In the title compound, the protonated piperazine ring adopts a chair conformation while the indole ring plane is nearly perpendicular to the benzofuran ring system.
Keywords: crystal structure, benzofuran, indole, piperazine, hydrogen bonds
Abstract
In the title compound, C26H28N5O2 +·Cl−·CH3OH {systematic name: 4-(2-carbamoyl-1-benzofuran-5-yl)-1-[4-(5-cyano-1H-indol-3-yl)butyl]piperazin-1-ium chloride methanol monosolvate}, the protonated piperazine ring adopts a chair conformation. The indole ring plane is nearly perpendicular to the benzofuran ring system, with a dihedral angle of 85.77 (2)°. In the crystal, the organic cations, Cl− anions and methanol solvent molecules are linked by classical N—H⋯O and N—H⋯Cl hydrogen bonds, and weak C—H⋯O and C—H⋯π interactions into a three-dimensional supramolecular architecture.
Chemical context
Major depression disorder (MDD) currently ranks as the world’s fourth greatest cause of illness and is expected to rank second by the year 2020 according to WHO studies (Murray & Lopez, 1996 ▸). The title compound, viladozone hydrochloride (marketed as Viibryd by Forest Pharmaceuticals), is a new treatment option for MDD. It was approved on January 21, 2011 by the FDA, licensed by Merck KGaA.
Vilazodone hydrochloride is a selective serotonin re-uptake inhibitor (SSRI) with properties that are most similar to those of citalopram, escitalopram (levapro), fluoveline, proxetin, and sertraline. The new drug differs from its predecessors by also acting as a partial agonist at serotonergic 5-HT1A receptors. The mechanism of the antidepressant effect of vilazodone is thought to be related to its enhancement of serotonergic activity in the CNS through selective inhibition of serotonin re-uptake. Vilazodone binds with high affinity to the serotonin re-uptake site but not to the norepinephrine or dopamine re-uptake site. As a result, vilazodone potently and selectively inhibits the re-uptake of serotonin (Choi et al., 2012 ▸; Reed et al., 2012 ▸; Schwartz & Singh, 2012 ▸). Many patents and papers have been reported on the synthesis, polymorphism and bioavailability of this drug (Bathe et al., 2011 ▸; Heinrich & Böttcher, 2004 ▸; Leksic et al., 2013 ▸; Lu et al., 2012 ▸) but up till now, its three-dimensional structure has not been reported. This work concerns the crystal structure of vilazodone hydrochloride methanol solvate, (I), studied at 275 K.
Structural commentary
The title compound combines indole-butyl-amine and chromenonyl piperazine structural elements in a single molecular entity. The asymmetric unit of (I) contains one protonated vilazodone cation, one Cl− anion and one methanol molecule (Fig. 1 ▸).
Figure 1.
The molecular structure of the title compound, showing the atom-labelling scheme and displacement ellipsoids at 40% probability level. H atoms are shown as small circles of arbitrary radii.
The expected proton transfer from hydrochloric acid to atom N3 of piperazine occurs; the H atom on the piperazine N3 atom was located unequivocally in the electron-density map. The six-membered piperazine ring adopts a chair conformation. The electron-withdrawing cyano group at position 5 on the indole is twisted out of the mean plane of the indole unit, as indicated by the relevant torsion angles N1—C1—C2—C7 and N1—C1—C2—C3 [144.3 (2) and 34.0 (2)°, respectively]. The conformation of the cyano group is similar to that of other drugs containing nitrile groups, such as bicalutamide and Febuxostat (Hu & Gu, 2005 ▸; Jiang et al., 2011 ▸). The indole moiety is connected by an n-butyl linker to the piperazine ring. The conformation of the butyl chain is of some interest. Three C atoms of the butyl group (C10, C11 and C12) are coplanar with atom C9 of the indole, as confirmed by the C9—C10—C11—C12 torsion angle of 179.2 (2)°, meanwhile atoms C11, C12 and C13 are coplanar with piperazine atom N3. A dihedral angle of 80.9 (2)° is formed between the mean planes of N3/C11–C13 and C9–C12. The dihedral angle between the C9–C12 mean plane and the indole plane is 10.0 (2)°. The second piperazine N atom, N4, is bonded to the benzofuran ring. The formamide group is almost coplanar with the connected benzofuran ring, making a dihedral angle of 2.53 (2)°. The indole ring is almost perpendicular to the benzofuran ring, as indicated by the dihedral angle of 85.77 (2)° between them.
