.cif (25.1KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016017734/xu5894Isup2.hkl

e-72-01783-Isup2.hkl (239.9KB, hkl)

Supporting information file. DOI: 10.1107/S2056989016017734/xu5894Isup3.cml

CCDC reference: 1439516

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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