Supramolecular features
In the crystal, N3—H3A⋯Cl1, O3—H3B⋯Cl1 and N2—H2⋯O3i [symmetry code: (i) 1 − x, −y, 1 − z] hydrogen bonds (Table 1 ▸), connect the Cl− ion to two neighbouring cations and a methanol molecule, forming a molecular dimer. Hydrogen bonds N5—H5A⋯Cl1ii [symmetry code: (ii) 1 − x, 2 − y, 2 − z] and N3—H3A⋯Cl1 link another two neighbouring cations and the Cl− anion into a molecular sheet. As a result, 28-membered rings with the graph-set motif
(28) are generated (Fig. 2 ▸).
Table 1. Hydrogen-bond geometry (Å, °).
Cg5 is the centroid of the C18–C22 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯O3i | 0.86 | 2.25 | 2.971 (3) | 141 |
| N3—H3A⋯Cl1 | 0.91 | 2.18 | 3.0787 (19) | 172 |
| N5—H5A⋯Cl1ii | 0.86 | 2.42 | 3.250 (2) | 162 |
| N5—H5B⋯N1iii | 0.86 | 2.33 | 3.151 (4) | 160 |
| O3—H3B⋯Cl1 | 0.82 | 2.38 | 3.195 (2) | 171 |
| C13—H13A⋯O2iv | 0.97 | 2.33 | 3.272 (3) | 164 |
| C19—H19⋯O3v | 0.93 | 2.55 | 3.348 (3) | 144 |
| C14—H14B⋯Cg5vi | 0.97 | 2.48 | 3.393 (2) | 156 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
; (vi)
.
Figure 2.
Part of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity.
Synthesis and crystallization
Vilazodone hydrochloride was supplied by Hangzhou HEZE pharmaceutical Technology Co., Ltd. It was recrystallized from methanol solution, giving single crystals suitable for X-ray diffraction.
Refinement
Experimental details including the crystal data, data collection and refinement are summarized in Table 2 ▸. The difference density indicated the presence of an H atom at atom N3, showing proton transfer from HCl to the amino group of the vilazodone ring. This H atom was placed in a calculated position with N—H = 0.91 Å and refined as riding with U iso(H) = 1.2U eq(N). All other H atoms were placed in calculated positions with O—H = 0.82, N—H = 0.86 and C—H = 0.93–0.98 Å, and included in the refinement in a riding model with U iso(H) = 1.2 or 1.5U eq(carrier atom).
Table 2. Experimental details.
| Crystal data | |
| Chemical formula | C26H28N5O2 +·Cl−·CH4O |
| M r | 510.03 |
| Crystal system, space group | Triclinic, P
|
| Temperature (K) | 296 |
| a, b, c (Å) | 10.5572 (5), 11.0764 (4), 11.4408 (5) |
| α, β, γ (°) | 104.622 (1), 97.327 (2), 90.695 (1) |
| V (Å3) | 1282.57 (10) |
| Z | 2 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.19 |
| Crystal size (mm) | 0.50 × 0.46 × 0.38 |
| Data collection | |
| Diffractometer | Rigaku R-AXIS RAPID/ZJUG |
| Absorption correction | Multi-scan (ABSCOR; Higashi, 1995 ▸) |
| T min, T max | 0.91, 0.93 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 11090, 5000, 3865 |
| R int | 0.044 |
| (sin θ/λ)max (Å−1) | 0.617 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.053, 0.154, 1.00 |
| No. of reflections | 5000 |
| No. of parameters | 328 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.31, −0.43 |
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989016017734/xu5894sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016017734/xu5894Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989016017734/xu5894Isup3.cml
CCDC reference: 1439516
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
Crystal data
| C26H28N5O2+·Cl−·CH4O | Z = 2 |
| Mr = 510.03 | F(000) = 540 |
| Triclinic, P1 | Dx = 1.321 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 10.5572 (5) Å | Cell parameters from 9260 reflections |
| b = 11.0764 (4) Å | θ = 3.1–27.4° |
| c = 11.4408 (5) Å | µ = 0.19 mm−1 |
| α = 104.622 (1)° | T = 296 K |
| β = 97.327 (2)° | Chunk, colorless |
| γ = 90.695 (1)° | 0.50 × 0.46 × 0.38 mm |
| V = 1282.57 (10) Å3 |
Data collection
| Rigaku R-AXIS RAPID/ZJUG diffractometer | 5000 independent reflections |
| Radiation source: rotating anode | 3865 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.044 |
| Detector resolution: 10.00 pixels mm-1 | θmax = 26.0°, θmin = 3.1° |
| ω scans | h = −12→13 |
| Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −13→13 |
| Tmin = 0.91, Tmax = 0.93 | l = −14→14 |
| 11090 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.053 | H-atom parameters constrained |
| wR(F2) = 0.154 | w = 1/[σ2(Fo2) + (0.0589P)2 + 0.9975P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.00 | (Δ/σ)max < 0.001 |
| 5000 reflections | Δρmax = 0.31 e Å−3 |
| 328 parameters | Δρmin = −0.43 e Å−3 |
| 0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.096 (6) |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.4328 (3) | −0.1560 (3) | −0.0343 (3) | 0.0527 (7) | |
| C2 | 0.4157 (2) | −0.2028 (2) | 0.0690 (2) | 0.0456 (6) | |
| C3 | 0.4277 (3) | −0.3323 (3) | 0.0575 (3) | 0.0540 (7) | |
| H3 | 0.4489 | −0.3833 | −0.0146 | 0.065* | |
| C4 | 0.4084 (3) | −0.3835 (2) | 0.1517 (3) | 0.0523 (6) | |
| H4 | 0.4165 | −0.4684 | 0.1448 | 0.063* | |
| C5 | 0.3764 (2) | −0.3039 (2) | 0.2580 (2) | 0.0428 (6) | |
| C6 | 0.3641 (2) | −0.1733 (2) | 0.2719 (2) | 0.0386 (5) | |
| C7 | 0.3851 (2) | −0.1233 (2) | 0.1752 (2) | 0.0422 (5) | |
| H7 | 0.3788 | −0.0382 | 0.1819 | 0.051* | |
| C8 | 0.3290 (2) | −0.2199 (2) | 0.4438 (2) | 0.0454 (6) | |
| H8 | 0.3117 | −0.2136 | 0.5227 | 0.054* | |
| C9 | 0.3331 (2) | −0.1218 (2) | 0.3923 (2) | 0.0400 (5) | |
| C10 | 0.3143 (3) | 0.0136 (2) | 0.4511 (2) | 0.0467 (6) | |
| H10A | 0.2362 | 0.0387 | 0.4109 | 0.056* | |
| H10B | 0.3847 | 0.0639 | 0.4386 | 0.056* | |
| C11 | 0.3065 (3) | 0.0404 (2) | 0.5869 (2) | 0.0473 (6) | |
| H11A | 0.3841 | 0.0139 | 0.6265 | 0.057* | |
| H11B | 0.2355 | −0.0095 | 0.5989 | 0.057* | |
| C12 | 0.2892 (3) | 0.1776 (2) | 0.6494 (2) | 0.0483 (6) | |
| H12A | 0.3173 | 0.1928 | 0.7362 | 0.058* | |
| H12B | 0.3420 | 0.2305 | 0.6174 | 0.058* | |
| C13 | 0.1509 (2) | 0.2113 (2) | 0.6295 (2) | 0.0424 (5) | |
| H13A | 0.1223 | 0.1917 | 0.5425 | 0.051* | |
| H13B | 0.0993 | 0.1597 | 0.6640 | 0.051* | |
| C14 | 0.1686 (2) | 0.3853 (2) | 0.8187 (2) | 0.0401 (5) | |
| H14A | 0.2599 | 0.3756 | 0.8351 | 0.048* | |
| H14B | 0.1254 | 0.3311 | 0.8572 | 0.048* | |
| C15 | 0.1392 (2) | 0.5194 (2) | 0.8736 (2) | 0.0390 (5) | |
| H15A | 0.1624 | 0.5392 | 0.9614 | 0.047* | |
| H15B | 0.1901 | 0.5744 | 0.8422 | 0.047* | |
| C16 | −0.0349 (2) | 0.5071 (2) | 0.7125 (2) | 0.0413 (5) | |
| H16A | 0.0126 | 0.5600 | 0.6760 | 0.050* | |
| H16B | −0.1251 | 0.5208 | 0.6952 | 0.050* | |
| C17 | −0.0103 (2) | 0.3716 (2) | 0.6576 (2) | 0.0429 (5) | |
| H17A | −0.0620 | 0.3186 | 0.6905 | 0.051* | |
| H17B | −0.0352 | 0.3516 | 0.5700 | 0.051* | |
| C18 | −0.0372 (2) | 0.6568 (2) | 0.91099 (19) | 0.0355 (5) | |
| C19 | −0.1686 (2) | 0.6817 (2) | 0.8901 (2) | 0.0418 (5) | |
| H19 | −0.2227 | 0.6231 | 0.8320 | 0.050* | |
| C20 | −0.2185 (2) | 0.7889 (2) | 0.9523 (2) | 0.0445 (6) | |
| H20 | −0.3044 | 0.8049 | 0.9362 | 0.053* | |
| C21 | −0.1359 (2) | 0.8719 (2) | 1.0397 (2) | 0.0382 (5) | |
| C22 | −0.0071 (2) | 0.8519 (2) | 1.0647 (2) | 0.0360 (5) | |
| C23 | 0.0436 (2) | 0.7436 (2) | 0.9991 (2) | 0.0376 (5) | |
| H23 | 0.1301 | 0.7296 | 1.0141 | 0.045* | |
| C24 | −0.0552 (2) | 1.0322 (2) | 1.1871 (2) | 0.0398 (5) | |
| C25 | 0.0438 (2) | 0.9582 (2) | 1.1613 (2) | 0.0411 (5) | |
| H25 | 0.1280 | 0.9730 | 1.1986 | 0.049* | |
| C26 | −0.0613 (3) | 1.1537 (2) | 1.2777 (2) | 0.0434 (6) | |
| C27 | 0.5996 (3) | 0.6981 (3) | 0.6439 (3) | 0.0676 (8) | |
| H27A | 0.5659 | 0.6832 | 0.5592 | 0.101* | |
| H27B | 0.6908 | 0.7113 | 0.6537 | 0.101* | |
| H27C | 0.5628 | 0.7708 | 0.6899 | 0.101* | |
| Cl1 | 0.27357 (7) | 0.52925 (6) | 0.58111 (7) | 0.0569 (2) | |
| N1 | 0.4448 (3) | −0.1220 (3) | −0.1192 (2) | 0.0661 (7) | |
| N2 | 0.3540 (2) | −0.32906 (18) | 0.3639 (2) | 0.0475 (5) | |
| H2 | 0.3552 | −0.4015 | 0.3784 | 0.057* | |
| N3 | 0.12773 (18) | 0.34606 (16) | 0.68429 (16) | 0.0348 (4) | |
| H3A | 0.1740 | 0.3935 | 0.6491 | 0.042* | |
| N4 | 0.00394 (18) | 0.54081 (17) | 0.84536 (17) | 0.0382 (4) | |
| N5 | −0.1755 (2) | 1.20379 (19) | 1.2756 (2) | 0.0507 (5) | |
| H5A | −0.1858 | 1.2740 | 1.3258 | 0.061* | |
| H5B | −0.2388 | 1.1659 | 1.2240 | 0.061* | |
| O1 | −0.16729 (16) | 0.98325 (15) | 1.11414 (15) | 0.0439 (4) | |
| O2 | 0.0344 (2) | 1.20077 (18) | 1.34781 (18) | 0.0616 (5) | |
| O3 | 0.5686 (2) | 0.5922 (2) | 0.6869 (2) | 0.0730 (6) | |
| H3B | 0.4921 | 0.5731 | 0.6673 | 0.110* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0437 (14) | 0.0638 (17) | 0.0454 (15) | 0.0061 (12) | 0.0123 (11) | 0.0015 (13) |
| C2 | 0.0368 (12) | 0.0535 (14) | 0.0425 (13) | 0.0042 (11) | 0.0080 (10) | 0.0039 (11) |
| C3 | 0.0483 (15) | 0.0508 (15) | 0.0524 (16) | 0.0055 (12) | 0.0119 (12) | −0.0086 (12) |
| C4 | 0.0533 (15) | 0.0368 (12) | 0.0602 (17) | 0.0061 (11) | 0.0097 (13) | −0.0011 (11) |
| C5 | 0.0392 (12) | 0.0340 (11) | 0.0506 (14) | 0.0017 (10) | 0.0045 (10) | 0.0035 (10) |
| C6 | 0.0360 (12) | 0.0348 (11) | 0.0429 (13) | 0.0047 (9) | 0.0071 (10) | 0.0050 (9) |
| C7 | 0.0415 (13) | 0.0381 (12) | 0.0445 (13) | 0.0042 (10) | 0.0064 (10) | 0.0054 (10) |
| C8 | 0.0505 (14) | 0.0387 (12) | 0.0472 (14) | 0.0044 (11) | 0.0117 (11) | 0.0087 (10) |
| C9 | 0.0420 (12) | 0.0337 (11) | 0.0427 (13) | 0.0052 (10) | 0.0092 (10) | 0.0053 (9) |
| C10 | 0.0637 (16) | 0.0337 (12) | 0.0443 (14) | 0.0110 (11) | 0.0174 (12) | 0.0077 (10) |
| C11 | 0.0580 (16) | 0.0384 (12) | 0.0439 (14) | 0.0131 (11) | 0.0079 (11) | 0.0067 (10) |
| C12 | 0.0499 (15) | 0.0416 (13) | 0.0476 (14) | 0.0096 (11) | 0.0073 (11) | −0.0001 (11) |
| C13 | 0.0510 (14) | 0.0320 (11) | 0.0404 (13) | 0.0038 (10) | 0.0081 (11) | 0.0009 (9) |
| C14 | 0.0455 (13) | 0.0399 (12) | 0.0325 (12) | 0.0075 (10) | 0.0036 (10) | 0.0051 (9) |
| C15 | 0.0384 (12) | 0.0412 (12) | 0.0325 (11) | 0.0080 (10) | 0.0004 (9) | 0.0024 (9) |
| C16 | 0.0430 (13) | 0.0402 (12) | 0.0355 (12) | 0.0082 (10) | −0.0014 (10) | 0.0031 (9) |
| C17 | 0.0409 (13) | 0.0419 (12) | 0.0391 (13) | 0.0032 (10) | −0.0010 (10) | 0.0008 (10) |
| C18 | 0.0354 (11) | 0.0383 (11) | 0.0327 (11) | 0.0056 (9) | 0.0051 (9) | 0.0084 (9) |
| C19 | 0.0377 (12) | 0.0437 (12) | 0.0391 (13) | 0.0030 (10) | 0.0017 (10) | 0.0033 (10) |
| C20 | 0.0338 (12) | 0.0493 (13) | 0.0471 (14) | 0.0101 (10) | 0.0031 (10) | 0.0074 (11) |
| C21 | 0.0397 (12) | 0.0361 (11) | 0.0386 (12) | 0.0087 (9) | 0.0071 (10) | 0.0077 (9) |
| C22 | 0.0366 (12) | 0.0364 (11) | 0.0353 (11) | 0.0051 (9) | 0.0076 (9) | 0.0082 (9) |
| C23 | 0.0331 (11) | 0.0399 (12) | 0.0377 (12) | 0.0050 (9) | 0.0052 (9) | 0.0059 (9) |
| C24 | 0.0466 (13) | 0.0366 (11) | 0.0347 (12) | 0.0041 (10) | 0.0045 (10) | 0.0070 (9) |
| C25 | 0.0420 (13) | 0.0401 (12) | 0.0386 (12) | 0.0056 (10) | 0.0037 (10) | 0.0060 (10) |
| C26 | 0.0579 (15) | 0.0357 (12) | 0.0367 (12) | 0.0063 (11) | 0.0100 (11) | 0.0078 (10) |
| C27 | 0.083 (2) | 0.0565 (17) | 0.0645 (19) | 0.0146 (16) | 0.0063 (16) | 0.0187 (14) |
| Cl1 | 0.0675 (5) | 0.0391 (3) | 0.0694 (5) | 0.0037 (3) | 0.0318 (4) | 0.0125 (3) |
| N1 | 0.0635 (16) | 0.0842 (18) | 0.0510 (14) | 0.0089 (13) | 0.0171 (12) | 0.0133 (13) |
| N2 | 0.0535 (13) | 0.0309 (10) | 0.0589 (13) | 0.0042 (9) | 0.0116 (10) | 0.0109 (9) |
| N3 | 0.0399 (10) | 0.0318 (9) | 0.0324 (10) | 0.0030 (8) | 0.0082 (8) | 0.0059 (7) |
| N4 | 0.0390 (10) | 0.0381 (10) | 0.0335 (10) | 0.0061 (8) | 0.0032 (8) | 0.0026 (8) |
| N5 | 0.0554 (13) | 0.0395 (11) | 0.0523 (13) | 0.0102 (10) | 0.0117 (10) | 0.0003 (9) |
| O1 | 0.0441 (9) | 0.0389 (9) | 0.0451 (10) | 0.0120 (7) | 0.0075 (7) | 0.0032 (7) |
| O2 | 0.0724 (13) | 0.0489 (11) | 0.0529 (11) | 0.0061 (10) | −0.0041 (10) | −0.0003 (9) |
| O3 | 0.0716 (14) | 0.0594 (13) | 0.0920 (17) | 0.0092 (11) | 0.0003 (13) | 0.0315 (12) |
Geometric parameters (Å, º)
| C1—N1 | 1.147 (4) | C15—H15B | 0.9700 |
| C1—C2 | 1.435 (4) | C16—N4 | 1.472 (3) |
| C2—C7 | 1.387 (3) | C16—C17 | 1.513 (3) |
| C2—C3 | 1.416 (4) | C16—H16A | 0.9700 |
| C3—C4 | 1.373 (4) | C16—H16B | 0.9700 |
| C3—H3 | 0.9300 | C17—N3 | 1.495 (3) |
| C4—C5 | 1.393 (3) | C17—H17A | 0.9700 |
| C4—H4 | 0.9300 | C17—H17B | 0.9700 |
| C5—N2 | 1.358 (3) | C18—C23 | 1.393 (3) |
| C5—C6 | 1.424 (3) | C18—N4 | 1.419 (3) |
| C6—C7 | 1.397 (3) | C18—C19 | 1.419 (3) |
| C6—C9 | 1.432 (3) | C19—C20 | 1.371 (3) |
| C7—H7 | 0.9300 | C19—H19 | 0.9300 |
| C8—C9 | 1.363 (3) | C20—C21 | 1.378 (3) |
| C8—N2 | 1.370 (3) | C20—H20 | 0.9300 |
| C8—H8 | 0.9300 | C21—O1 | 1.382 (3) |
| C9—C10 | 1.508 (3) | C21—C22 | 1.385 (3) |
| C10—C11 | 1.520 (3) | C22—C23 | 1.398 (3) |
| C10—H10A | 0.9700 | C22—C25 | 1.439 (3) |
| C10—H10B | 0.9700 | C23—H23 | 0.9300 |
| C11—C12 | 1.531 (3) | C24—C25 | 1.352 (3) |
| C11—H11A | 0.9700 | C24—O1 | 1.377 (3) |
| C11—H11B | 0.9700 | C24—C26 | 1.484 (3) |
| C12—C13 | 1.515 (4) | C25—H25 | 0.9300 |
| C12—H12A | 0.9700 | C26—O2 | 1.227 (3) |
| C12—H12B | 0.9700 | C26—N5 | 1.333 (3) |
| C13—N3 | 1.502 (3) | C27—O3 | 1.431 (3) |
| C13—H13A | 0.9700 | C27—H27A | 0.9600 |
| C13—H13B | 0.9700 | C27—H27B | 0.9600 |
| C14—N3 | 1.493 (3) | C27—H27C | 0.9600 |
| C14—C15 | 1.512 (3) | N2—H2 | 0.8600 |
| C14—H14A | 0.9700 | N3—H3A | 0.9100 |
| C14—H14B | 0.9700 | N5—H5A | 0.8600 |
| C15—N4 | 1.459 (3) | N5—H5B | 0.8600 |
| C15—H15A | 0.9700 | O3—H3B | 0.8200 |
| N1—C1—C2 | 177.9 (3) | N4—C16—H16A | 109.5 |
| C7—C2—C3 | 121.5 (2) | C17—C16—H16A | 109.5 |
| C7—C2—C1 | 120.5 (2) | N4—C16—H16B | 109.5 |
| C3—C2—C1 | 117.9 (2) | C17—C16—H16B | 109.5 |
| C4—C3—C2 | 120.7 (2) | H16A—C16—H16B | 108.1 |
| C4—C3—H3 | 119.6 | N3—C17—C16 | 111.14 (18) |
| C2—C3—H3 | 119.6 | N3—C17—H17A | 109.4 |
| C3—C4—C5 | 117.8 (2) | C16—C17—H17A | 109.4 |
| C3—C4—H4 | 121.1 | N3—C17—H17B | 109.4 |
| C5—C4—H4 | 121.1 | C16—C17—H17B | 109.4 |
| N2—C5—C4 | 129.9 (2) | H17A—C17—H17B | 108.0 |
| N2—C5—C6 | 107.5 (2) | C23—C18—N4 | 123.0 (2) |
| C4—C5—C6 | 122.6 (2) | C23—C18—C19 | 118.9 (2) |
| C7—C6—C5 | 118.6 (2) | N4—C18—C19 | 118.0 (2) |
| C7—C6—C9 | 134.4 (2) | C20—C19—C18 | 122.4 (2) |
| C5—C6—C9 | 107.0 (2) | C20—C19—H19 | 118.8 |
| C2—C7—C6 | 118.8 (2) | C18—C19—H19 | 118.8 |
| C2—C7—H7 | 120.6 | C19—C20—C21 | 117.1 (2) |
| C6—C7—H7 | 120.6 | C19—C20—H20 | 121.5 |
| C9—C8—N2 | 111.1 (2) | C21—C20—H20 | 121.5 |
| C9—C8—H8 | 124.5 | C20—C21—O1 | 126.2 (2) |
| N2—C8—H8 | 124.5 | C20—C21—C22 | 123.0 (2) |
| C8—C9—C6 | 105.7 (2) | O1—C21—C22 | 110.7 (2) |
| C8—C9—C10 | 127.3 (2) | C21—C22—C23 | 119.5 (2) |
| C6—C9—C10 | 127.0 (2) | C21—C22—C25 | 105.5 (2) |
| C9—C10—C11 | 113.6 (2) | C23—C22—C25 | 134.9 (2) |
| C9—C10—H10A | 108.8 | C18—C23—C22 | 119.1 (2) |
| C11—C10—H10A | 108.8 | C18—C23—H23 | 120.5 |
| C9—C10—H10B | 108.8 | C22—C23—H23 | 120.5 |
| C11—C10—H10B | 108.8 | C25—C24—O1 | 112.0 (2) |
| H10A—C10—H10B | 107.7 | C25—C24—C26 | 131.2 (2) |
| C10—C11—C12 | 114.8 (2) | O1—C24—C26 | 116.9 (2) |
| C10—C11—H11A | 108.6 | C24—C25—C22 | 106.4 (2) |
| C12—C11—H11A | 108.6 | C24—C25—H25 | 126.8 |
| C10—C11—H11B | 108.6 | C22—C25—H25 | 126.8 |
| C12—C11—H11B | 108.6 | O2—C26—N5 | 124.6 (2) |
| H11A—C11—H11B | 107.6 | O2—C26—C24 | 120.2 (2) |
| C13—C12—C11 | 111.4 (2) | N5—C26—C24 | 115.2 (2) |
| C13—C12—H12A | 109.3 | O3—C27—H27A | 109.5 |
| C11—C12—H12A | 109.3 | O3—C27—H27B | 109.5 |
| C13—C12—H12B | 109.3 | H27A—C27—H27B | 109.5 |
| C11—C12—H12B | 109.3 | O3—C27—H27C | 109.5 |
| H12A—C12—H12B | 108.0 | H27A—C27—H27C | 109.5 |
| N3—C13—C12 | 114.26 (19) | H27B—C27—H27C | 109.5 |
| N3—C13—H13A | 108.7 | C5—N2—C8 | 108.8 (2) |
| C12—C13—H13A | 108.7 | C5—N2—H2 | 125.6 |
| N3—C13—H13B | 108.7 | C8—N2—H2 | 125.6 |
| C12—C13—H13B | 108.7 | C14—N3—C17 | 109.46 (17) |
| H13A—C13—H13B | 107.6 | C14—N3—C13 | 112.72 (17) |
| N3—C14—C15 | 112.17 (18) | C17—N3—C13 | 110.61 (17) |
| N3—C14—H14A | 109.2 | C14—N3—H3A | 108.0 |
| C15—C14—H14A | 109.2 | C17—N3—H3A | 108.0 |
| N3—C14—H14B | 109.2 | C13—N3—H3A | 108.0 |
| C15—C14—H14B | 109.2 | C18—N4—C15 | 115.32 (18) |
| H14A—C14—H14B | 107.9 | C18—N4—C16 | 116.13 (18) |
| N4—C15—C14 | 111.40 (19) | C15—N4—C16 | 110.43 (18) |
| N4—C15—H15A | 109.3 | C26—N5—H5A | 120.0 |
| C14—C15—H15A | 109.3 | C26—N5—H5B | 120.0 |
| N4—C15—H15B | 109.3 | H5A—N5—H5B | 120.0 |
| C14—C15—H15B | 109.3 | C24—O1—C21 | 105.34 (17) |
| H15A—C15—H15B | 108.0 | C27—O3—H3B | 109.5 |
| N4—C16—C17 | 110.67 (19) | ||
| C7—C2—C3—C4 | 0.4 (4) | O1—C21—C22—C25 | 0.1 (3) |
| C1—C2—C3—C4 | −177.9 (3) | N4—C18—C23—C22 | −175.9 (2) |
| C2—C3—C4—C5 | 0.2 (4) | C19—C18—C23—C22 | 0.5 (3) |
| C3—C4—C5—N2 | −179.1 (3) | C21—C22—C23—C18 | −1.0 (3) |
| C3—C4—C5—C6 | −0.4 (4) | C25—C22—C23—C18 | 178.5 (2) |
| N2—C5—C6—C7 | 178.9 (2) | O1—C24—C25—C22 | −0.5 (3) |
| C4—C5—C6—C7 | −0.1 (4) | C26—C24—C25—C22 | 180.0 (2) |
| N2—C5—C6—C9 | 0.1 (3) | C21—C22—C25—C24 | 0.2 (3) |
| C4—C5—C6—C9 | −178.9 (2) | C23—C22—C25—C24 | −179.4 (2) |
| C3—C2—C7—C6 | −0.9 (4) | C25—C24—C26—O2 | −2.5 (4) |
| C1—C2—C7—C6 | 177.4 (2) | O1—C24—C26—O2 | 178.0 (2) |
| C5—C6—C7—C2 | 0.8 (3) | C25—C24—C26—N5 | 177.7 (2) |
| C9—C6—C7—C2 | 179.1 (2) | O1—C24—C26—N5 | −1.8 (3) |
| N2—C8—C9—C6 | −0.6 (3) | C4—C5—N2—C8 | 178.4 (3) |
| N2—C8—C9—C10 | −178.4 (2) | C6—C5—N2—C8 | −0.5 (3) |
| C7—C6—C9—C8 | −178.2 (3) | C9—C8—N2—C5 | 0.7 (3) |
| C5—C6—C9—C8 | 0.3 (3) | C15—C14—N3—C17 | −53.8 (2) |
| C7—C6—C9—C10 | −0.5 (4) | C15—C14—N3—C13 | −177.34 (19) |
| C5—C6—C9—C10 | 178.1 (2) | C16—C17—N3—C14 | 55.1 (2) |
| C8—C9—C10—C11 | 7.9 (4) | C16—C17—N3—C13 | 179.89 (19) |
| C6—C9—C10—C11 | −169.3 (2) | C12—C13—N3—C14 | −58.5 (3) |
| C9—C10—C11—C12 | 179.2 (2) | C12—C13—N3—C17 | 178.6 (2) |
| C10—C11—C12—C13 | 80.7 (3) | C23—C18—N4—C15 | −1.8 (3) |
| C11—C12—C13—N3 | −177.70 (19) | C19—C18—N4—C15 | −178.3 (2) |
| N3—C14—C15—N4 | 55.5 (3) | C23—C18—N4—C16 | −133.3 (2) |
| N4—C16—C17—N3 | −58.2 (3) | C19—C18—N4—C16 | 50.3 (3) |
| C23—C18—C19—C20 | 0.9 (4) | C14—C15—N4—C18 | 168.90 (18) |
| N4—C18—C19—C20 | 177.5 (2) | C14—C15—N4—C16 | −57.0 (2) |
| C18—C19—C20—C21 | −1.6 (4) | C17—C16—N4—C18 | −167.80 (19) |
| C19—C20—C21—O1 | −178.4 (2) | C17—C16—N4—C15 | 58.5 (2) |
| C19—C20—C21—C22 | 1.0 (4) | C25—C24—O1—C21 | 0.6 (3) |
| C20—C21—C22—C23 | 0.3 (4) | C26—C24—O1—C21 | −179.84 (19) |
| O1—C21—C22—C23 | 179.77 (19) | C20—C21—O1—C24 | 179.0 (2) |
| C20—C21—C22—C25 | −179.3 (2) | C22—C21—O1—C24 | −0.4 (2) |
Hydrogen-bond geometry (Å, º)
Cg5 is the centroid of the C18–C22 ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···O3i | 0.86 | 2.25 | 2.971 (3) | 141 |
| N3—H3A···Cl1 | 0.91 | 2.18 | 3.0787 (19) | 172 |
| N5—H5A···Cl1ii | 0.86 | 2.42 | 3.250 (2) | 162 |
| N5—H5B···N1iii | 0.86 | 2.33 | 3.151 (4) | 160 |
| O3—H3B···Cl1 | 0.82 | 2.38 | 3.195 (2) | 171 |
| C13—H13A···O2iv | 0.97 | 2.33 | 3.272 (3) | 164 |
| C19—H19···O3v | 0.93 | 2.55 | 3.348 (3) | 144 |
| C14—H14B···Cg5vi | 0.97 | 2.48 | 3.393 (2) | 156 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x, −y+2, −z+2; (iii) −x, −y+1, −z+1; (iv) x, y−1, z−1; (v) x−1, y, z; (vi) −x, −y+1, −z+2.
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989016017734/xu5894sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016017734/xu5894Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989016017734/xu5894Isup3.cml
CCDC reference: 1439516
Additional supporting information: crystallographic information; 3D view; checkCIF report



